RNA–Protein interactions for RNA: ENST00000533222.5

CD44-236, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 581 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-236ENST00000533222 CNTNAP3BQ96NU0 1288 aa7.32□□□□□ -1.24
CD44-236ENST00000533222 CNTNAP3Q9BZ76 1288 aa7.32□□□□□ -1.24
CD44-236ENST00000533222 PHF24Q9UPV7 400 aa7.32□□□□□ -1.24
CD44-236ENST00000533222 XYLBO75191 536 aa7.31□□□□□ -1.24
CD44-236ENST00000533222 MX2P20592 715 aa7.31□□□□□ -1.24
CD44-236ENST00000533222 MAPK1P28482 360 aa7.31□□□□□ -1.24
CD44-236ENST00000533222 SETQ01105 290 aaPredicted RBP7.31□□□□□ -1.24
CD44-236ENST00000533222 FTSJ3Q8IY81 847 aaKnown RBP7.31□□□□□ -1.24
CD44-236ENST00000533222 FAM43AQ8N2R8 423 aa7.31□□□□□ -1.24
CD44-236ENST00000533222 BRPF3Q9ULD4 1205 aa7.31□□□□□ -1.24
CD44-236ENST00000533222 A0A0U1RQG5 324 aaPredicted RBP7.3□□□□□ -1.24
CD44-236ENST00000533222 UBAP1LF5GYI3 381 aa7.3□□□□□ -1.24
CD44-236ENST00000533222 PPM1GO15355 546 aaPredicted RBP7.3□□□□□ -1.24
CD44-236ENST00000533222 SASH3O75995 380 aa7.3□□□□□ -1.24
CD44-236ENST00000533222 BMP4P12644 408 aa7.3□□□□□ -1.24
CD44-236ENST00000533222 EPB42P16452 691 aa7.3□□□□□ -1.24
CD44-236ENST00000533222 ANP32AP39687 249 aaKnown RBP7.3□□□□□ -1.24
CD44-236ENST00000533222 LAMC2Q13753 1193 aa7.3□□□□□ -1.24
CD44-236ENST00000533222 GJD3Q8N144 294 aa7.3□□□□□ -1.24
CD44-236ENST00000533222 PIK3R5Q8WYR1 880 aa7.3□□□□□ -1.24
CD44-236ENST00000533222 GSX2Q9BZM3 304 aa7.3□□□□□ -1.24
CD44-236ENST00000533222 MBIPQ9NS73 344 aa7.3□□□□□ -1.24
CD44-236ENST00000533222 ZFATQ9P243 1243 aa7.3□□□□□ -1.24
CD44-236ENST00000533222 DCTN4Q9UJW0 460 aa7.3□□□□□ -1.24
CD44-236ENST00000533222 CCDC9Q9Y3X0 531 aaKnown RBP7.3□□□□□ -1.24
CD44-236ENST00000533222 IGF1RP08069 1367 aa7.3□□□□□ -1.24
CD44-236ENST00000533222 GPR182O15218 404 aa7.29□□□□□ -1.24
CD44-236ENST00000533222 NDUFB5O43674 189 aa7.29□□□□□ -1.24
CD44-236ENST00000533222 IGHA2P01877 340 aa7.29□□□□□ -1.24
CD44-236ENST00000533222 NFKB1P19838 968 aa7.29□□□□□ -1.24
CD44-236ENST00000533222 TARSP26639 723 aaKnown RBP7.29□□□□□ -1.24
CD44-236ENST00000533222 MARSP56192 900 aaKnown RBP7.29□□□□□ -1.24
CD44-236ENST00000533222 PCBP4P57723 403 aaKnown RBP7.29□□□□□ -1.24
CD44-236ENST00000533222 CNGB1Q14028 1251 aaPredicted RBP7.29□□□□□ -1.24
CD44-236ENST00000533222 C8orf34Q49A92 452 aa7.29□□□□□ -1.24
CD44-236ENST00000533222 FAM182BQ5T319 152 aa7.29□□□□□ -1.24
CD44-236ENST00000533222 TREML4Q6UXN2 200 aa7.29□□□□□ -1.24
CD44-236ENST00000533222 BHMTQ93088 406 aa7.29□□□□□ -1.24
CD44-236ENST00000533222 TMEM63CQ9P1W3 806 aa7.29□□□□□ -1.24
CD44-236ENST00000533222 KLF15Q9UIH9 416 aa7.29□□□□□ -1.24
CD44-236ENST00000533222 WASHC2AQ641Q2 1341 aa7.28□□□□□ -1.24
CD44-236ENST00000533222 PTMAP06454 111 aaKnown RBP7.28□□□□□ -1.24
CD44-236ENST00000533222 MCCP23508 829 aa7.28□□□□□ -1.24
CD44-236ENST00000533222 CCINQ13939 588 aa7.28□□□□□ -1.24
CD44-236ENST00000533222 TMCO4Q5TGY1 634 aa7.28□□□□□ -1.24
CD44-236ENST00000533222 TMC7Q7Z402 723 aa7.28□□□□□ -1.24
CD44-236ENST00000533222 FAM129BQ96TA1 746 aa7.28□□□□□ -1.24
CD44-236ENST00000533222 ADAMTS2O95450 1211 aa7.27□□□□□ -1.25
CD44-236ENST00000533222 EGFRP00533 1210 aa7.27□□□□□ -1.25
CD44-236ENST00000533222 CCDC27Q2M243 656 aa7.27□□□□□ -1.25
CD44-236ENST00000533222 SYT9Q86SS6 491 aa7.27□□□□□ -1.25
CD44-236ENST00000533222 FAM13BQ9NYF5 915 aa7.27□□□□□ -1.25
CD44-236ENST00000533222 FOXD3Q9UJU5 478 aaPredicted RBP7.27□□□□□ -1.25
CD44-236ENST00000533222 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP7.27□□□□□ -1.25
CD44-236ENST00000533222 RARAP10276 462 aa7.26□□□□□ -1.25
CD44-236ENST00000533222 ZNF468Q5VIY5 522 aaPredicted RBP7.26□□□□□ -1.25
CD44-236ENST00000533222 DNAJC14Q6Y2X3 702 aaPredicted RBP7.26□□□□□ -1.25
CD44-236ENST00000533222 ZNF438Q7Z4V0 828 aa7.26□□□□□ -1.25
CD44-236ENST00000533222 RBCK1Q9BYM8 510 aa7.26□□□□□ -1.25
CD44-236ENST00000533222 PRR12Q9ULL5 1215 aa7.26□□□□□ -1.25
CD44-236ENST00000533222 GTF3C5Q9Y5Q8 519 aaPredicted RBP7.26□□□□□ -1.25
CD44-236ENST00000533222 CLGNO14967 610 aa7.25□□□□□ -1.25
CD44-236ENST00000533222 MMP20O60882 483 aa7.25□□□□□ -1.25
CD44-236ENST00000533222 CYP2E1P05181 493 aaPredicted RBP7.25□□□□□ -1.25
CD44-236ENST00000533222 PTMSP20962 102 aa7.25□□□□□ -1.25
CD44-236ENST00000533222 CANXP27824 592 aaKnown RBP7.25□□□□□ -1.25
CD44-236ENST00000533222 MFAP1P55081 439 aaKnown RBP7.25□□□□□ -1.25
CD44-236ENST00000533222 HSP90AA2PQ14568 343 aaPredicted RBP7.25□□□□□ -1.25
CD44-236ENST00000533222 C1orf229Q6ZS94 237 aaPredicted RBP7.25□□□□□ -1.25
CD44-236ENST00000533222 FCHSD1Q86WN1 690 aa7.25□□□□□ -1.25
CD44-236ENST00000533222 TMC1Q8TDI8 760 aa7.25□□□□□ -1.25
CD44-236ENST00000533222 WHAMMQ8TF30 809 aa7.25□□□□□ -1.25
CD44-236ENST00000533222 ACDQ96AP0 544 aa7.25□□□□□ -1.25
CD44-236ENST00000533222 PNMA5Q96PV4 448 aa7.25□□□□□ -1.25
CD44-236ENST00000533222 ELP3Q9H9T3 547 aa7.25□□□□□ -1.25
CD44-236ENST00000533222 CNTN3Q9P232 1028 aa7.25□□□□□ -1.25
CD44-236ENST00000533222 NEURL1BA8MQ27 555 aa7.24□□□□□ -1.25
CD44-236ENST00000533222 PCSK2P16519 638 aa7.24□□□□□ -1.25
CD44-236ENST00000533222 MMP14P50281 582 aa7.24□□□□□ -1.25
CD44-236ENST00000533222 SRSF11Q05519 484 aaKnown RBP7.24□□□□□ -1.25
CD44-236ENST00000533222 TBC1D8BQ0IIM8 1120 aa7.24□□□□□ -1.25
CD44-236ENST00000533222 ORC1Q13415 861 aa7.24□□□□□ -1.25
CD44-236ENST00000533222 AXDND1Q5T1B0 1012 aaPredicted RBP7.24□□□□□ -1.25
CD44-236ENST00000533222 NLRP13Q86W25 1043 aa7.24□□□□□ -1.25
CD44-236ENST00000533222 CHRDQ9H2X0 955 aa7.24□□□□□ -1.25
CD44-236ENST00000533222 IGFLR1Q9H665 355 aa7.24□□□□□ -1.25
CD44-236ENST00000533222 GGA1Q9UJY5 639 aa7.24□□□□□ -1.25
CD44-236ENST00000533222 TNFRSF21O75509 655 aa7.23□□□□□ -1.25
CD44-236ENST00000533222 ARAFP10398 606 aa7.23□□□□□ -1.25
CD44-236ENST00000533222 USP5P45974 858 aa7.23□□□□□ -1.25
CD44-236ENST00000533222 MAP2K3P46734 347 aa7.23□□□□□ -1.25
CD44-236ENST00000533222 MLLT1Q03111 559 aaPredicted RBP7.23□□□□□ -1.25
CD44-236ENST00000533222 COL13A1Q5TAT6 717 aaPredicted RBP7.23□□□□□ -1.25
CD44-236ENST00000533222 USPL1Q5W0Q7 1092 aa7.23□□□□□ -1.25
CD44-236ENST00000533222 C1orf127Q8N9H9 656 aa7.23□□□□□ -1.25
CD44-236ENST00000533222 ASB16Q96NS5 453 aa7.23□□□□□ -1.25
CD44-236ENST00000533222 OXCT2Q9BYC2 517 aaPredicted RBP7.23□□□□□ -1.25
CD44-236ENST00000533222 NIF3L1Q9GZT8 377 aa7.23□□□□□ -1.25
CD44-236ENST00000533222 KANSL3Q9P2N6 904 aa7.23□□□□□ -1.25
CD44-236ENST00000533222 PRDM4Q9UKN5 801 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms