RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 MPNDQ8N594 471 aa26.88■■□□□ 1.89
SQSTM1-215ENST00000514093 ZIC5Q96T25 663 aa26.88■■□□□ 1.89
SQSTM1-215ENST00000514093 DLG5Q8TDM6 1919 aa26.88■■□□□ 1.89
SQSTM1-215ENST00000514093 DGKZQ13574 1117 aa26.87■■□□□ 1.89
SQSTM1-215ENST00000514093 HHIPL1Q96JK4 782 aa26.87■■□□□ 1.89
SQSTM1-215ENST00000514093 ANXA1P04083 346 aa26.86■■□□□ 1.89
SQSTM1-215ENST00000514093 EIF2S2P20042 333 aaKnown RBP26.86■■□□□ 1.89
SQSTM1-215ENST00000514093 CDC37L1Q7L3B6 337 aa26.86■■□□□ 1.89
SQSTM1-215ENST00000514093 SP8Q8IXZ3 490 aa26.86■■□□□ 1.89
SQSTM1-215ENST00000514093 BBOX1O75936 387 aa26.85■■□□□ 1.89
SQSTM1-215ENST00000514093 HCLS1P14317 486 aaPredicted RBP26.85■■□□□ 1.89
SQSTM1-215ENST00000514093 KIAA2012Q0VF49 1180 aa26.85■■□□□ 1.89
SQSTM1-215ENST00000514093 LRP10Q7Z4F1 713 aa26.85■■□□□ 1.89
SQSTM1-215ENST00000514093 USP48Q86UV5 1035 aa26.85■■□□□ 1.89
SQSTM1-215ENST00000514093 ZC3H15Q8WU90 426 aaKnown RBP26.85■■□□□ 1.89
SQSTM1-215ENST00000514093 CNOT7Q9UIV1 285 aaKnown RBP26.85■■□□□ 1.89
SQSTM1-215ENST00000514093 TNIP1Q15025 636 aa26.84■■□□□ 1.89
SQSTM1-215ENST00000514093 PDIA6Q15084 440 aa26.84■■□□□ 1.89
SQSTM1-215ENST00000514093 PROSER3Q2NL68 480 aa26.84■■□□□ 1.89
SQSTM1-215ENST00000514093 PLEKHF1Q96S99 279 aa26.84■■□□□ 1.89
SQSTM1-215ENST00000514093 NFE2L2Q16236 605 aa26.83■■□□□ 1.89
SQSTM1-215ENST00000514093 ERBB4Q15303 1308 aa26.83■■□□□ 1.89
SQSTM1-215ENST00000514093 YDJCA8MPS7 323 aa26.82■■□□□ 1.88
SQSTM1-215ENST00000514093 ZNF428Q96B54 188 aa26.82■■□□□ 1.88
SQSTM1-215ENST00000514093 ZBTB12Q9Y330 459 aaPredicted RBP26.82■■□□□ 1.88
SQSTM1-215ENST00000514093 CDHR2Q9BYE9 1310 aa26.82■■□□□ 1.88
SQSTM1-215ENST00000514093 HUNKP57058 714 aa26.81■■□□□ 1.88
SQSTM1-215ENST00000514093 NOGQ13253 232 aa26.8■■□□□ 1.88
SQSTM1-215ENST00000514093 DDX46Q7L014 1031 aaKnown RBP26.8■■□□□ 1.88
SQSTM1-215ENST00000514093 MICALL2Q8IY33 904 aa26.8■■□□□ 1.88
SQSTM1-215ENST00000514093 TSPYL4Q9UJ04 414 aa26.8■■□□□ 1.88
SQSTM1-215ENST00000514093 H7C1D1 291 aa26.79■■□□□ 1.88
SQSTM1-215ENST00000514093 AIMP1Q12904 312 aaKnown RBP26.79■■□□□ 1.88
SQSTM1-215ENST00000514093 SAMD7Q7Z3H4 446 aa26.79■■□□□ 1.88
SQSTM1-215ENST00000514093 NLRP10Q86W26 655 aa26.79■■□□□ 1.88
SQSTM1-215ENST00000514093 NECTIN2Q92692 538 aa26.79■■□□□ 1.88
SQSTM1-215ENST00000514093 GRAPQ13588 217 aa26.78■■□□□ 1.88
SQSTM1-215ENST00000514093 GRAPLQ8TC17 118 aaPredicted RBP26.78■■□□□ 1.88
SQSTM1-215ENST00000514093 LAMB2P55268 1798 aa26.78■■□□□ 1.88
SQSTM1-215ENST00000514093 COPS6Q7L5N1 327 aa26.77■■□□□ 1.88
SQSTM1-215ENST00000514093 TRMT112Q9UI30 125 aaKnown RBP26.77■■□□□ 1.88
SQSTM1-215ENST00000514093 TAF1P21675 1872 aa26.76■■□□□ 1.88
SQSTM1-215ENST00000514093 TBC1D10BQ4KMP7 808 aaPredicted RBP26.76■■□□□ 1.87
SQSTM1-215ENST00000514093 PSMD14O00487 310 aa26.75■■□□□ 1.87
SQSTM1-215ENST00000514093 EGFRP00533 1210 aa26.75■■□□□ 1.87
SQSTM1-215ENST00000514093 RBM26Q5T8P6 1007 aaKnown RBP26.75■■□□□ 1.87
SQSTM1-215ENST00000514093 XAGE3Q8WTP9 111 aa26.75■■□□□ 1.87
SQSTM1-215ENST00000514093 DBNDD1Q9H9R9 158 aa26.75■■□□□ 1.87
SQSTM1-215ENST00000514093 HSP90AB3PQ58FF7 597 aa26.74■■□□□ 1.87
SQSTM1-215ENST00000514093 RGMBQ6NW40 437 aa26.74■■□□□ 1.87
SQSTM1-215ENST00000514093 TNRC18O15417 2968 aaPredicted RBP26.73■■□□□ 1.87
SQSTM1-215ENST00000514093 SH3TC1Q8TE82 1336 aa26.73■■□□□ 1.87
SQSTM1-215ENST00000514093 MAPK8IP3Q9UPT6 1336 aa26.73■■□□□ 1.87
SQSTM1-215ENST00000514093 DUOX1Q9NRD9 1551 aa26.73■■□□□ 1.87
SQSTM1-215ENST00000514093 FAM155AB1AL88 458 aaPredicted RBP26.73■■□□□ 1.87
SQSTM1-215ENST00000514093 RIMBP2O15034 1052 aa26.73■■□□□ 1.87
SQSTM1-215ENST00000514093 KRT26Q7Z3Y9 468 aa26.73■■□□□ 1.87
SQSTM1-215ENST00000514093 ANKRD36CQ5JPF3 1778 aa26.73■■□□□ 1.87
SQSTM1-215ENST00000514093 ADM5C9JUS6 153 aa26.72■■□□□ 1.87
SQSTM1-215ENST00000514093 KIF23Q02241 960 aaPredicted RBP26.72■■□□□ 1.87
SQSTM1-215ENST00000514093 TCIRG1Q13488 830 aa26.72■■□□□ 1.87
SQSTM1-215ENST00000514093 WASHC4Q2M389 1173 aa26.72■■□□□ 1.87
SQSTM1-215ENST00000514093 DPF2Q92785 391 aa26.72■■□□□ 1.87
SQSTM1-215ENST00000514093 GBA2Q9HCG7 927 aaPredicted RBP26.72■■□□□ 1.87
SQSTM1-215ENST00000514093 KCNQ5Q9NR82 932 aa26.72■■□□□ 1.87
SQSTM1-215ENST00000514093 NSFL1CQ9UNZ2 370 aaKnown RBP26.72■■□□□ 1.87
SQSTM1-215ENST00000514093 SOX10P56693 466 aa26.71■■□□□ 1.87
SQSTM1-215ENST00000514093 C2orf69Q8N8R5 385 aa26.71■■□□□ 1.87
SQSTM1-215ENST00000514093 TRPA1O75762 1119 aa26.69■■□□□ 1.86
SQSTM1-215ENST00000514093 ZNF157P51786 506 aaPredicted RBP26.69■■□□□ 1.86
SQSTM1-215ENST00000514093 DOK7Q18PE1 504 aa26.69■■□□□ 1.86
SQSTM1-215ENST00000514093 CELF1Q92879 486 aaKnown RBP26.69■■□□□ 1.86
SQSTM1-215ENST00000514093 PCDH10Q9P2E7 1040 aa26.69■■□□□ 1.86
SQSTM1-215ENST00000514093 C6orf229H3BNL8 230 aa26.68■■□□□ 1.86
SQSTM1-215ENST00000514093 RIPK4P57078 832 aa26.68■■□□□ 1.86
SQSTM1-215ENST00000514093 DCPSQ96C86 337 aaKnown RBP26.68■■□□□ 1.86
SQSTM1-215ENST00000514093 RNF186Q9NXI6 227 aa26.68■■□□□ 1.86
SQSTM1-215ENST00000514093 POLR2AP24928 1970 aaKnown RBP26.67■■□□□ 1.86
SQSTM1-215ENST00000514093 TMC4Q7Z404 712 aa26.67■■□□□ 1.86
SQSTM1-215ENST00000514093 CCDC102AQ96A19 550 aa26.67■■□□□ 1.86
SQSTM1-215ENST00000514093 PNNQ9H307 717 aaKnown RBP26.67■■□□□ 1.86
SQSTM1-215ENST00000514093 POLLQ9UGP5 575 aa26.67■■□□□ 1.86
SQSTM1-215ENST00000514093 GPSM2P81274 684 aa26.66■■□□□ 1.86
SQSTM1-215ENST00000514093 FAM89AQ96GI7 184 aa26.66■■□□□ 1.86
SQSTM1-215ENST00000514093 SAGE1Q9NXZ1 904 aa26.66■■□□□ 1.86
SQSTM1-215ENST00000514093 ECE2O60344 883 aa26.65■■□□□ 1.86
SQSTM1-215ENST00000514093 KRT24Q2M2I5 525 aa26.65■■□□□ 1.86
SQSTM1-215ENST00000514093 RTL9Q8NET4 1388 aa26.64■■□□□ 1.86
SQSTM1-215ENST00000514093 RTL5Q5HYW3 569 aaPredicted RBP26.64■■□□□ 1.86
SQSTM1-215ENST00000514093 LRRC37AA6NMS7 1700 aa26.64■■□□□ 1.85
SQSTM1-215ENST00000514093 ASTN2O75129 1339 aaPredicted RBP26.64■■□□□ 1.85
SQSTM1-215ENST00000514093 RPS12P25398 132 aaKnown RBP26.63■■□□□ 1.85
SQSTM1-215ENST00000514093 CSRNP1Q96S65 589 aa26.63■■□□□ 1.85
SQSTM1-215ENST00000514093 COL4A1P02462 1669 aa26.63■■□□□ 1.85
SQSTM1-215ENST00000514093 KIF4BQ2VIQ3 1234 aa26.62■■□□□ 1.85
SQSTM1-215ENST00000514093 ATP5J2-PTCD1G3V325 749 aa26.61■■□□□ 1.85
SQSTM1-215ENST00000514093 SF3B3Q15393 1217 aaKnown RBP26.61■■□□□ 1.85
SQSTM1-215ENST00000514093 BABAM1Q9NWV8 329 aa26.61■■□□□ 1.85
SQSTM1-215ENST00000514093 GGA3Q9NZ52 723 aa26.61■■□□□ 1.85
SQSTM1-215ENST00000514093 CHPF2Q9P2E5 772 aa26.61■■□□□ 1.85
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms