RNA–Protein interactions for RNA: ENST00000553578.5

RDH11-204, Transcript of retinol dehydrogenase 11, humanhuman

TSL 1 (best)

Gene RDH11, Length 4,035 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RDH11-204ENST00000553578 TAF3Q5VWG9 929 aa4.98□□□□□ -1.61
RDH11-204ENST00000553578 SND1Q7KZF4 910 aaKnown RBP eCLIP4.98□□□□□ -1.616e-8■■■■■ 29.8
RDH11-204ENST00000553578 NLRP13Q86W25 1043 aa4.98□□□□□ -1.61
RDH11-204ENST00000553578 GLYCTKQ8IVS8 523 aa4.98□□□□□ -1.61
RDH11-204ENST00000553578 PRKD2Q9BZL6 878 aa4.98□□□□□ -1.61
RDH11-204ENST00000553578 IGBP1P78318 339 aa4.97□□□□□ -1.61
RDH11-204ENST00000553578 IDI1Q13907 227 aa4.97□□□□□ -1.61
RDH11-204ENST00000553578 KIAA1211Q6ZU35 1233 aa4.97□□□□□ -1.61
RDH11-204ENST00000553578 MKL1Q969V6 931 aa4.97□□□□□ -1.61
RDH11-204ENST00000553578 NUDT12Q9BQG2 462 aa4.97□□□□□ -1.61
RDH11-204ENST00000553578 GOPCQ9HD26 462 aa4.97□□□□□ -1.61
RDH11-204ENST00000553578 RGS20O76081 388 aa4.97□□□□□ -1.61
RDH11-204ENST00000553578 QPCTQ16769 361 aa4.97□□□□□ -1.61
RDH11-204ENST00000553578 UTP14CQ5TAP6 766 aaKnown RBP4.97□□□□□ -1.61
RDH11-204ENST00000553578 DHX38Q92620 1227 aaKnown RBP4.97□□□□□ -1.61
RDH11-204ENST00000553578 MED1Q15648 1581 aaPredicted RBP4.97□□□□□ -1.61
RDH11-204ENST00000553578 TNRQ92752 1358 aa4.97□□□□□ -1.61
RDH11-204ENST00000553578 MAPK1P28482 360 aa4.97□□□□□ -1.61
RDH11-204ENST00000553578 PDE6BP35913 854 aa4.97□□□□□ -1.61
RDH11-204ENST00000553578 FAM69CQ0P6D2 419 aa4.97□□□□□ -1.61
RDH11-204ENST00000553578 ZNF211Q13398 564 aaPredicted RBP4.97□□□□□ -1.61
RDH11-204ENST00000553578 KIF20AO95235 890 aa4.96□□□□□ -1.61
RDH11-204ENST00000553578 CD2BP2O95400 341 aaKnown RBP4.96□□□□□ -1.61
RDH11-204ENST00000553578 SLC19A1P41440 591 aa4.96□□□□□ -1.61
RDH11-204ENST00000553578 CCDC125Q86Z20 511 aa4.96□□□□□ -1.61
RDH11-204ENST00000553578 ABCF1Q8NE71 845 aaKnown RBP eCLIP4.96□□□□□ -1.61
RDH11-204ENST00000553578 FAM161BQ96MY7 647 aa4.96□□□□□ -1.61
RDH11-204ENST00000553578 MPHOSPH6Q99547 160 aaKnown RBP4.96□□□□□ -1.61
RDH11-204ENST00000553578 HINFPQ9BQA5 517 aa4.96□□□□□ -1.61
RDH11-204ENST00000553578 ALS2Q96Q42 1657 aa4.96□□□□□ -1.62
RDH11-204ENST00000553578 KIF24Q5T7B8 1368 aa4.96□□□□□ -1.62
RDH11-204ENST00000553578 USP31Q70CQ4 1352 aa4.96□□□□□ -1.62
RDH11-204ENST00000553578 LILRB3O75022 631 aa4.96□□□□□ -1.62
RDH11-204ENST00000553578 DXOO77932 396 aaKnown RBP4.96□□□□□ -1.62
RDH11-204ENST00000553578 TNNT3P45378 269 aaPredicted RBP4.96□□□□□ -1.62
RDH11-204ENST00000553578 BANK1Q8NDB2 785 aa4.96□□□□□ -1.62
RDH11-204ENST00000553578 PTPRUQ92729 1446 aa4.96□□□□□ -1.62
RDH11-204ENST00000553578 XIRP1Q702N8 1843 aaKnown RBP4.96□□□□□ -1.62
RDH11-204ENST00000553578 FAM208AQ9UK61 1670 aaKnown RBP4.96□□□□□ -1.62
RDH11-204ENST00000553578 CCNYL3P0C7X3 344 aa4.96□□□□□ -1.62
RDH11-204ENST00000553578 BRD3Q15059 726 aa4.96□□□□□ -1.62
RDH11-204ENST00000553578 TFIP11Q9UBB9 837 aaKnown RBP4.96□□□□□ -1.62
RDH11-204ENST00000553578 PEAK1Q9H792 1746 aa4.96□□□□□ -1.62
RDH11-204ENST00000553578 CFAP65Q6ZU64 1925 aaKnown RBP4.96□□□□□ -1.62
RDH11-204ENST00000553578 MMP16P51512 607 aa4.95□□□□□ -1.62
RDH11-204ENST00000553578 EDC4Q6P2E9 1401 aaKnown RBP4.95□□□□□ -1.62
RDH11-204ENST00000553578 CCSER2Q9H7U1 834 aa4.95□□□□□ -1.62
RDH11-204ENST00000553578 SLIT3O75094 1523 aa4.95□□□□□ -1.62
RDH11-204ENST00000553578 OVOS2A0A0J9YW53 1432 aa4.95□□□□□ -1.62
RDH11-204ENST00000553578 OVOS2Q6IE36 1432 aa4.95□□□□□ -1.62
RDH11-204ENST00000553578 CNGA1P29973 690 aa4.95□□□□□ -1.62
RDH11-204ENST00000553578 NKTRP30414 1462 aaKnown RBP4.95□□□□□ -1.62
RDH11-204ENST00000553578 LETM1O95202 739 aaPredicted RBP4.95□□□□□ -1.62
RDH11-204ENST00000553578 KCNJ4P48050 445 aa4.95□□□□□ -1.62
RDH11-204ENST00000553578 PTPRNQ16849 979 aa4.95□□□□□ -1.62
RDH11-204ENST00000553578 CT47A1Q5JQC4 288 aaPredicted RBP4.95□□□□□ -1.62
RDH11-204ENST00000553578 DESI1Q6ICB0 168 aa4.95□□□□□ -1.62
RDH11-204ENST00000553578 PNMA1Q8ND90 353 aa4.95□□□□□ -1.62
RDH11-204ENST00000553578 CARD14Q9BXL6 1004 aa4.95□□□□□ -1.62
RDH11-204ENST00000553578 R3HCC1Q9Y3T6 440 aaKnown RBP4.95□□□□□ -1.62
RDH11-204ENST00000553578 MAP2P11137 1827 aaKnown RBP4.95□□□□□ -1.62
RDH11-204ENST00000553578 H3BRB1 525 aa4.94□□□□□ -1.62
RDH11-204ENST00000553578 MTMR3Q13615 1198 aa4.94□□□□□ -1.62
RDH11-204ENST00000553578 ZNF771Q7L3S4 317 aaPredicted RBP4.94□□□□□ -1.62
RDH11-204ENST00000553578 TMEM87AQ8NBN3 555 aa4.94□□□□□ -1.62
RDH11-204ENST00000553578 TUT1Q9H6E5 874 aaKnown RBP4.94□□□□□ -1.62
RDH11-204ENST00000553578 GABBR1Q9UBS5 961 aa4.94□□□□□ -1.62
RDH11-204ENST00000553578 SIPA1L3O60292 1781 aaPredicted RBP4.94□□□□□ -1.62
RDH11-204ENST00000553578 CFAP99D6REC4 459 aa4.94□□□□□ -1.62
RDH11-204ENST00000553578 EP400NLQ6ZTU2 488 aa4.94□□□□□ -1.62
RDH11-204ENST00000553578 MTERF4Q7Z6M4 381 aaKnown RBP4.94□□□□□ -1.62
RDH11-204ENST00000553578 V9GY48 417 aaPredicted RBP4.94□□□□□ -1.62
RDH11-204ENST00000553578 IBTKQ9P2D0 1353 aaPredicted RBP4.94□□□□□ -1.62
RDH11-204ENST00000553578 DCCP43146 1447 aa4.94□□□□□ -1.62
RDH11-204ENST00000553578 ATP2B1P20020 1258 aa4.94□□□□□ -1.62
RDH11-204ENST00000553578 USP5P45974 858 aa4.94□□□□□ -1.62
RDH11-204ENST00000553578 SRPK2P78362 688 aaKnown RBP4.94□□□□□ -1.62
RDH11-204ENST00000553578 TMEM259Q4ZIN3 620 aa4.94□□□□□ -1.62
RDH11-204ENST00000553578 CCDC184Q52MB2 194 aa4.94□□□□□ -1.62
RDH11-204ENST00000553578 GOLIM4O00461 696 aa4.94□□□□□ -1.62
RDH11-204ENST00000553578 FRAT2O75474 233 aaPredicted RBP4.94□□□□□ -1.62
RDH11-204ENST00000553578 RFC5P40937 340 aa4.94□□□□□ -1.62
RDH11-204ENST00000553578 CHMP4BP1P59074 171 aa4.94□□□□□ -1.62
RDH11-204ENST00000553578 GNL2Q13823 731 aaKnown RBP4.94□□□□□ -1.62
RDH11-204ENST00000553578 EXOC8Q8IYI6 725 aa4.94□□□□□ -1.62
RDH11-204ENST00000553578 TTC16Q8NEE8 873 aa4.94□□□□□ -1.62
RDH11-204ENST00000553578 VTI1BQ9UEU0 232 aa4.94□□□□□ -1.62
RDH11-204ENST00000553578 DLG5Q8TDM6 1919 aa4.93□□□□□ -1.62
RDH11-204ENST00000553578 PARP4Q9UKK3 1724 aaKnown RBP4.93□□□□□ -1.62
RDH11-204ENST00000553578 STRCP1A6NGW2 1772 aa4.93□□□□□ -1.62
RDH11-204ENST00000553578 ANKRD33BA6NCL7 494 aa4.93□□□□□ -1.62
RDH11-204ENST00000553578 ESPNB1AK53 854 aa4.93□□□□□ -1.62
RDH11-204ENST00000553578 CYB5RLQ6IPT4 315 aa4.93□□□□□ -1.62
RDH11-204ENST00000553578 TCERG1O14776 1098 aaKnown RBP4.93□□□□□ -1.62
RDH11-204ENST00000553578 RAB11FIP3O75154 756 aa4.93□□□□□ -1.62
RDH11-204ENST00000553578 RPIAP49247 311 aa4.93□□□□□ -1.62
RDH11-204ENST00000553578 CFAP70Q5T0N1 1121 aa4.93□□□□□ -1.62
RDH11-204ENST00000553578 GNL3Q9BVP2 549 aaKnown RBP eCLIP4.93□□□□□ -1.62
RDH11-204ENST00000553578 GTPBP4Q9BZE4 634 aaKnown RBP4.93□□□□□ -1.62
RDH11-204ENST00000553578 RGPD8O14715 1765 aaPredicted RBP4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 89.3 ms