RNA–Protein interactions for RNA: ENST00000482171.5

SMPD4-218, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 2

Gene SMPD4, Length 4,298 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-218ENST00000482171 RBM5P52756 815 aaKnown RBP eCLIP13.25□□□□□ -0.29
SMPD4-218ENST00000482171 GCKRQ14397 625 aa13.25□□□□□ -0.29
SMPD4-218ENST00000482171 NBPF5PQ86XG9 351 aaPredicted RBP13.25□□□□□ -0.29
SMPD4-218ENST00000482171 EDC3Q96F86 508 aaKnown RBP13.25□□□□□ -0.29
SMPD4-218ENST00000482171 SH2B1Q9NRF2 756 aaPredicted RBP13.25□□□□□ -0.29
SMPD4-218ENST00000482171 HCLS1P14317 486 aaPredicted RBP13.25□□□□□ -0.29
SMPD4-218ENST00000482171 RAB3GAP1Q15042 981 aa13.25□□□□□ -0.29
SMPD4-218ENST00000482171 BRMS1Q9HCU9 246 aa13.25□□□□□ -0.29
SMPD4-218ENST00000482171 GPS2Q13227 327 aa13.24□□□□□ -0.29
SMPD4-218ENST00000482171 TTLL7Q6ZT98 887 aa13.24□□□□□ -0.29
SMPD4-218ENST00000482171 PLBD2Q8NHP8 589 aa13.24□□□□□ -0.29
SMPD4-218ENST00000482171 ZKSCAN5Q9Y2L8 839 aa13.24□□□□□ -0.29
SMPD4-218ENST00000482171 ZNF335Q9H4Z2 1342 aaPredicted RBP13.24□□□□□ -0.29
SMPD4-218ENST00000482171 LMTK2Q8IWU2 1503 aa13.24□□□□□ -0.29
SMPD4-218ENST00000482171 RANBP6O60518 1105 aaKnown RBP13.24□□□□□ -0.29
SMPD4-218ENST00000482171 AK7Q96M32 723 aa13.24□□□□□ -0.29
SMPD4-218ENST00000482171 ARGLU1Q9NWB6 273 aaPredicted RBP13.24□□□□□ -0.29
SMPD4-218ENST00000482171 AXIN2Q9Y2T1 843 aa13.24□□□□□ -0.29
SMPD4-218ENST00000482171 QRICH2Q9H0J4 1663 aa13.24□□□□□ -0.29
SMPD4-218ENST00000482171 STX6O43752 255 aa13.24□□□□□ -0.29
SMPD4-218ENST00000482171 GOLGA8BA8MQT2 603 aa13.23□□□□□ -0.29
SMPD4-218ENST00000482171 RFC4P35249 363 aa13.23□□□□□ -0.29
SMPD4-218ENST00000482171 CDC5LQ99459 802 aaKnown RBP13.23□□□□□ -0.29
SMPD4-218ENST00000482171 CAMSAP1Q5T5Y3 1602 aa13.23□□□□□ -0.29
SMPD4-218ENST00000482171 CCDC129Q6ZRS4 1044 aa13.23□□□□□ -0.29
SMPD4-218ENST00000482171 CCDC24Q8N4L8 307 aa13.23□□□□□ -0.29
SMPD4-218ENST00000482171 PAG1Q9NWQ8 432 aa13.23□□□□□ -0.29
SMPD4-218ENST00000482171 CGNQ9P2M7 1197 aaKnown RBP13.23□□□□□ -0.29
SMPD4-218ENST00000482171 ERBB3P21860 1342 aa13.23□□□□□ -0.29
SMPD4-218ENST00000482171 TTC41PQ6P2S7 1318 aa13.23□□□□□ -0.29
SMPD4-218ENST00000482171 SLC9C2Q5TAH2 1124 aa13.23□□□□□ -0.29
SMPD4-218ENST00000482171 FILIP1Q7Z7B0 1213 aa13.23□□□□□ -0.29
SMPD4-218ENST00000482171 MICU3Q86XE3 530 aa13.23□□□□□ -0.29
SMPD4-218ENST00000482171 SIRT2Q8IXJ6 389 aa13.23□□□□□ -0.29
SMPD4-218ENST00000482171 RIMBP3CA6NJZ7 1639 aa13.23□□□□□ -0.29
SMPD4-218ENST00000482171 RIMBP3BA6NNM3 1639 aa13.23□□□□□ -0.29
SMPD4-218ENST00000482171 RIMBP3Q9UFD9 1639 aa13.23□□□□□ -0.29
SMPD4-218ENST00000482171 MCM5P33992 734 aa13.22□□□□□ -0.29
SMPD4-218ENST00000482171 FAM98CQ17RN3 349 aaKnown RBP13.22□□□□□ -0.29
SMPD4-218ENST00000482171 DZIP1Q86YF9 867 aaKnown RBP13.22□□□□□ -0.29
SMPD4-218ENST00000482171 FAM227BQ96M60 508 aa13.22□□□□□ -0.29
SMPD4-218ENST00000482171 CDK12Q9NYV4 1490 aaPredicted RBP13.22□□□□□ -0.29
SMPD4-218ENST00000482171 C6orf229H3BNL8 230 aa13.22□□□□□ -0.29
SMPD4-218ENST00000482171 IFIT3O14879 490 aaKnown RBP13.22□□□□□ -0.29
SMPD4-218ENST00000482171 ADCY5O95622 1261 aa13.22□□□□□ -0.29
SMPD4-218ENST00000482171 MCMDC2Q4G0Z9 681 aa13.22□□□□□ -0.29
SMPD4-218ENST00000482171 ZSCAN29Q8IWY8 852 aaPredicted RBP13.22□□□□□ -0.29
SMPD4-218ENST00000482171 AK2P54819 239 aa13.22□□□□□ -0.29
SMPD4-218ENST00000482171 CCDC152Q4G0S7 254 aa13.22□□□□□ -0.29
SMPD4-218ENST00000482171 BEND3Q5T5X7 828 aa13.22□□□□□ -0.29
SMPD4-218ENST00000482171 HOOK1Q9UJC3 728 aaKnown RBP13.22□□□□□ -0.29
SMPD4-218ENST00000482171 JAG2Q9Y219 1238 aa13.22□□□□□ -0.29
SMPD4-218ENST00000482171 IGSF3O75054 1194 aa13.21□□□□□ -0.29
SMPD4-218ENST00000482171 USP5P45974 858 aa13.21□□□□□ -0.29
SMPD4-218ENST00000482171 LRSAM1Q6UWE0 723 aa13.21□□□□□ -0.29
SMPD4-218ENST00000482171 NUP62CLQ9H1M0 184 aa13.21□□□□□ -0.29
SMPD4-218ENST00000482171 A0A1B0GUL7 405 aa13.21□□□□□ -0.29
SMPD4-218ENST00000482171 NEURL1BA8MQ27 555 aa13.21□□□□□ -0.29
SMPD4-218ENST00000482171 TTC12Q9H892 705 aaPredicted RBP13.21□□□□□ -0.29
SMPD4-218ENST00000482171 RPGRQ92834 1020 aaKnown RBP13.21□□□□□ -0.3
SMPD4-218ENST00000482171 C8orf76Q96K31 380 aa13.21□□□□□ -0.3
SMPD4-218ENST00000482171 C16orf45Q96MC5 204 aaPredicted RBP13.21□□□□□ -0.3
SMPD4-218ENST00000482171 CFAP45Q9UL16 551 aa13.21□□□□□ -0.3
SMPD4-218ENST00000482171 CLTCQ00610 1675 aaKnown RBP13.21□□□□□ -0.3
SMPD4-218ENST00000482171 SETDB2Q96T68 719 aa13.2□□□□□ -0.3
SMPD4-218ENST00000482171 CKAP2LQ8IYA6 745 aa13.2□□□□□ -0.3
SMPD4-218ENST00000482171 UTP14AQ9BVJ6 771 aaKnown RBP13.2□□□□□ -0.3
SMPD4-218ENST00000482171 TNNI3KQ59H18 835 aa13.2□□□□□ -0.3
SMPD4-218ENST00000482171 CREB3L3Q68CJ9 461 aa13.2□□□□□ -0.3
SMPD4-218ENST00000482171 ANKRD18AQ8IVF6 992 aa13.2□□□□□ -0.3
SMPD4-218ENST00000482171 FPGT-TNNI3KV9GXZ4 949 aa13.2□□□□□ -0.3
SMPD4-218ENST00000482171 PTPRMP28827 1452 aa13.19□□□□□ -0.3
SMPD4-218ENST00000482171 EYA2O00167 538 aa13.19□□□□□ -0.3
SMPD4-218ENST00000482171 SMC2O95347 1197 aa13.19□□□□□ -0.3
SMPD4-218ENST00000482171 ANAPC15P60006 121 aa13.19□□□□□ -0.3
SMPD4-218ENST00000482171 SSH3Q8TE77 659 aa13.19□□□□□ -0.3
SMPD4-218ENST00000482171 PCMTD1Q96MG8 357 aaPredicted RBP13.19□□□□□ -0.3
SMPD4-218ENST00000482171 NEXMIFQ5QGS0 1516 aa13.19□□□□□ -0.3
SMPD4-218ENST00000482171 CDKL5O76039 1030 aa13.19□□□□□ -0.3
SMPD4-218ENST00000482171 HMGB1P09429 215 aaKnown RBP13.19□□□□□ -0.3
SMPD4-218ENST00000482171 CCDC183Q5T5S1 534 aa13.19□□□□□ -0.3
SMPD4-218ENST00000482171 ASAP1Q9ULH1 1129 aa13.19□□□□□ -0.3
SMPD4-218ENST00000482171 POLR3DP05423 398 aaPredicted RBP13.19□□□□□ -0.3
SMPD4-218ENST00000482171 SF3B2Q13435 895 aaKnown RBP13.19□□□□□ -0.3
SMPD4-218ENST00000482171 Q6ZUG5 572 aa13.19□□□□□ -0.3
SMPD4-218ENST00000482171 TRERF1Q96PN7 1200 aa13.19□□□□□ -0.3
SMPD4-218ENST00000482171 CTDP1Q9Y5B0 961 aaPredicted RBP13.19□□□□□ -0.3
SMPD4-218ENST00000482171 EAF2Q96CJ1 260 aaPredicted RBP13.19□□□□□ -0.3
SMPD4-218ENST00000482171 ITGA6P23229 1130 aa13.18□□□□□ -0.3
SMPD4-218ENST00000482171 NOLC1Q14978 699 aaKnown RBP eCLIP13.18□□□□□ -0.33e-9■□□□□ 10.1
SMPD4-218ENST00000482171 OLFM4Q6UX06 510 aa13.18□□□□□ -0.3
SMPD4-218ENST00000482171 JMYQ8N9B5 988 aa13.18□□□□□ -0.3
SMPD4-218ENST00000482171 NLRP3Q96P20 1036 aa13.18□□□□□ -0.3
SMPD4-218ENST00000482171 MKNK2Q9HBH9 465 aa13.18□□□□□ -0.3
SMPD4-218ENST00000482171 ARHGEF40Q8TER5 1519 aa13.18□□□□□ -0.3
SMPD4-218ENST00000482171 MIGA1Q8NAN2 632 aa13.18□□□□□ -0.3
SMPD4-218ENST00000482171 CCDC191Q8NCU4 936 aa13.18□□□□□ -0.3
SMPD4-218ENST00000482171 SMARCC1Q92922 1105 aaPredicted RBP13.18□□□□□ -0.3
SMPD4-218ENST00000482171 RBSNQ9H1K0 784 aa13.18□□□□□ -0.3
SMPD4-218ENST00000482171 HMG20BQ9P0W2 317 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms