RNA–Protein interactions for RNA: ENST00000509552.5

CCHCR1-228, Transcript of coiled-coil alpha-helical rod protein 1, humanhuman

TSL 1 (best)

Gene CCHCR1, Length 2,304 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCHCR1-228ENST00000509552 KRT32Q14532 448 aa21.38■■□□□ 1.01
CCHCR1-228ENST00000509552 TSGA10IPQ3SY00 556 aa21.38■■□□□ 1.01
CCHCR1-228ENST00000509552 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.38■■□□□ 1.01
CCHCR1-228ENST00000509552 ZNF589Q86UQ0 364 aaPredicted RBP21.38■■□□□ 1.01
CCHCR1-228ENST00000509552 CADPS2Q86UW7 1296 aa21.38■■□□□ 1.01
CCHCR1-228ENST00000509552 KLHL34Q8N239 644 aa21.38■■□□□ 1.01
CCHCR1-228ENST00000509552 ZKSCAN5Q9Y2L8 839 aa21.38■■□□□ 1.01
CCHCR1-228ENST00000509552 TAF5LO75529 589 aa21.37■■□□□ 1.01
CCHCR1-228ENST00000509552 OFD1O75665 1012 aa21.37■■□□□ 1.01
CCHCR1-228ENST00000509552 TPRNQ4KMQ1 711 aa21.37■■□□□ 1.01
CCHCR1-228ENST00000509552 AFDNP55196 1824 aaKnown RBP21.37■■□□□ 1.01
CCHCR1-228ENST00000509552 RFX7Q2KHR2 1363 aa21.37■■□□□ 1.01
CCHCR1-228ENST00000509552 ZNF500O60304 480 aaPredicted RBP21.37■■□□□ 1.01
CCHCR1-228ENST00000509552 PKD1L3Q7Z443 1732 aa21.36■■□□□ 1.01
CCHCR1-228ENST00000509552 EDC3Q96F86 508 aaKnown RBP21.36■■□□□ 1.01
CCHCR1-228ENST00000509552 ARFGEF2Q9Y6D5 1785 aa21.35■■□□□ 1.01
CCHCR1-228ENST00000509552 PTMAP06454 111 aaKnown RBP21.35■■□□□ 1.01
CCHCR1-228ENST00000509552 USPL1Q5W0Q7 1092 aa21.35■■□□□ 1.01
CCHCR1-228ENST00000509552 DNAJC2Q99543 621 aaKnown RBP21.34■■□□□ 1.01
CCHCR1-228ENST00000509552 EIF2AK3Q9NZJ5 1116 aaKnown RBP21.34■■□□□ 1.01
CCHCR1-228ENST00000509552 CPDO75976 1380 aa21.34■■□□□ 1.01
CCHCR1-228ENST00000509552 SPATA31A3Q5VYP0 1347 aa21.34■■□□□ 1.01
CCHCR1-228ENST00000509552 DTNBO60941 627 aa21.33■■□□□ 1.01
CCHCR1-228ENST00000509552 TPM2P07951 284 aa21.33■■□□□ 1.01
CCHCR1-228ENST00000509552 CASP7P55210 303 aa21.33■■□□□ 1.01
CCHCR1-228ENST00000509552 KRT85P78386 507 aa21.33■■□□□ 1.01
CCHCR1-228ENST00000509552 LMBR1LQ6UX01 489 aa21.33■■□□□ 1.01
CCHCR1-228ENST00000509552 TCEANC2Q96MN5 208 aa21.33■■□□□ 1.01
CCHCR1-228ENST00000509552 HAUS7Q99871 368 aa21.33■■□□□ 1.01
CCHCR1-228ENST00000509552 DBNDD2Q9BQY9 259 aa21.33■■□□□ 1.01
CCHCR1-228ENST00000509552 U3KPZ7 1027 aaPredicted RBP21.33■■□□□ 1.01
CCHCR1-228ENST00000509552 TOB2Q14106 344 aaPredicted RBP21.33■■□□□ 1
CCHCR1-228ENST00000509552 CHMP3Q9Y3E7 222 aa21.32■■□□□ 1
CCHCR1-228ENST00000509552 TAF6LQ9Y6J9 622 aa21.32■■□□□ 1
CCHCR1-228ENST00000509552 MCMDC2Q4G0Z9 681 aa21.32■■□□□ 1
CCHCR1-228ENST00000509552 LAMB4A4D0S4 1761 aa21.31■■□□□ 1
CCHCR1-228ENST00000509552 COL9A3Q14050 684 aaPredicted RBP21.31■■□□□ 1
CCHCR1-228ENST00000509552 NEK1Q96PY6 1258 aa21.31■■□□□ 1
CCHCR1-228ENST00000509552 H7C1W4 665 aa21.3■■□□□ 1
CCHCR1-228ENST00000509552 CDC37L1Q7L3B6 337 aa21.3■■□□□ 1
CCHCR1-228ENST00000509552 CWC25Q9NXE8 425 aaPredicted RBP21.3■■□□□ 1
CCHCR1-228ENST00000509552 NDUFB9Q9Y6M9 179 aa21.3■■□□□ 1
CCHCR1-228ENST00000509552 PCDH11XQ9BZA7 1347 aa21.3■■□□□ 1
CCHCR1-228ENST00000509552 PCDH11YQ9BZA8 1340 aa21.3■■□□□ 1
CCHCR1-228ENST00000509552 HCLS1P14317 486 aaPredicted RBP21.29■■□□□ 1
CCHCR1-228ENST00000509552 PARP4Q9UKK3 1724 aaKnown RBP21.29■■□□□ 1
CCHCR1-228ENST00000509552 ZNF609O15014 1411 aa21.29■■□□□ 1
CCHCR1-228ENST00000509552 FOXO4P98177 505 aa21.29■■□□□ 1
CCHCR1-228ENST00000509552 STK3Q13188 491 aa21.29■■□□□ 1
CCHCR1-228ENST00000509552 ZCRB1Q8TBF4 217 aaKnown RBP21.29■■□□□ 1
CCHCR1-228ENST00000509552 NBPF26B4DH59 902 aa21.28■■□□□ 1
CCHCR1-228ENST00000509552 NBPF14Q5TI25 921 aa21.28■■□□□ 1
CCHCR1-228ENST00000509552 NBPF10Q6P3W6 841 aaKnown RBP21.28■■□□□ 1
CCHCR1-228ENST00000509552 DDX46Q7L014 1031 aaKnown RBP21.28■■□□□ 1
CCHCR1-228ENST00000509552 FERMT3Q86UX7 667 aa21.28■■□□□ 1
CCHCR1-228ENST00000509552 NBPF15Q8N660 670 aa21.28■■□□□ 1
CCHCR1-228ENST00000509552 KBTBD3Q8NAB2 608 aa21.28■■□□□ 1
CCHCR1-228ENST00000509552 ELP1O95163 1332 aa21.28■■□□□ 1
CCHCR1-228ENST00000509552 GIMAP6Q6P9H5 292 aa21.28■■□□□ 1
CCHCR1-228ENST00000509552 NEUROD6Q96NK8 337 aa21.28■■□□□ 1
CCHCR1-228ENST00000509552 ERVV-2B6SEH9 535 aa21.27■■□□□ 1
CCHCR1-228ENST00000509552 CCDC129Q6ZRS4 1044 aa21.27■■□□□ 1
CCHCR1-228ENST00000509552 SCAND2PQ9GZW5 306 aaPredicted RBP21.27■■□□□ 1
CCHCR1-228ENST00000509552 GPR108Q9NPR9 543 aa21.27■■□□□ 1
CCHCR1-228ENST00000509552 USP25Q9UHP3 1055 aa21.27■■□□□ 1
CCHCR1-228ENST00000509552 GLI3P10071 1580 aa21.27■■□□□ 1
CCHCR1-228ENST00000509552 TERF1P54274 439 aa21.27■□□□□ 0.99
CCHCR1-228ENST00000509552 TOM1L2Q6ZVM7 507 aa21.27■□□□□ 0.99
CCHCR1-228ENST00000509552 SEC62Q99442 399 aaKnown RBP21.27■□□□□ 0.99
CCHCR1-228ENST00000509552 STRCP1A6NGW2 1772 aa21.26■□□□□ 0.99
CCHCR1-228ENST00000509552 IL15P40933 162 aaPredicted RBP21.26■□□□□ 0.99
CCHCR1-228ENST00000509552 TTLL7Q6ZT98 887 aa21.26■□□□□ 0.99
CCHCR1-228ENST00000509552 TTC6Q86TZ1 520 aa21.26■□□□□ 0.99
CCHCR1-228ENST00000509552 TICAM2Q86XR7 235 aa21.26■□□□□ 0.99
CCHCR1-228ENST00000509552 GTF3C6Q969F1 213 aa21.26■□□□□ 0.99
CCHCR1-228ENST00000509552 FUCA2Q9BTY2 467 aa21.26■□□□□ 0.99
CCHCR1-228ENST00000509552 WDR17Q8IZU2 1322 aa21.26■□□□□ 0.99
CCHCR1-228ENST00000509552 SH3TC1Q8TE82 1336 aa21.26■□□□□ 0.99
CCHCR1-228ENST00000509552 HSP90B1P14625 803 aaKnown RBP21.26■□□□□ 0.99
CCHCR1-228ENST00000509552 Q6ZUG5 572 aa21.26■□□□□ 0.99
CCHCR1-228ENST00000509552 CYP21A2P08686 494 aa21.25■□□□□ 0.99
CCHCR1-228ENST00000509552 HMGB1P09429 215 aaKnown RBP21.25■□□□□ 0.99
CCHCR1-228ENST00000509552 ATG9AQ7Z3C6 839 aa21.25■□□□□ 0.99
CCHCR1-228ENST00000509552 CCDC191Q8NCU4 936 aa21.25■□□□□ 0.99
CCHCR1-228ENST00000509552 PRDM11Q9NQV5 511 aa21.25■□□□□ 0.99
CCHCR1-228ENST00000509552 PAG1Q9NWQ8 432 aa21.25■□□□□ 0.99
CCHCR1-228ENST00000509552 CCDC9Q9Y3X0 531 aaKnown RBP21.25■□□□□ 0.99
CCHCR1-228ENST00000509552 PALLDQ8WX93 1383 aa21.25■□□□□ 0.99
CCHCR1-228ENST00000509552 GOLGA6L4A6NEF3 574 aa21.24■□□□□ 0.99
CCHCR1-228ENST00000509552 ADCY5O95622 1261 aa21.24■□□□□ 0.99
CCHCR1-228ENST00000509552 HELLSQ9NRZ9 838 aa21.24■□□□□ 0.99
CCHCR1-228ENST00000509552 CCDC192P0DO97 292 aa21.24■□□□□ 0.99
CCHCR1-228ENST00000509552 FGD1P98174 961 aa21.24■□□□□ 0.99
CCHCR1-228ENST00000509552 GOLIM4O00461 696 aa21.23■□□□□ 0.99
CCHCR1-228ENST00000509552 KDM4AO75164 1064 aa21.23■□□□□ 0.99
CCHCR1-228ENST00000509552 SPATA32Q96LK8 384 aa21.23■□□□□ 0.99
CCHCR1-228ENST00000509552 A1BGP04217 495 aa21.23■□□□□ 0.99
CCHCR1-228ENST00000509552 CHGBP05060 677 aa21.23■□□□□ 0.99
CCHCR1-228ENST00000509552 FAM173BQ6P4H8 233 aa21.23■□□□□ 0.99
CCHCR1-228ENST00000509552 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP21.23■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms