RNA–Protein interactions for RNA: ENST00000468211.6

PTCH1-210, Transcript of patched 1, humanhuman

TSL 1 (best) BASIC

Gene PTCH1, Length 1,254 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-210ENST00000468211 EPS15P42566 896 aa31.77■■■□□ 2.68
PTCH1-210ENST00000468211 COL13A1Q5TAT6 717 aaPredicted RBP31.77■■■□□ 2.68
PTCH1-210ENST00000468211 C8orf58Q8NAV2 365 aa31.77■■■□□ 2.68
PTCH1-210ENST00000468211 DUOX1Q9NRD9 1551 aa31.77■■■□□ 2.68
PTCH1-210ENST00000468211 RTL5Q5HYW3 569 aaPredicted RBP31.76■■■□□ 2.67
PTCH1-210ENST00000468211 DPP8Q6V1X1 898 aaPredicted RBP31.76■■■□□ 2.67
PTCH1-210ENST00000468211 MPNDQ8N594 471 aa31.76■■■□□ 2.67
PTCH1-210ENST00000468211 HSPA1AP0DMV8 641 aaKnown RBP31.74■■■□□ 2.67
PTCH1-210ENST00000468211 HSPA1BP0DMV9 641 aaKnown RBP31.74■■■□□ 2.67
PTCH1-210ENST00000468211 CALD1Q05682 793 aaKnown RBP31.74■■■□□ 2.67
PTCH1-210ENST00000468211 CNTROBQ8N137 903 aa31.74■■■□□ 2.67
PTCH1-210ENST00000468211 VPS33BQ9H267 617 aa31.74■■■□□ 2.67
PTCH1-210ENST00000468211 TRIM28Q13263 835 aaKnown RBP31.73■■■□□ 2.67
PTCH1-210ENST00000468211 SUPT20HQ8NEM7 779 aa31.73■■■□□ 2.67
PTCH1-210ENST00000468211 LMOD1P29536 600 aaPredicted RBP31.72■■■□□ 2.67
PTCH1-210ENST00000468211 CXCL9Q07325 125 aa31.72■■■□□ 2.67
PTCH1-210ENST00000468211 CELF1Q92879 486 aaKnown RBP31.72■■■□□ 2.67
PTCH1-210ENST00000468211 ZNRF3Q9ULT6 936 aa31.72■■■□□ 2.67
PTCH1-210ENST00000468211 CNTNAP1P78357 1384 aa31.71■■■□□ 2.67
PTCH1-210ENST00000468211 TMEM88BA6NKF7 163 aa31.71■■■□□ 2.67
PTCH1-210ENST00000468211 SF3B3Q15393 1217 aaKnown RBP31.71■■■□□ 2.67
PTCH1-210ENST00000468211 RIC3Q7Z5B4 369 aa31.71■■■□□ 2.67
PTCH1-210ENST00000468211 KIAA2012Q0VF49 1180 aa31.7■■■□□ 2.67
PTCH1-210ENST00000468211 GOLGA2Q08379 1002 aa31.69■■■□□ 2.66
PTCH1-210ENST00000468211 TSPYL6Q8N831 410 aa31.69■■■□□ 2.66
PTCH1-210ENST00000468211 IRS4O14654 1257 aaPredicted RBP31.68■■■□□ 2.66
PTCH1-210ENST00000468211 FMR1Q06787 632 aaKnown RBP eCLIP31.67■■■□□ 2.66
PTCH1-210ENST00000468211 TMC4Q7Z404 712 aa31.67■■■□□ 2.66
PTCH1-210ENST00000468211 GPRC5DQ9NZD1 345 aa31.67■■■□□ 2.66
PTCH1-210ENST00000468211 TSR2Q969E8 191 aaKnown RBP31.66■■■□□ 2.66
PTCH1-210ENST00000468211 MYD88Q99836 296 aa31.66■■■□□ 2.66
PTCH1-210ENST00000468211 RAD17O75943 681 aa31.65■■■□□ 2.66
PTCH1-210ENST00000468211 USP50Q70EL3 339 aaPredicted RBP31.65■■■□□ 2.66
PTCH1-210ENST00000468211 TRPM7Q96QT4 1865 aa31.64■■■□□ 2.66
PTCH1-210ENST00000468211 YDJCA8MPS7 323 aa31.64■■■□□ 2.66
PTCH1-210ENST00000468211 VEGFBP49765 207 aa31.64■■■□□ 2.66
PTCH1-210ENST00000468211 GMPSP49915 693 aaPredicted RBP31.64■■■□□ 2.66
PTCH1-210ENST00000468211 ZBTB38Q8NAP3 1195 aaPredicted RBP31.64■■■□□ 2.66
PTCH1-210ENST00000468211 JARID2Q92833 1246 aaPredicted RBP31.64■■■□□ 2.66
PTCH1-210ENST00000468211 CIAPIN1Q6FI81 312 aa31.63■■■□□ 2.65
PTCH1-210ENST00000468211 GPSM2P81274 684 aa31.62■■■□□ 2.65
PTCH1-210ENST00000468211 CCDC30Q5VVM6 783 aa31.62■■■□□ 2.65
PTCH1-210ENST00000468211 NSFL1CQ9UNZ2 370 aaKnown RBP31.62■■■□□ 2.65
PTCH1-210ENST00000468211 SEC31BQ9NQW1 1179 aa31.61■■■□□ 2.65
PTCH1-210ENST00000468211 ADARB2Q9NS39 739 aaKnown RBP31.61■■■□□ 2.65
PTCH1-210ENST00000468211 TRAF5O00463 557 aa31.6■■■□□ 2.65
PTCH1-210ENST00000468211 WWC1Q8IX03 1113 aa31.6■■■□□ 2.65
PTCH1-210ENST00000468211 CCDC191Q8NCU4 936 aa31.6■■■□□ 2.65
PTCH1-210ENST00000468211 METTL22Q9BUU2 404 aaPredicted RBP31.6■■■□□ 2.65
PTCH1-210ENST00000468211 POLLQ9UGP5 575 aa31.6■■■□□ 2.65
PTCH1-210ENST00000468211 RPS8P62241 208 aaKnown RBP31.59■■■□□ 2.65
PTCH1-210ENST00000468211 CCDC27Q2M243 656 aa31.59■■■□□ 2.65
PTCH1-210ENST00000468211 SHTN1A0MZ66 631 aa31.58■■■□□ 2.65
PTCH1-210ENST00000468211 RASSF10A6NK89 507 aa31.58■■■□□ 2.65
PTCH1-210ENST00000468211 PCCAP05165 728 aaPredicted RBP31.58■■■□□ 2.65
PTCH1-210ENST00000468211 WASHC4Q2M389 1173 aa31.58■■■□□ 2.65
PTCH1-210ENST00000468211 GPR101Q96P66 508 aaPredicted RBP31.58■■■□□ 2.65
PTCH1-210ENST00000468211 RIMBP2O15034 1052 aa31.57■■■□□ 2.64
PTCH1-210ENST00000468211 TNIP1Q15025 636 aa31.57■■■□□ 2.64
PTCH1-210ENST00000468211 DBNDD1Q9H9R9 158 aa31.57■■■□□ 2.64
PTCH1-210ENST00000468211 CWC25Q9NXE8 425 aaPredicted RBP31.57■■■□□ 2.64
PTCH1-210ENST00000468211 MAP3K2Q9Y2U5 619 aa31.57■■■□□ 2.64
PTCH1-210ENST00000468211 C6orf229H3BNL8 230 aa31.56■■■□□ 2.64
PTCH1-210ENST00000468211 DEFB115Q30KQ5 88 aa31.56■■■□□ 2.64
PTCH1-210ENST00000468211 BCL2L13Q9BXK5 485 aa31.56■■■□□ 2.64
PTCH1-210ENST00000468211 DDX58O95786 925 aaKnown RBP31.55■■■□□ 2.64
PTCH1-210ENST00000468211 HIRAP54198 1017 aaPredicted RBP31.55■■■□□ 2.64
PTCH1-210ENST00000468211 CCDC85AQ96PX6 553 aaPredicted RBP31.55■■■□□ 2.64
PTCH1-210ENST00000468211 ABT1Q9ULW3 272 aaKnown RBP31.55■■■□□ 2.64
PTCH1-210ENST00000468211 SCN9AQ15858 1988 aa31.55■■■□□ 2.64
PTCH1-210ENST00000468211 CDHR2Q9BYE9 1310 aa31.54■■■□□ 2.64
PTCH1-210ENST00000468211 FOXN1O15353 648 aa31.54■■■□□ 2.64
PTCH1-210ENST00000468211 IGKV5-2P06315 115 aa31.54■■■□□ 2.64
PTCH1-210ENST00000468211 CST9Q5W186 159 aa31.54■■■□□ 2.64
PTCH1-210ENST00000468211 TNS4Q8IZW8 715 aa31.54■■■□□ 2.64
PTCH1-210ENST00000468211 TBC1D16Q8TBP0 767 aa31.54■■■□□ 2.64
PTCH1-210ENST00000468211 TRPM4Q8TD43 1214 aa31.54■■■□□ 2.64
PTCH1-210ENST00000468211 KCNQ5Q9NR82 932 aa31.54■■■□□ 2.64
PTCH1-210ENST00000468211 ZBTB12Q9Y330 459 aaPredicted RBP31.54■■■□□ 2.64
PTCH1-210ENST00000468211 PI4KAP2A4QPH2 592 aa31.53■■■□□ 2.64
PTCH1-210ENST00000468211 PDE8AO60658 829 aa31.53■■■□□ 2.64
PTCH1-210ENST00000468211 KSR2Q6VAB6 950 aa31.53■■■□□ 2.64
PTCH1-210ENST00000468211 G2E3Q7L622 706 aa31.53■■■□□ 2.64
PTCH1-210ENST00000468211 PI4KAP1Q8N8J0 262 aa31.53■■■□□ 2.64
PTCH1-210ENST00000468211 MRS2Q9HD23 443 aa31.53■■■□□ 2.64
PTCH1-210ENST00000468211 CNOT7Q9UIV1 285 aaKnown RBP31.53■■■□□ 2.64
PTCH1-210ENST00000468211 MYH3P11055 1940 aa31.53■■■□□ 2.64
PTCH1-210ENST00000468211 PSMD14O00487 310 aa31.52■■■□□ 2.64
PTCH1-210ENST00000468211 DOK7Q18PE1 504 aa31.52■■■□□ 2.64
PTCH1-210ENST00000468211 TWISTNBQ3B726 338 aaPredicted RBP31.52■■■□□ 2.64
PTCH1-210ENST00000468211 CHMP4AQ9BY43 222 aa31.52■■■□□ 2.64
PTCH1-210ENST00000468211 PGAP2Q9UHJ9 254 aa31.51■■■□□ 2.63
PTCH1-210ENST00000468211 SPEF2Q9C093 1822 aa31.51■■■□□ 2.63
PTCH1-210ENST00000468211 CCDC152Q4G0S7 254 aa31.5■■■□□ 2.63
PTCH1-210ENST00000468211 GLIS2Q9BZE0 524 aaPredicted RBP31.5■■■□□ 2.63
PTCH1-210ENST00000468211 POLR2AP24928 1970 aaKnown RBP31.49■■■□□ 2.63
PTCH1-210ENST00000468211 RTL9Q8NET4 1388 aa31.49■■■□□ 2.63
PTCH1-210ENST00000468211 ECE2O60344 883 aa31.49■■■□□ 2.63
PTCH1-210ENST00000468211 HSP90B1P14625 803 aaKnown RBP31.49■■■□□ 2.63
PTCH1-210ENST00000468211 ZEB1P37275 1124 aaPredicted RBP31.49■■■□□ 2.63
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms