RNA–Protein interactions for RNA: ENST00000493923.1

HDAC6-234, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 404 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-234ENST00000493923 SCN4AP35499 1836 aa10.53□□□□□ -0.72
HDAC6-234ENST00000493923 ATP5J2-PTCD1G3V325 749 aa10.52□□□□□ -0.73
HDAC6-234ENST00000493923 ELL2O00472 640 aaPredicted RBP10.52□□□□□ -0.73
HDAC6-234ENST00000493923 PPEF1O14829 653 aaPredicted RBP10.52□□□□□ -0.73
HDAC6-234ENST00000493923 HDGFL1Q5TGJ6 251 aa10.52□□□□□ -0.73
HDAC6-234ENST00000493923 PPP1R42Q7Z4L9 355 aa10.52□□□□□ -0.73
HDAC6-234ENST00000493923 RTKN2Q8IZC4 609 aa10.52□□□□□ -0.73
HDAC6-234ENST00000493923 C8orf58Q8NAV2 365 aa10.52□□□□□ -0.73
HDAC6-234ENST00000493923 RBM17Q96I25 401 aaKnown RBP10.52□□□□□ -0.73
HDAC6-234ENST00000493923 CFAP44Q96MT7 982 aa10.52□□□□□ -0.73
HDAC6-234ENST00000493923 PSMD1Q99460 953 aa10.52□□□□□ -0.73
HDAC6-234ENST00000493923 RNF123Q5XPI4 1314 aa10.52□□□□□ -0.73
HDAC6-234ENST00000493923 FMR1Q06787 632 aaKnown RBP eCLIP10.51□□□□□ -0.73
HDAC6-234ENST00000493923 CHADLQ6NUI6 762 aa10.51□□□□□ -0.73
HDAC6-234ENST00000493923 PIP4P2Q8N4L2 257 aa10.51□□□□□ -0.73
HDAC6-234ENST00000493923 JMYQ8N9B5 988 aa10.51□□□□□ -0.73
HDAC6-234ENST00000493923 ISCA1Q9BUE6 129 aa10.51□□□□□ -0.73
HDAC6-234ENST00000493923 PHAXQ9H814 394 aaKnown RBP10.51□□□□□ -0.73
HDAC6-234ENST00000493923 DUOX1Q9NRD9 1551 aa10.51□□□□□ -0.73
HDAC6-234ENST00000493923 MKRN4PQ13434 485 aaPredicted RBP10.5□□□□□ -0.73
HDAC6-234ENST00000493923 TSPYL6Q8N831 410 aa10.5□□□□□ -0.73
HDAC6-234ENST00000493923 JARID2Q92833 1246 aaPredicted RBP10.5□□□□□ -0.73
HDAC6-234ENST00000493923 FAM89AQ96GI7 184 aa10.5□□□□□ -0.73
HDAC6-234ENST00000493923 NLRP3Q96P20 1036 aa10.5□□□□□ -0.73
HDAC6-234ENST00000493923 TRMT112Q9UI30 125 aaKnown RBP10.5□□□□□ -0.73
HDAC6-234ENST00000493923 ITGBL1O95965 494 aaPredicted RBP10.49□□□□□ -0.73
HDAC6-234ENST00000493923 EPS15P42566 896 aa10.49□□□□□ -0.73
HDAC6-234ENST00000493923 AOC3Q16853 763 aa10.49□□□□□ -0.73
HDAC6-234ENST00000493923 EAPPQ56P03 285 aaPredicted RBP10.49□□□□□ -0.73
HDAC6-234ENST00000493923 ANKRD13DQ6ZTN6 518 aa10.49□□□□□ -0.73
HDAC6-234ENST00000493923 PLBD2Q8NHP8 589 aa10.49□□□□□ -0.73
HDAC6-234ENST00000493923 IFT57Q9NWB7 429 aa10.49□□□□□ -0.73
HDAC6-234ENST00000493923 ATP6V0A2Q9Y487 856 aa10.49□□□□□ -0.73
HDAC6-234ENST00000493923 GJA3Q9Y6H8 435 aa10.49□□□□□ -0.73
HDAC6-234ENST00000493923 PASKQ96RG2 1323 aa10.49□□□□□ -0.73
HDAC6-234ENST00000493923 LRRC37AA6NMS7 1700 aa10.48□□□□□ -0.73
HDAC6-234ENST00000493923 HOXB7P09629 217 aa10.48□□□□□ -0.73
HDAC6-234ENST00000493923 EPHX2P34913 555 aa10.48□□□□□ -0.73
HDAC6-234ENST00000493923 SCNN1DP51172 638 aa10.48□□□□□ -0.73
HDAC6-234ENST00000493923 IFFO2Q5TF58 517 aa10.48□□□□□ -0.73
HDAC6-234ENST00000493923 MAP1SQ66K74 1059 aaPredicted RBP10.48□□□□□ -0.73
HDAC6-234ENST00000493923 LARGE2Q8N3Y3 721 aa10.48□□□□□ -0.73
HDAC6-234ENST00000493923 CELF1Q92879 486 aaKnown RBP10.48□□□□□ -0.73
HDAC6-234ENST00000493923 TSR2Q969E8 191 aaKnown RBP10.48□□□□□ -0.73
HDAC6-234ENST00000493923 PPP4R2Q9NY27 417 aa10.48□□□□□ -0.73
HDAC6-234ENST00000493923 DBF4Q9UBU7 674 aaPredicted RBP10.48□□□□□ -0.73
HDAC6-234ENST00000493923 MKRN1Q9UHC7 482 aaKnown RBP10.48□□□□□ -0.73
HDAC6-234ENST00000493923 HACL1Q9UJ83 578 aa10.48□□□□□ -0.73
HDAC6-234ENST00000493923 SH3TC1Q8TE82 1336 aa10.48□□□□□ -0.73
HDAC6-234ENST00000493923 SHTN1A0MZ66 631 aa10.47□□□□□ -0.73
HDAC6-234ENST00000493923 PPIP5K2O43314 1243 aa10.47□□□□□ -0.73
HDAC6-234ENST00000493923 FXR2P51116 673 aaKnown RBP eCLIP10.47□□□□□ -0.73
HDAC6-234ENST00000493923 GRAPQ13588 217 aa10.47□□□□□ -0.73
HDAC6-234ENST00000493923 HSP90AB3PQ58FF7 597 aa10.47□□□□□ -0.73
HDAC6-234ENST00000493923 COL13A1Q5TAT6 717 aaPredicted RBP10.47□□□□□ -0.73
HDAC6-234ENST00000493923 CC2D2BQ6DHV5 1058 aa10.47□□□□□ -0.73
HDAC6-234ENST00000493923 LDHDQ86WU2 507 aa10.47□□□□□ -0.73
HDAC6-234ENST00000493923 SP8Q8IXZ3 490 aa10.47□□□□□ -0.73
HDAC6-234ENST00000493923 GPC2Q8N158 579 aa10.47□□□□□ -0.73
HDAC6-234ENST00000493923 GRAPLQ8TC17 118 aaPredicted RBP10.47□□□□□ -0.73
HDAC6-234ENST00000493923 GPR101Q96P66 508 aaPredicted RBP10.47□□□□□ -0.73
HDAC6-234ENST00000493923 RTFDC1Q9BY42 306 aaPredicted RBP10.47□□□□□ -0.73
HDAC6-234ENST00000493923 IQCA1LA6NCM1 817 aa10.46□□□□□ -0.73
HDAC6-234ENST00000493923 YDJCA8MPS7 323 aa10.46□□□□□ -0.73
HDAC6-234ENST00000493923 ANP32AP39687 249 aaKnown RBP10.46□□□□□ -0.73
HDAC6-234ENST00000493923 GNAI1P63096 354 aa10.46□□□□□ -0.73
HDAC6-234ENST00000493923 CXCL9Q07325 125 aa10.46□□□□□ -0.73
HDAC6-234ENST00000493923 G2E3Q7L622 706 aa10.46□□□□□ -0.73
HDAC6-234ENST00000493923 JDP2Q8WYK2 163 aa10.46□□□□□ -0.73
HDAC6-234ENST00000493923 SEC31BQ9NQW1 1179 aa10.46□□□□□ -0.73
HDAC6-234ENST00000493923 HYPKQ9NX55 129 aa10.46□□□□□ -0.73
HDAC6-234ENST00000493923 CLEC11AQ9Y240 323 aa10.46□□□□□ -0.73
HDAC6-234ENST00000493923 BBOX1O75936 387 aa10.45□□□□□ -0.74
HDAC6-234ENST00000493923 EIF6P56537 245 aaKnown RBP10.45□□□□□ -0.74
HDAC6-234ENST00000493923 TRIM28Q13263 835 aaKnown RBP10.45□□□□□ -0.74
HDAC6-234ENST00000493923 SF3B3Q15393 1217 aaKnown RBP10.45□□□□□ -0.74
HDAC6-234ENST00000493923 DDX46Q7L014 1031 aaKnown RBP10.45□□□□□ -0.74
HDAC6-234ENST00000493923 NIM1KQ8IY84 436 aa10.45□□□□□ -0.74
HDAC6-234ENST00000493923 MPNDQ8N594 471 aa10.45□□□□□ -0.74
HDAC6-234ENST00000493923 CCDC136Q96JN2 1154 aa10.45□□□□□ -0.74
HDAC6-234ENST00000493923 MYD88Q99836 296 aa10.45□□□□□ -0.74
HDAC6-234ENST00000493923 KCNQ5Q9NR82 932 aa10.45□□□□□ -0.74
HDAC6-234ENST00000493923 CREBZFQ9NS37 354 aa10.45□□□□□ -0.74
HDAC6-234ENST00000493923 SCN9AQ15858 1988 aa10.45□□□□□ -0.74
HDAC6-234ENST00000493923 WTIPA6NIX2 430 aaPredicted RBP10.44□□□□□ -0.74
HDAC6-234ENST00000493923 TRAF5O00463 557 aa10.44□□□□□ -0.74
HDAC6-234ENST00000493923 IRS4O14654 1257 aaPredicted RBP10.44□□□□□ -0.74
HDAC6-234ENST00000493923 RAD17O75943 681 aa10.44□□□□□ -0.74
HDAC6-234ENST00000493923 IGKV5-2P06315 115 aa10.44□□□□□ -0.74
HDAC6-234ENST00000493923 HSPA1AP0DMV8 641 aaKnown RBP10.44□□□□□ -0.74
HDAC6-234ENST00000493923 HSPA1BP0DMV9 641 aaKnown RBP10.44□□□□□ -0.74
HDAC6-234ENST00000493923 GPSM2P81274 684 aa10.44□□□□□ -0.74
HDAC6-234ENST00000493923 KIAA2012Q0VF49 1180 aa10.44□□□□□ -0.74
HDAC6-234ENST00000493923 DLK2Q6UY11 383 aa10.44□□□□□ -0.74
HDAC6-234ENST00000493923 DPP8Q6V1X1 898 aaPredicted RBP10.44□□□□□ -0.74
HDAC6-234ENST00000493923 WWC1Q8IX03 1113 aa10.44□□□□□ -0.74
HDAC6-234ENST00000493923 CNTROBQ8N137 903 aa10.44□□□□□ -0.74
HDAC6-234ENST00000493923 CCDC85AQ96PX6 553 aaPredicted RBP10.44□□□□□ -0.74
HDAC6-234ENST00000493923 POLLQ9UGP5 575 aa10.44□□□□□ -0.74
HDAC6-234ENST00000493923 POLR2AP24928 1970 aaKnown RBP10.43□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 124.5 ms