RNA–Protein interactions for RNA: ENST00000517578.1

HMGB1P19-201, Transcript of high mobility group box 1 pseudogene 19, humanhuman

BASIC

Gene HMGB1P19, Length 577 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P19-201ENST00000517578 ATP1A2P50993 1020 aa6.07□□□□□ -1.44
HMGB1P19-201ENST00000517578 HIRAP54198 1017 aaPredicted RBP6.07□□□□□ -1.44
HMGB1P19-201ENST00000517578 PSMA6P60900 246 aaKnown RBP6.07□□□□□ -1.44
HMGB1P19-201ENST00000517578 C8orf86Q6ZUL3 223 aa6.07□□□□□ -1.44
HMGB1P19-201ENST00000517578 RAB44Q7Z6P3 723 aaPredicted RBP6.07□□□□□ -1.44
HMGB1P19-201ENST00000517578 OGFOD1Q8N543 542 aa6.07□□□□□ -1.44
HMGB1P19-201ENST00000517578 ZNF417Q8TAU3 575 aa6.07□□□□□ -1.44
HMGB1P19-201ENST00000517578 HSH2DQ96JZ2 352 aa6.07□□□□□ -1.44
HMGB1P19-201ENST00000517578 ZNF587Q96SQ5 575 aaPredicted RBP6.07□□□□□ -1.44
HMGB1P19-201ENST00000517578 DKK1O94907 266 aa6.06□□□□□ -1.44
HMGB1P19-201ENST00000517578 FAM193AP78312 1265 aa6.06□□□□□ -1.44
HMGB1P19-201ENST00000517578 SPEM2Q0P670 501 aa6.06□□□□□ -1.44
HMGB1P19-201ENST00000517578 CDCA8Q53HL2 280 aa6.06□□□□□ -1.44
HMGB1P19-201ENST00000517578 C1orf53Q5VUE5 145 aa6.06□□□□□ -1.44
HMGB1P19-201ENST00000517578 MICALL1Q8N3F8 863 aa6.06□□□□□ -1.44
HMGB1P19-201ENST00000517578 ZNF280CQ8ND82 737 aa6.06□□□□□ -1.44
HMGB1P19-201ENST00000517578 ZNF594Q96JF6 807 aaPredicted RBP6.06□□□□□ -1.44
HMGB1P19-201ENST00000517578 PHACTR1Q9C0D0 580 aa6.06□□□□□ -1.44
HMGB1P19-201ENST00000517578 SEMA6BQ9H3T3 888 aa6.06□□□□□ -1.44
HMGB1P19-201ENST00000517578 MYH16Q9H6N6 1097 aa6.06□□□□□ -1.44
HMGB1P19-201ENST00000517578 BRD7Q9NPI1 651 aa6.06□□□□□ -1.44
HMGB1P19-201ENST00000517578 PRDM6Q9NQX0 595 aa6.06□□□□□ -1.44
HMGB1P19-201ENST00000517578 CCDC66A2RUB6 948 aa6.05□□□□□ -1.44
HMGB1P19-201ENST00000517578 FAM229AH3BQW9 127 aa6.05□□□□□ -1.44
HMGB1P19-201ENST00000517578 M0R2N6 131 aa6.05□□□□□ -1.44
HMGB1P19-201ENST00000517578 NID1P14543 1247 aa6.05□□□□□ -1.44
HMGB1P19-201ENST00000517578 KCNQ4P56696 695 aa6.05□□□□□ -1.44
HMGB1P19-201ENST00000517578 HNRNPUQ00839 825 aaKnown RBP eCLIP6.05□□□□□ -1.44
HMGB1P19-201ENST00000517578 TYRO3Q06418 890 aa6.05□□□□□ -1.44
HMGB1P19-201ENST00000517578 B4GALNT3Q6L9W6 998 aa6.05□□□□□ -1.44
HMGB1P19-201ENST00000517578 LARP1Q6PKG0 1096 aaKnown RBP6.05□□□□□ -1.44
HMGB1P19-201ENST00000517578 PLCD4Q9BRC7 762 aa6.05□□□□□ -1.44
HMGB1P19-201ENST00000517578 BACH2Q9BYV9 841 aa6.05□□□□□ -1.44
HMGB1P19-201ENST00000517578 VRTNQ9H8Y1 702 aa6.05□□□□□ -1.44
HMGB1P19-201ENST00000517578 NEUROD4Q9HD90 331 aa6.05□□□□□ -1.44
HMGB1P19-201ENST00000517578 HDAC5Q9UQL6 1122 aa6.05□□□□□ -1.44
HMGB1P19-201ENST00000517578 HCN4Q9Y3Q4 1203 aa6.05□□□□□ -1.44
HMGB1P19-201ENST00000517578 GTF3C5Q9Y5Q8 519 aaPredicted RBP6.05□□□□□ -1.44
HMGB1P19-201ENST00000517578 NCAPD3P42695 1498 aa6.04□□□□□ -1.44
HMGB1P19-201ENST00000517578 C21orf2O43822 256 aa6.04□□□□□ -1.44
HMGB1P19-201ENST00000517578 ADH7P40394 386 aa6.04□□□□□ -1.44
HMGB1P19-201ENST00000517578 RSPO4Q2I0M5 234 aaPredicted RBP6.04□□□□□ -1.44
HMGB1P19-201ENST00000517578 NKAPLQ5M9Q1 402 aa6.04□□□□□ -1.44
HMGB1P19-201ENST00000517578 CC2D1BQ5T0F9 858 aaKnown RBP6.04□□□□□ -1.44
HMGB1P19-201ENST00000517578 SIX5Q8N196 739 aa6.04□□□□□ -1.44
HMGB1P19-201ENST00000517578 DCAF11Q8TEB1 546 aa6.04□□□□□ -1.44
HMGB1P19-201ENST00000517578 CCDC94Q9BW85 323 aaPredicted RBP6.04□□□□□ -1.44
HMGB1P19-201ENST00000517578 GEMIN8Q9NWZ8 242 aaKnown RBP6.04□□□□□ -1.44
HMGB1P19-201ENST00000517578 SPDYE3A6NKU9 549 aa6.03□□□□□ -1.44
HMGB1P19-201ENST00000517578 SFI1A8K8P3 1242 aa6.03□□□□□ -1.44
HMGB1P19-201ENST00000517578 OFD1O75665 1012 aa6.03□□□□□ -1.44
HMGB1P19-201ENST00000517578 PPP1R15AO75807 674 aaPredicted RBP6.03□□□□□ -1.44
HMGB1P19-201ENST00000517578 RALBP1Q15311 655 aa6.03□□□□□ -1.44
HMGB1P19-201ENST00000517578 PRRT3Q5FWE3 981 aa6.03□□□□□ -1.44
HMGB1P19-201ENST00000517578 CFAP70Q5T0N1 1121 aa6.03□□□□□ -1.44
HMGB1P19-201ENST00000517578 C20orf204Q6ZNR8 217 aa6.03□□□□□ -1.44
HMGB1P19-201ENST00000517578 LARGE2Q8N3Y3 721 aa6.03□□□□□ -1.44
HMGB1P19-201ENST00000517578 TSEN2Q8NCE0 465 aaKnown RBP6.03□□□□□ -1.44
HMGB1P19-201ENST00000517578 SUSD3Q96L08 255 aa6.03□□□□□ -1.44
HMGB1P19-201ENST00000517578 CEP63Q96MT8 703 aa6.03□□□□□ -1.44
HMGB1P19-201ENST00000517578 KRTAP4-8Q9BYQ9 185 aa6.03□□□□□ -1.44
HMGB1P19-201ENST00000517578 TPSG1Q9NRR2 321 aa6.03□□□□□ -1.44
HMGB1P19-201ENST00000517578 BECN1Q14457 450 aa6.02□□□□□ -1.45
HMGB1P19-201ENST00000517578 HS1BP3Q53T59 392 aa6.02□□□□□ -1.45
HMGB1P19-201ENST00000517578 KANK4Q5T7N3 995 aaPredicted RBP6.02□□□□□ -1.45
HMGB1P19-201ENST00000517578 CTR9Q6PD62 1173 aa6.02□□□□□ -1.45
HMGB1P19-201ENST00000517578 KIAA1211Q6ZU35 1233 aa6.02□□□□□ -1.45
HMGB1P19-201ENST00000517578 CCDC97Q96F63 343 aaPredicted RBP6.02□□□□□ -1.45
HMGB1P19-201ENST00000517578 ZNF830Q96NB3 372 aaPredicted RBP6.02□□□□□ -1.45
HMGB1P19-201ENST00000517578 ANKIB1Q9P2G1 1089 aa6.02□□□□□ -1.45
HMGB1P19-201ENST00000517578 KCNH4Q9UQ05 1017 aa6.02□□□□□ -1.45
HMGB1P19-201ENST00000517578 ZBED9Q6R2W3 1325 aa6.01□□□□□ -1.45
HMGB1P19-201ENST00000517578 LGR5O75473 907 aa6.01□□□□□ -1.45
HMGB1P19-201ENST00000517578 APBA3O96018 575 aa6.01□□□□□ -1.45
HMGB1P19-201ENST00000517578 CALRP27797 417 aaKnown RBP6.01□□□□□ -1.45
HMGB1P19-201ENST00000517578 DDX10Q13206 875 aaKnown RBP6.01□□□□□ -1.45
HMGB1P19-201ENST00000517578 GRIK4Q16099 956 aa6.01□□□□□ -1.45
HMGB1P19-201ENST00000517578 FOXD4L6Q3SYB3 417 aaPredicted RBP6.01□□□□□ -1.45
HMGB1P19-201ENST00000517578 CRTC2Q53ET0 693 aaPredicted RBP6.01□□□□□ -1.45
HMGB1P19-201ENST00000517578 FOXD4L3Q6VB84 417 aaPredicted RBP6.01□□□□□ -1.45
HMGB1P19-201ENST00000517578 ALDH16A1Q8IZ83 802 aa6.01□□□□□ -1.45
HMGB1P19-201ENST00000517578 CNPY4Q8N129 248 aa6.01□□□□□ -1.45
HMGB1P19-201ENST00000517578 C2orf49Q9BVC5 232 aaPredicted RBP6.01□□□□□ -1.45
HMGB1P19-201ENST00000517578 EFCC1Q9HA90 598 aa6.01□□□□□ -1.45
HMGB1P19-201ENST00000517578 CHMP3Q9Y3E7 222 aa6.01□□□□□ -1.45
HMGB1P19-201ENST00000517578 PHLDB1Q86UU1 1377 aa6.01□□□□□ -1.45
HMGB1P19-201ENST00000517578 ZCCHC6Q5VYS8 1495 aaKnown RBP6.01□□□□□ -1.45
HMGB1P19-201ENST00000517578 USP17L15C9J2P7 530 aa6□□□□□ -1.45
HMGB1P19-201ENST00000517578 PATL2C9JE40 543 aaKnown RBP6□□□□□ -1.45
HMGB1P19-201ENST00000517578 USP17L10C9JJH3 530 aa6□□□□□ -1.45
HMGB1P19-201ENST00000517578 USP17L13C9JLJ4 530 aa6□□□□□ -1.45
HMGB1P19-201ENST00000517578 USP17L12C9JPN9 530 aa6□□□□□ -1.45
HMGB1P19-201ENST00000517578 USP17L11C9JVI0 530 aa6□□□□□ -1.45
HMGB1P19-201ENST00000517578 USP17L21D6R901 530 aa6□□□□□ -1.45
HMGB1P19-201ENST00000517578 USP17L18D6R9N7 530 aa6□□□□□ -1.45
HMGB1P19-201ENST00000517578 USP17L22D6RA61 530 aa6□□□□□ -1.45
HMGB1P19-201ENST00000517578 USP17L17D6RBQ6 530 aa6□□□□□ -1.45
HMGB1P19-201ENST00000517578 USP17L19D6RCP7 530 aa6□□□□□ -1.45
HMGB1P19-201ENST00000517578 USP17L20D6RJB6 530 aa6□□□□□ -1.45
HMGB1P19-201ENST00000517578 PPP1R12BO60237 982 aaPredicted RBP6□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms