RNA–Protein interactions for RNA: ENST00000474929.1

USP54-211, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 590 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-211ENST00000474929 PRDM6Q9NQX0 595 aa11□□□□□ -0.65
USP54-211ENST00000474929 STXBP5LQ9Y2K9 1186 aa11□□□□□ -0.65
USP54-211ENST00000474929 PTPN22Q9Y2R2 807 aa11□□□□□ -0.65
USP54-211ENST00000474929 SULT6B1Q6IMI4 303 aa10.99□□□□□ -0.65
USP54-211ENST00000474929 HTATIP2Q9BUP3 242 aa10.99□□□□□ -0.65
USP54-211ENST00000474929 GGA3Q9NZ52 723 aa10.99□□□□□ -0.65
USP54-211ENST00000474929 BRCA2P51587 3418 aa10.99□□□□□ -0.65
USP54-211ENST00000474929 DDX60Q8IY21 1712 aaKnown RBP10.98□□□□□ -0.65
USP54-211ENST00000474929 RAD17O75943 681 aa10.98□□□□□ -0.65
USP54-211ENST00000474929 TNNT2P45379 298 aaPredicted RBP10.98□□□□□ -0.65
USP54-211ENST00000474929 TCIRG1Q13488 830 aa10.98□□□□□ -0.65
USP54-211ENST00000474929 SLC4A8Q2Y0W8 1093 aa10.98□□□□□ -0.65
USP54-211ENST00000474929 ZNF790Q6PG37 636 aa10.98□□□□□ -0.65
USP54-211ENST00000474929 DPP8Q6V1X1 898 aaPredicted RBP10.98□□□□□ -0.65
USP54-211ENST00000474929 ZNF333Q96JL9 665 aa10.98□□□□□ -0.65
USP54-211ENST00000474929 LGR6Q9HBX8 967 aa10.98□□□□□ -0.65
USP54-211ENST00000474929 ATP6V0A2Q9Y487 856 aa10.98□□□□□ -0.65
USP54-211ENST00000474929 NR2E3Q9Y5X4 410 aa10.98□□□□□ -0.65
USP54-211ENST00000474929 INHBEP58166 350 aa10.97□□□□□ -0.65
USP54-211ENST00000474929 TEFQ10587 303 aa10.97□□□□□ -0.65
USP54-211ENST00000474929 KIF4BQ2VIQ3 1234 aa10.97□□□□□ -0.65
USP54-211ENST00000474929 TBC1D10BQ4KMP7 808 aaPredicted RBP10.97□□□□□ -0.65
USP54-211ENST00000474929 AEBP1Q8IUX7 1158 aa10.97□□□□□ -0.65
USP54-211ENST00000474929 PHF6Q8IWS0 365 aaKnown RBP eCLIP10.97□□□□□ -0.65
USP54-211ENST00000474929 NECTIN2Q92692 538 aa10.97□□□□□ -0.65
USP54-211ENST00000474929 PRO3102Q9H379 93 aa10.97□□□□□ -0.65
USP54-211ENST00000474929 ABCC12Q96J65 1359 aa10.97□□□□□ -0.65
USP54-211ENST00000474929 PRAMEF22A3QJZ6 481 aa10.96□□□□□ -0.65
USP54-211ENST00000474929 NF2P35240 595 aa10.96□□□□□ -0.65
USP54-211ENST00000474929 SAMD7Q7Z3H4 446 aa10.96□□□□□ -0.65
USP54-211ENST00000474929 DPF3Q92784 378 aa10.96□□□□□ -0.65
USP54-211ENST00000474929 CARD14Q9BXL6 1004 aa10.96□□□□□ -0.65
USP54-211ENST00000474929 EFCC1Q9HA90 598 aa10.96□□□□□ -0.65
USP54-211ENST00000474929 CENPFP49454 3210 aa10.96□□□□□ -0.66
USP54-211ENST00000474929 KDM3BQ7LBC6 1761 aa10.95□□□□□ -0.66
USP54-211ENST00000474929 A1BGP04217 495 aa10.95□□□□□ -0.66
USP54-211ENST00000474929 SLC9C1Q4G0N8 1177 aa10.95□□□□□ -0.66
USP54-211ENST00000474929 POLR2AP24928 1970 aaKnown RBP10.95□□□□□ -0.66
USP54-211ENST00000474929 MANSC4A6NHS7 340 aaPredicted RBP10.94□□□□□ -0.66
USP54-211ENST00000474929 FAM177BA6PVY3 158 aa10.94□□□□□ -0.66
USP54-211ENST00000474929 OTUD7BQ6GQQ9 843 aa10.94□□□□□ -0.66
USP54-211ENST00000474929 TMC4Q7Z404 712 aa10.94□□□□□ -0.66
USP54-211ENST00000474929 MPNDQ8N594 471 aa10.94□□□□□ -0.66
USP54-211ENST00000474929 NKX2-3Q8TAU0 364 aa10.94□□□□□ -0.66
USP54-211ENST00000474929 UNC80Q8N2C7 3258 aa10.94□□□□□ -0.66
USP54-211ENST00000474929 NEUROD1Q13562 356 aa10.93□□□□□ -0.66
USP54-211ENST00000474929 ZBTB12Q9Y330 459 aaPredicted RBP10.93□□□□□ -0.66
USP54-211ENST00000474929 SIPA1L3O60292 1781 aaPredicted RBP10.93□□□□□ -0.66
USP54-211ENST00000474929 BBOX1O75936 387 aa10.92□□□□□ -0.66
USP54-211ENST00000474929 TTLL12Q14166 644 aaPredicted RBP10.92□□□□□ -0.66
USP54-211ENST00000474929 DLK2Q6UY11 383 aa10.92□□□□□ -0.66
USP54-211ENST00000474929 DEFB123Q8N688 67 aa10.92□□□□□ -0.66
USP54-211ENST00000474929 LAMB1P07942 1786 aa10.92□□□□□ -0.66
USP54-211ENST00000474929 LAMA3Q16787 3333 aa10.91□□□□□ -0.66
USP54-211ENST00000474929 SHTN1A0MZ66 631 aa10.91□□□□□ -0.66
USP54-211ENST00000474929 PSMD14O00487 310 aa10.91□□□□□ -0.66
USP54-211ENST00000474929 TCERG1O14776 1098 aaKnown RBP10.91□□□□□ -0.66
USP54-211ENST00000474929 PLA2G5P39877 138 aa10.91□□□□□ -0.66
USP54-211ENST00000474929 ARMC9Q7Z3E5 817 aa10.91□□□□□ -0.66
USP54-211ENST00000474929 SP8Q8IXZ3 490 aa10.91□□□□□ -0.66
USP54-211ENST00000474929 NLRP3Q96P20 1036 aa10.91□□□□□ -0.66
USP54-211ENST00000474929 SIN3AQ96ST3 1273 aa10.91□□□□□ -0.66
USP54-211ENST00000474929 ERBB4Q15303 1308 aa10.9□□□□□ -0.66
USP54-211ENST00000474929 YDJCA8MPS7 323 aa10.9□□□□□ -0.66
USP54-211ENST00000474929 ZBTB48P10074 688 aaPredicted RBP10.9□□□□□ -0.66
USP54-211ENST00000474929 COL9A1P20849 921 aa10.9□□□□□ -0.66
USP54-211ENST00000474929 RBM26Q5T8P6 1007 aaKnown RBP10.9□□□□□ -0.66
USP54-211ENST00000474929 ANGEL2Q5VTE6 544 aaKnown RBP10.9□□□□□ -0.66
USP54-211ENST00000474929 NUTM1Q86Y26 1132 aa10.9□□□□□ -0.66
USP54-211ENST00000474929 IFNL1Q8IU54 200 aa10.9□□□□□ -0.66
USP54-211ENST00000474929 CD99L2Q8TCZ2 262 aa10.9□□□□□ -0.66
USP54-211ENST00000474929 LRCH3Q96II8 777 aa10.9□□□□□ -0.66
USP54-211ENST00000474929 ABCC4O15439 1325 aa10.89□□□□□ -0.67
USP54-211ENST00000474929 ZNF646O15015 1829 aaPredicted RBP10.89□□□□□ -0.67
USP54-211ENST00000474929 ERVV-1B6SEH8 477 aa10.89□□□□□ -0.67
USP54-211ENST00000474929 UBE2Q2LH0YL09 131 aa10.89□□□□□ -0.67
USP54-211ENST00000474929 EGFRP00533 1210 aa10.89□□□□□ -0.67
USP54-211ENST00000474929 CAPN2P17655 700 aa10.89□□□□□ -0.67
USP54-211ENST00000474929 SP3Q02447 781 aa10.89□□□□□ -0.67
USP54-211ENST00000474929 PPP1R42Q7Z4L9 355 aa10.89□□□□□ -0.67
USP54-211ENST00000474929 SYMPKQ92797 1274 aaKnown RBP10.89□□□□□ -0.67
USP54-211ENST00000474929 LRRC37AA6NMS7 1700 aa10.89□□□□□ -0.67
USP54-211ENST00000474929 SOX1O00570 391 aaPredicted RBP10.88□□□□□ -0.67
USP54-211ENST00000474929 ZBTB7BO15156 539 aaPredicted RBP10.88□□□□□ -0.67
USP54-211ENST00000474929 SNRPA1P09661 255 aaKnown RBP10.88□□□□□ -0.67
USP54-211ENST00000474929 WASHC4Q2M389 1173 aa10.88□□□□□ -0.67
USP54-211ENST00000474929 SPRYD7Q5W111 196 aa10.88□□□□□ -0.67
USP54-211ENST00000474929 FAM122AQ96E09 287 aa10.88□□□□□ -0.67
USP54-211ENST00000474929 EYA3Q99504 573 aa10.88□□□□□ -0.67
USP54-211ENST00000474929 DUOX1Q9NRD9 1551 aa10.88□□□□□ -0.67
USP54-211ENST00000474929 UNCXA6NJT0 531 aa10.87□□□□□ -0.67
USP54-211ENST00000474929 IL13P35225 146 aa10.87□□□□□ -0.67
USP54-211ENST00000474929 MKRN3Q13064 507 aaKnown RBP10.87□□□□□ -0.67
USP54-211ENST00000474929 MTHFSDQ2M296 383 aaKnown RBP10.87□□□□□ -0.67
USP54-211ENST00000474929 PARP10Q53GL7 1025 aa10.87□□□□□ -0.67
USP54-211ENST00000474929 KIF6Q6ZMV9 814 aa10.87□□□□□ -0.67
USP54-211ENST00000474929 GAS2L2Q8NHY3 880 aa10.87□□□□□ -0.67
USP54-211ENST00000474929 R3HDMLQ9H3Y0 253 aa10.87□□□□□ -0.67
USP54-211ENST00000474929 LAMB4A4D0S4 1761 aa10.86□□□□□ -0.67
USP54-211ENST00000474929 BTBD11A6QL63 1104 aa10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms