RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-205ENST00000548650 SUPT20HQ8NEM7 779 aa22.55■■□□□ 1.2
CHMP1A-205ENST00000548650 MKRN1Q9UHC7 482 aaKnown RBP22.55■■□□□ 1.2
CHMP1A-205ENST00000548650 CLEC11AQ9Y240 323 aa22.55■■□□□ 1.2
CHMP1A-205ENST00000548650 LMOD1P29536 600 aaPredicted RBP22.54■■□□□ 1.2
CHMP1A-205ENST00000548650 TRIM28Q13263 835 aaKnown RBP22.54■■□□□ 1.2
CHMP1A-205ENST00000548650 MAP1SQ66K74 1059 aaPredicted RBP22.54■■□□□ 1.2
CHMP1A-205ENST00000548650 MPNDQ8N594 471 aa22.54■■□□□ 1.2
CHMP1A-205ENST00000548650 PHAXQ9H814 394 aaKnown RBP22.54■■□□□ 1.2
CHMP1A-205ENST00000548650 ELL2O00472 640 aaPredicted RBP22.53■■□□□ 1.2
CHMP1A-205ENST00000548650 HSPA1AP0DMV8 641 aaKnown RBP22.53■■□□□ 1.2
CHMP1A-205ENST00000548650 HSPA1BP0DMV9 641 aaKnown RBP22.53■■□□□ 1.2
CHMP1A-205ENST00000548650 EPS15P42566 896 aa22.53■■□□□ 1.2
CHMP1A-205ENST00000548650 GOLGA2Q08379 1002 aa22.53■■□□□ 1.2
CHMP1A-205ENST00000548650 KIAA2012Q0VF49 1180 aa22.53■■□□□ 1.2
CHMP1A-205ENST00000548650 SF3B3Q15393 1217 aaKnown RBP22.53■■□□□ 1.2
CHMP1A-205ENST00000548650 C8orf58Q8NAV2 365 aa22.53■■□□□ 1.2
CHMP1A-205ENST00000548650 TRPM7Q96QT4 1865 aa22.52■■□□□ 1.2
CHMP1A-205ENST00000548650 TMC4Q7Z404 712 aa22.52■■□□□ 1.2
CHMP1A-205ENST00000548650 ZNRF3Q9ULT6 936 aa22.52■■□□□ 1.2
CHMP1A-205ENST00000548650 TMEM88BA6NKF7 163 aa22.51■■□□□ 1.19
CHMP1A-205ENST00000548650 RTL5Q5HYW3 569 aaPredicted RBP22.51■■□□□ 1.19
CHMP1A-205ENST00000548650 CNTROBQ8N137 903 aa22.51■■□□□ 1.19
CHMP1A-205ENST00000548650 CELF1Q92879 486 aaKnown RBP22.51■■□□□ 1.19
CHMP1A-205ENST00000548650 CXCL9Q07325 125 aa22.5■■□□□ 1.19
CHMP1A-205ENST00000548650 COL13A1Q5TAT6 717 aaPredicted RBP22.5■■□□□ 1.19
CHMP1A-205ENST00000548650 RIC3Q7Z5B4 369 aa22.5■■□□□ 1.19
CHMP1A-205ENST00000548650 IRS4O14654 1257 aaPredicted RBP22.49■■□□□ 1.19
CHMP1A-205ENST00000548650 GPRC5DQ9NZD1 345 aa22.49■■□□□ 1.19
CHMP1A-205ENST00000548650 THSD7BQ9C0I4 1608 aa22.49■■□□□ 1.19
CHMP1A-205ENST00000548650 MYH3P11055 1940 aa22.49■■□□□ 1.19
CHMP1A-205ENST00000548650 USP50Q70EL3 339 aaPredicted RBP22.48■■□□□ 1.19
CHMP1A-205ENST00000548650 TSPYL6Q8N831 410 aa22.48■■□□□ 1.19
CHMP1A-205ENST00000548650 ZBTB38Q8NAP3 1195 aaPredicted RBP22.48■■□□□ 1.19
CHMP1A-205ENST00000548650 TSR2Q969E8 191 aaKnown RBP22.48■■□□□ 1.19
CHMP1A-205ENST00000548650 MYD88Q99836 296 aa22.48■■□□□ 1.19
CHMP1A-205ENST00000548650 CDHR2Q9BYE9 1310 aa22.48■■□□□ 1.19
CHMP1A-205ENST00000548650 CCDC27Q2M243 656 aa22.47■■□□□ 1.19
CHMP1A-205ENST00000548650 CCDC30Q5VVM6 783 aa22.47■■□□□ 1.19
CHMP1A-205ENST00000548650 YDJCA8MPS7 323 aa22.46■■□□□ 1.19
CHMP1A-205ENST00000548650 GMPSP49915 693 aaPredicted RBP22.46■■□□□ 1.19
CHMP1A-205ENST00000548650 CIAPIN1Q6FI81 312 aa22.46■■□□□ 1.19
CHMP1A-205ENST00000548650 ADARB2Q9NS39 739 aaKnown RBP22.46■■□□□ 1.19
CHMP1A-205ENST00000548650 SCN9AQ15858 1988 aa22.45■■□□□ 1.18
CHMP1A-205ENST00000548650 CCDC191Q8NCU4 936 aa22.45■■□□□ 1.18
CHMP1A-205ENST00000548650 SPEF2Q9C093 1822 aa22.45■■□□□ 1.18
CHMP1A-205ENST00000548650 RASSF10A6NK89 507 aa22.44■■□□□ 1.18
CHMP1A-205ENST00000548650 RAD17O75943 681 aa22.44■■□□□ 1.18
CHMP1A-205ENST00000548650 PCCAP05165 728 aaPredicted RBP22.44■■□□□ 1.18
CHMP1A-205ENST00000548650 GPSM2P81274 684 aa22.44■■□□□ 1.18
CHMP1A-205ENST00000548650 WWC1Q8IX03 1113 aa22.44■■□□□ 1.18
CHMP1A-205ENST00000548650 METTL22Q9BUU2 404 aaPredicted RBP22.44■■□□□ 1.18
CHMP1A-205ENST00000548650 PSME4Q14997 1843 aa22.43■■□□□ 1.18
CHMP1A-205ENST00000548650 DDX58O95786 925 aaKnown RBP22.43■■□□□ 1.18
CHMP1A-205ENST00000548650 VEGFBP49765 207 aa22.43■■□□□ 1.18
CHMP1A-205ENST00000548650 CHMP4AQ9BY43 222 aa22.43■■□□□ 1.18
CHMP1A-205ENST00000548650 CWC25Q9NXE8 425 aaPredicted RBP22.43■■□□□ 1.18
CHMP1A-205ENST00000548650 NSFL1CQ9UNZ2 370 aaKnown RBP22.43■■□□□ 1.18
CHMP1A-205ENST00000548650 CACNA1FO60840 1977 aa22.42■■□□□ 1.18
CHMP1A-205ENST00000548650 ZEB1P37275 1124 aaPredicted RBP22.42■■□□□ 1.18
CHMP1A-205ENST00000548650 FMR1Q06787 632 aaKnown RBP eCLIP22.42■■□□□ 1.18
CHMP1A-205ENST00000548650 TNIP1Q15025 636 aa22.42■■□□□ 1.18
CHMP1A-205ENST00000548650 SEC31BQ9NQW1 1179 aa22.42■■□□□ 1.18
CHMP1A-205ENST00000548650 POLLQ9UGP5 575 aa22.42■■□□□ 1.18
CHMP1A-205ENST00000548650 IL16Q14005 1332 aa22.41■■□□□ 1.18
CHMP1A-205ENST00000548650 RPS8P62241 208 aaKnown RBP22.41■■□□□ 1.18
CHMP1A-205ENST00000548650 WASHC4Q2M389 1173 aa22.41■■□□□ 1.18
CHMP1A-205ENST00000548650 MRS2Q9HD23 443 aa22.41■■□□□ 1.18
CHMP1A-205ENST00000548650 MAP3K2Q9Y2U5 619 aa22.41■■□□□ 1.18
CHMP1A-205ENST00000548650 TRAF5O00463 557 aa22.4■■□□□ 1.18
CHMP1A-205ENST00000548650 HSP90B1P14625 803 aaKnown RBP22.4■■□□□ 1.18
CHMP1A-205ENST00000548650 DBNDD1Q9H9R9 158 aa22.4■■□□□ 1.18
CHMP1A-205ENST00000548650 SHTN1A0MZ66 631 aa22.39■■□□□ 1.17
CHMP1A-205ENST00000548650 PDE8AO60658 829 aa22.39■■□□□ 1.17
CHMP1A-205ENST00000548650 IGKV5-2P06315 115 aa22.39■■□□□ 1.17
CHMP1A-205ENST00000548650 TWISTNBQ3B726 338 aaPredicted RBP22.39■■□□□ 1.17
CHMP1A-205ENST00000548650 NCBP3Q53F19 620 aaKnown RBP22.39■■□□□ 1.17
CHMP1A-205ENST00000548650 KSR2Q6VAB6 950 aa22.39■■□□□ 1.17
CHMP1A-205ENST00000548650 TBC1D16Q8TBP0 767 aa22.39■■□□□ 1.17
CHMP1A-205ENST00000548650 TRPM4Q8TD43 1214 aa22.39■■□□□ 1.17
CHMP1A-205ENST00000548650 JARID2Q92833 1246 aaPredicted RBP22.39■■□□□ 1.17
CHMP1A-205ENST00000548650 GPR101Q96P66 508 aaPredicted RBP22.39■■□□□ 1.17
CHMP1A-205ENST00000548650 BCL2L13Q9BXK5 485 aa22.39■■□□□ 1.17
CHMP1A-205ENST00000548650 ABT1Q9ULW3 272 aaKnown RBP22.39■■□□□ 1.17
CHMP1A-205ENST00000548650 RTL9Q8NET4 1388 aa22.38■■□□□ 1.17
CHMP1A-205ENST00000548650 FANCIQ9NVI1 1328 aa22.38■■□□□ 1.17
CHMP1A-205ENST00000548650 PI4KAP2A4QPH2 592 aa22.38■■□□□ 1.17
CHMP1A-205ENST00000548650 C6orf229H3BNL8 230 aa22.38■■□□□ 1.17
CHMP1A-205ENST00000548650 CCDC152Q4G0S7 254 aa22.38■■□□□ 1.17
CHMP1A-205ENST00000548650 TNS4Q8IZW8 715 aa22.38■■□□□ 1.17
CHMP1A-205ENST00000548650 PI4KAP1Q8N8J0 262 aa22.38■■□□□ 1.17
CHMP1A-205ENST00000548650 STK31Q9BXU1 1019 aa22.38■■□□□ 1.17
CHMP1A-205ENST00000548650 PODXL2Q9NZ53 605 aa22.38■■□□□ 1.17
CHMP1A-205ENST00000548650 PSMD14O00487 310 aa22.37■■□□□ 1.17
CHMP1A-205ENST00000548650 RIMBP2O15034 1052 aa22.37■■□□□ 1.17
CHMP1A-205ENST00000548650 FOXN1O15353 648 aa22.37■■□□□ 1.17
CHMP1A-205ENST00000548650 ECE2O60344 883 aa22.37■■□□□ 1.17
CHMP1A-205ENST00000548650 HIRAP54198 1017 aaPredicted RBP22.37■■□□□ 1.17
CHMP1A-205ENST00000548650 DEFB115Q30KQ5 88 aa22.37■■□□□ 1.17
CHMP1A-205ENST00000548650 EYA3Q99504 573 aa22.37■■□□□ 1.17
CHMP1A-205ENST00000548650 CST9Q5W186 159 aa22.36■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 65.3 ms