RNA–Protein interactions for RNA: ENST00000450966.5

USP40-208, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene USP40, Length 5,616 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-208ENST00000450966 NSD3Q9BZ95 1437 aa15.21■□□□□ 0.02
USP40-208ENST00000450966 PEX19P40855 299 aa15.2■□□□□ 0.02
USP40-208ENST00000450966 NFE2L2Q16236 605 aa15.2■□□□□ 0.02
USP40-208ENST00000450966 GTF3C5Q9Y5Q8 519 aaPredicted RBP15.2■□□□□ 0.02
USP40-208ENST00000450966 STAMBPO95630 424 aa15.2■□□□□ 0.02
USP40-208ENST00000450966 SSBP05455 408 aaKnown RBP eCLIP15.2■□□□□ 0.02
USP40-208ENST00000450966 GBP1P32455 592 aa15.2■□□□□ 0.02
USP40-208ENST00000450966 STIM2Q9P246 746 aa15.2■□□□□ 0.02
USP40-208ENST00000450966 CKAP2LQ8IYA6 745 aa15.2■□□□□ 0.02
USP40-208ENST00000450966 PHACTR2O75167 634 aa15.2■□□□□ 0.02
USP40-208ENST00000450966 EVCP57679 992 aa15.2■□□□□ 0.02
USP40-208ENST00000450966 ARHGAP30Q7Z6I6 1101 aaPredicted RBP15.2■□□□□ 0.02
USP40-208ENST00000450966 ZNF287Q9HBT7 754 aa15.2■□□□□ 0.02
USP40-208ENST00000450966 ELF2Q15723 593 aa15.19■□□□□ 0.02
USP40-208ENST00000450966 C8orf34Q49A92 452 aa15.19■□□□□ 0.02
USP40-208ENST00000450966 TRIM4Q9C037 500 aa15.19■□□□□ 0.02
USP40-208ENST00000450966 FBXO3Q9UK99 471 aa15.19■□□□□ 0.02
USP40-208ENST00000450966 RIMS2Q9UQ26 1411 aa15.19■□□□□ 0.02
USP40-208ENST00000450966 MAP7Q14244 749 aa15.19■□□□□ 0.02
USP40-208ENST00000450966 HLTFQ14527 1009 aaKnown RBP eCLIP15.19■□□□□ 0.02
USP40-208ENST00000450966 CPLX4Q7Z7G2 160 aa15.19■□□□□ 0.02
USP40-208ENST00000450966 SLF2Q8IX21 1173 aa15.19■□□□□ 0.02
USP40-208ENST00000450966 CCDC97Q96F63 343 aaPredicted RBP15.19■□□□□ 0.02
USP40-208ENST00000450966 MRFAP1L1Q96HT8 127 aa15.19■□□□□ 0.02
USP40-208ENST00000450966 C19orf44Q9H6X5 657 aa15.19■□□□□ 0.02
USP40-208ENST00000450966 ALS2CR12Q96Q35 445 aa15.19■□□□□ 0.02
USP40-208ENST00000450966 PDRG1Q9NUG6 133 aa15.19■□□□□ 0.02
USP40-208ENST00000450966 FOXO3O43524 673 aa15.19■□□□□ 0.02
USP40-208ENST00000450966 PTGS1P23219 599 aa15.19■□□□□ 0.02
USP40-208ENST00000450966 YEATS4O95619 227 aa15.18■□□□□ 0.02
USP40-208ENST00000450966 TUBB2AQ13885 445 aa15.18■□□□□ 0.02
USP40-208ENST00000450966 CCDC40Q4G0X9 1142 aa15.18■□□□□ 0.02
USP40-208ENST00000450966 CCDC129Q6ZRS4 1044 aa15.18■□□□□ 0.02
USP40-208ENST00000450966 LRRC59Q96AG4 307 aaKnown RBP15.18■□□□□ 0.02
USP40-208ENST00000450966 DDX27Q96GQ7 796 aaKnown RBP15.18■□□□□ 0.02
USP40-208ENST00000450966 TUBB2BQ9BVA1 445 aa15.18■□□□□ 0.02
USP40-208ENST00000450966 SATB1Q01826 763 aa15.18■□□□□ 0.02
USP40-208ENST00000450966 CDCA7Q9BWT1 371 aaPredicted RBP15.18■□□□□ 0.02
USP40-208ENST00000450966 SH2B1Q9NRF2 756 aaPredicted RBP15.18■□□□□ 0.02
USP40-208ENST00000450966 NOS1P29475 1434 aa15.18■□□□□ 0.02
USP40-208ENST00000450966 SRGAP3O43295 1099 aa15.18■□□□□ 0.02
USP40-208ENST00000450966 TACC1O75410 805 aa15.18■□□□□ 0.02
USP40-208ENST00000450966 NBPF14Q5TI25 921 aa15.18■□□□□ 0.02
USP40-208ENST00000450966 DDX55Q8NHQ9 600 aaKnown RBP eCLIP15.18■□□□□ 0.02
USP40-208ENST00000450966 ATP10AO60312 1499 aa15.18■□□□□ 0.02
USP40-208ENST00000450966 LOC102724159A0A0B4J2E5 919 aa15.18■□□□□ 0.02
USP40-208ENST00000450966 ZEB2O60315 1214 aa15.18■□□□□ 0.02
USP40-208ENST00000450966 KRT18P05783 430 aaKnown RBP15.18■□□□□ 0.02
USP40-208ENST00000450966 PWP2Q15269 919 aaKnown RBP15.18■□□□□ 0.02
USP40-208ENST00000450966 IFNL2Q8IZJ0 200 aa15.18■□□□□ 0.02
USP40-208ENST00000450966 CTTNBP2Q8WZ74 1663 aa15.18■□□□□ 0.02
USP40-208ENST00000450966 LARP1Q6PKG0 1096 aaKnown RBP15.18■□□□□ 0.02
USP40-208ENST00000450966 TTC14Q96N46 770 aa15.18■□□□□ 0.02
USP40-208ENST00000450966 NEK11Q8NG66 645 aa15.17■□□□□ 0.02
USP40-208ENST00000450966 AKAP2Q9Y2D5 859 aa15.17■□□□□ 0.02
USP40-208ENST00000450966 WAPLQ7Z5K2 1190 aa15.17■□□□□ 0.02
USP40-208ENST00000450966 TACO1Q9BSH4 297 aaKnown RBP15.17■□□□□ 0.02
USP40-208ENST00000450966 STMN4Q9H169 189 aaPredicted RBP15.17■□□□□ 0.02
USP40-208ENST00000450966 RBSNQ9H1K0 784 aa15.17■□□□□ 0.02
USP40-208ENST00000450966 SAMD15Q9P1V8 674 aa15.17■□□□□ 0.02
USP40-208ENST00000450966 CEP126Q9P2H0 1117 aa15.17■□□□□ 0.02
USP40-208ENST00000450966 CFAP74Q9C0B2 1584 aa15.17■□□□□ 0.02
USP40-208ENST00000450966 A0A087WUV0 522 aaPredicted RBP15.17■□□□□ 0.02
USP40-208ENST00000450966 SYT10Q6XYQ8 523 aa15.17■□□□□ 0.02
USP40-208ENST00000450966 PFDN1O60925 122 aa15.17■□□□□ 0.02
USP40-208ENST00000450966 SLC4A2P04920 1241 aa15.17■□□□□ 0.02
USP40-208ENST00000450966 YY1AP1Q9H869 796 aa15.17■□□□□ 0.02
USP40-208ENST00000450966 NOL3O60936 208 aaKnown RBP15.16■□□□□ 0.02
USP40-208ENST00000450966 PPFIA3O75145 1194 aa15.16■□□□□ 0.02
USP40-208ENST00000450966 PPP2R3AQ06190 1150 aa15.16■□□□□ 0.02
USP40-208ENST00000450966 CAPN7Q9Y6W3 813 aa15.16■□□□□ 0.02
USP40-208ENST00000450966 ATP2B1P20020 1258 aa15.16■□□□□ 0.02
USP40-208ENST00000450966 IRX5P78411 483 aaPredicted RBP15.16■□□□□ 0.02
USP40-208ENST00000450966 PAF1Q8N7H5 531 aa15.16■□□□□ 0.02
USP40-208ENST00000450966 CTAGE9A4FU28 777 aa15.16■□□□□ 0.02
USP40-208ENST00000450966 PUS7Q96PZ0 661 aaKnown RBP15.16■□□□□ 0.02
USP40-208ENST00000450966 NEO1Q92859 1461 aa15.16■□□□□ 0.02
USP40-208ENST00000450966 LMTK3Q96Q04 1460 aa15.16■□□□□ 0.02
USP40-208ENST00000450966 MXRA7P84157 204 aa15.16■□□□□ 0.02
USP40-208ENST00000450966 EXOSC9Q06265 439 aaKnown RBP15.16■□□□□ 0.02
USP40-208ENST00000450966 MMS22LQ6ZRQ5 1243 aa15.16■□□□□ 0.02
USP40-208ENST00000450966 TAOK3Q9H2K8 898 aa15.16■□□□□ 0.02
USP40-208ENST00000450966 ODF2LQ9ULJ1 636 aa15.16■□□□□ 0.02
USP40-208ENST00000450966 PPP1R12BO60237 982 aaPredicted RBP15.15■□□□□ 0.02
USP40-208ENST00000450966 MAP3K9P80192 1104 aa15.15■□□□□ 0.02
USP40-208ENST00000450966 TAF7Q15545 349 aaPredicted RBP15.15■□□□□ 0.02
USP40-208ENST00000450966 TBC1D31Q96DN5 1066 aa15.15■□□□□ 0.02
USP40-208ENST00000450966 GEMIN8Q9NWZ8 242 aaKnown RBP15.15■□□□□ 0.02
USP40-208ENST00000450966 CCDC69A6NI79 296 aa15.15■□□□□ 0.02
USP40-208ENST00000450966 ATP8B1O43520 1251 aa15.15■□□□□ 0.02
USP40-208ENST00000450966 GIMAP6Q6P9H5 292 aa15.15■□□□□ 0.02
USP40-208ENST00000450966 SKAP1Q86WV1 359 aa15.15■□□□□ 0.02
USP40-208ENST00000450966 SH3GL3Q99963 347 aa15.15■□□□□ 0.02
USP40-208ENST00000450966 TRIM7Q9C029 511 aa15.15■□□□□ 0.02
USP40-208ENST00000450966 RAD50Q92878 1312 aa15.15■□□□□ 0.02
USP40-208ENST00000450966 TRIM22Q8IYM9 498 aa15.15■□□□□ 0.02
USP40-208ENST00000450966 IRX1P78414 480 aaPredicted RBP15.15■□□□□ 0.02
USP40-208ENST00000450966 ATP2B2Q01814 1243 aa15.15■□□□□ 0.02
USP40-208ENST00000450966 UBE4AQ14139 1066 aa15.14■□□□□ 0.01
USP40-208ENST00000450966 KIF21AQ7Z4S6 1674 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 77.5 ms