RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 E9PSI1 815 aa15.65■□□□□ 0.1
PTPRF-208ENST00000437607 PPIP5K2O43314 1243 aa15.65■□□□□ 0.1
PTPRF-208ENST00000437607 LMOD1P29536 600 aaPredicted RBP15.65■□□□□ 0.1
PTPRF-208ENST00000437607 NIM1KQ8IY84 436 aa15.65■□□□□ 0.1
PTPRF-208ENST00000437607 BABAM1Q9NWV8 329 aa15.65■□□□□ 0.1
PTPRF-208ENST00000437607 CASP8AP2Q9UKL3 1982 aa15.65■□□□□ 0.1
PTPRF-208ENST00000437607 IL16Q14005 1332 aa15.65■□□□□ 0.1
PTPRF-208ENST00000437607 LBX1P52954 281 aa15.64■□□□□ 0.09
PTPRF-208ENST00000437607 KRT24Q2M2I5 525 aa15.64■□□□□ 0.09
PTPRF-208ENST00000437607 CST9Q5W186 159 aa15.64■□□□□ 0.09
PTPRF-208ENST00000437607 USP50Q70EL3 339 aaPredicted RBP15.64■□□□□ 0.09
PTPRF-208ENST00000437607 COPS6Q7L5N1 327 aa15.64■□□□□ 0.09
PTPRF-208ENST00000437607 NLRP10Q86W26 655 aa15.64■□□□□ 0.09
PTPRF-208ENST00000437607 NECTIN2Q92692 538 aa15.64■□□□□ 0.09
PTPRF-208ENST00000437607 AIDAQ96BJ3 306 aa15.64■□□□□ 0.09
PTPRF-208ENST00000437607 RTFDC1Q9BY42 306 aaPredicted RBP15.64■□□□□ 0.09
PTPRF-208ENST00000437607 ABT1Q9ULW3 272 aaKnown RBP15.64■□□□□ 0.09
PTPRF-208ENST00000437607 SCN9AQ15858 1988 aa15.64■□□□□ 0.09
PTPRF-208ENST00000437607 TRAF5O00463 557 aa15.63■□□□□ 0.09
PTPRF-208ENST00000437607 HSPA8P11142 646 aaKnown RBP15.63■□□□□ 0.09
PTPRF-208ENST00000437607 HCLS1P14317 486 aaPredicted RBP15.63■□□□□ 0.09
PTPRF-208ENST00000437607 CXCL9Q07325 125 aa15.63■□□□□ 0.09
PTPRF-208ENST00000437607 XAGE3Q8WTP9 111 aa15.63■□□□□ 0.09
PTPRF-208ENST00000437607 VPS33BQ9H267 617 aa15.63■□□□□ 0.09
PTPRF-208ENST00000437607 MYH16Q9H6N6 1097 aa15.63■□□□□ 0.09
PTPRF-208ENST00000437607 GPRC5DQ9NZD1 345 aa15.63■□□□□ 0.09
PTPRF-208ENST00000437607 PSME4Q14997 1843 aa15.63■□□□□ 0.09
PTPRF-208ENST00000437607 AIMP1Q12904 312 aaKnown RBP15.62■□□□□ 0.09
PTPRF-208ENST00000437607 SP8Q8IXZ3 490 aa15.62■□□□□ 0.09
PTPRF-208ENST00000437607 BBOX1O75936 387 aa15.61■□□□□ 0.09
PTPRF-208ENST00000437607 TCIRG1Q13488 830 aa15.61■□□□□ 0.09
PTPRF-208ENST00000437607 CDCA7LQ96GN5 454 aa15.61■□□□□ 0.09
PTPRF-208ENST00000437607 ADARB2Q9NS39 739 aaKnown RBP15.61■□□□□ 0.09
PTPRF-208ENST00000437607 ZNRF3Q9ULT6 936 aa15.61■□□□□ 0.09
PTPRF-208ENST00000437607 GMPSP49915 693 aaPredicted RBP15.6■□□□□ 0.09
PTPRF-208ENST00000437607 SLFN5Q08AF3 891 aa15.6■□□□□ 0.09
PTPRF-208ENST00000437607 HSP90AB3PQ58FF7 597 aa15.6■□□□□ 0.09
PTPRF-208ENST00000437607 CYP4F22Q6NT55 531 aa15.6■□□□□ 0.09
PTPRF-208ENST00000437607 DPP8Q6V1X1 898 aaPredicted RBP15.6■□□□□ 0.09
PTPRF-208ENST00000437607 SUPT20HQ8NEM7 779 aa15.6■□□□□ 0.09
PTPRF-208ENST00000437607 ZNF428Q96B54 188 aa15.6■□□□□ 0.09
PTPRF-208ENST00000437607 CAPNS2Q96L46 248 aa15.6■□□□□ 0.09
PTPRF-208ENST00000437607 IFT57Q9NWB7 429 aa15.6■□□□□ 0.09
PTPRF-208ENST00000437607 SPEF2Q9C093 1822 aa15.59■□□□□ 0.09
PTPRF-208ENST00000437607 MYH3P11055 1940 aa15.59■□□□□ 0.09
PTPRF-208ENST00000437607 YDJCA8MPS7 323 aa15.59■□□□□ 0.09
PTPRF-208ENST00000437607 CHL1O00533 1208 aa15.59■□□□□ 0.09
PTPRF-208ENST00000437607 GNAI1P63096 354 aa15.59■□□□□ 0.09
PTPRF-208ENST00000437607 MAP2K1Q02750 393 aaPredicted RBP15.59■□□□□ 0.09
PTPRF-208ENST00000437607 KIAA2012Q0VF49 1180 aa15.59■□□□□ 0.09
PTPRF-208ENST00000437607 GRAPQ13588 217 aa15.59■□□□□ 0.09
PTPRF-208ENST00000437607 MPNDQ8N594 471 aa15.59■□□□□ 0.09
PTPRF-208ENST00000437607 GRAPLQ8TC17 118 aaPredicted RBP15.59■□□□□ 0.09
PTPRF-208ENST00000437607 CHPF2Q9P2E5 772 aa15.59■□□□□ 0.09
PTPRF-208ENST00000437607 TRMT112Q9UI30 125 aaKnown RBP15.59■□□□□ 0.09
PTPRF-208ENST00000437607 LAS1LQ9Y4W2 734 aaKnown RBP15.59■□□□□ 0.09
PTPRF-208ENST00000437607 TLL2Q9Y6L7 1015 aa15.59■□□□□ 0.09
PTPRF-208ENST00000437607 SH3TC1Q8TE82 1336 aa15.59■□□□□ 0.09
PTPRF-208ENST00000437607 FANCIQ9NVI1 1328 aa15.59■□□□□ 0.09
PTPRF-208ENST00000437607 HIRAP54198 1017 aaPredicted RBP15.58■□□□□ 0.08
PTPRF-208ENST00000437607 DDX46Q7L014 1031 aaKnown RBP15.58■□□□□ 0.08
PTPRF-208ENST00000437607 TMX4Q9H1E5 349 aaPredicted RBP15.58■□□□□ 0.08
PTPRF-208ENST00000437607 PGAP2Q9UHJ9 254 aa15.58■□□□□ 0.08
PTPRF-208ENST00000437607 AKAP11Q9UKA4 1901 aa15.57■□□□□ 0.08
PTPRF-208ENST00000437607 SHTN1A0MZ66 631 aa15.57■□□□□ 0.08
PTPRF-208ENST00000437607 RAD17O75943 681 aa15.57■□□□□ 0.08
PTPRF-208ENST00000437607 DUSP27Q5VZP5 1158 aa15.57■□□□□ 0.08
PTPRF-208ENST00000437607 CIAPIN1Q6FI81 312 aa15.57■□□□□ 0.08
PTPRF-208ENST00000437607 GLIS2Q9BZE0 524 aaPredicted RBP15.57■□□□□ 0.08
PTPRF-208ENST00000437607 SPINK5Q9NQ38 1064 aaPredicted RBP15.57■□□□□ 0.08
PTPRF-208ENST00000437607 ZNF646O15015 1829 aaPredicted RBP15.57■□□□□ 0.08
PTPRF-208ENST00000437607 TNRC18O15417 2968 aaPredicted RBP15.56■□□□□ 0.08
PTPRF-208ENST00000437607 AOC2O75106 756 aa15.56■□□□□ 0.08
PTPRF-208ENST00000437607 GRM1Q13255 1194 aa15.56■□□□□ 0.08
PTPRF-208ENST00000437607 PAXIP1Q6ZW49 1069 aaPredicted RBP15.56■□□□□ 0.08
PTPRF-208ENST00000437607 SAPCD2Q86UD0 394 aa15.56■□□□□ 0.08
PTPRF-208ENST00000437607 TRPM4Q8TD43 1214 aa15.56■□□□□ 0.08
PTPRF-208ENST00000437607 CFAP44Q96MT7 982 aa15.56■□□□□ 0.08
PTPRF-208ENST00000437607 GPR101Q96P66 508 aaPredicted RBP15.56■□□□□ 0.08
PTPRF-208ENST00000437607 ISCA1Q9BUE6 129 aa15.56■□□□□ 0.08
PTPRF-208ENST00000437607 CDHR2Q9BYE9 1310 aa15.56■□□□□ 0.08
PTPRF-208ENST00000437607 ECE1P42892 770 aa15.55■□□□□ 0.08
PTPRF-208ENST00000437607 CELF1Q92879 486 aaKnown RBP15.55■□□□□ 0.08
PTPRF-208ENST00000437607 TSR2Q969E8 191 aaKnown RBP15.55■□□□□ 0.08
PTPRF-208ENST00000437607 ABHD8Q96I13 439 aa15.55■□□□□ 0.08
PTPRF-208ENST00000437607 CELF2O95319 508 aaKnown RBP15.54■□□□□ 0.08
PTPRF-208ENST00000437607 HDGFL1Q5TGJ6 251 aa15.54■□□□□ 0.08
PTPRF-208ENST00000437607 PLBD2Q8NHP8 589 aa15.54■□□□□ 0.08
PTPRF-208ENST00000437607 FAM89AQ96GI7 184 aa15.54■□□□□ 0.08
PTPRF-208ENST00000437607 BCL2L13Q9BXK5 485 aa15.54■□□□□ 0.08
PTPRF-208ENST00000437607 MBIPQ9NS73 344 aa15.54■□□□□ 0.08
PTPRF-208ENST00000437607 ATP5J2-PTCD1G3V325 749 aa15.53■□□□□ 0.08
PTPRF-208ENST00000437607 ZNF853P0CG23 659 aa15.53■□□□□ 0.08
PTPRF-208ENST00000437607 TNIP1Q15025 636 aa15.53■□□□□ 0.08
PTPRF-208ENST00000437607 SF3B3Q15393 1217 aaKnown RBP15.53■□□□□ 0.08
PTPRF-208ENST00000437607 ANKRD13DQ6ZTN6 518 aa15.53■□□□□ 0.08
PTPRF-208ENST00000437607 TMC4Q7Z404 712 aa15.53■□□□□ 0.08
PTPRF-208ENST00000437607 TRMT2AQ8IZ69 625 aaKnown RBP15.53■□□□□ 0.08
PTPRF-208ENST00000437607 ZC3H15Q8WU90 426 aaKnown RBP15.53■□□□□ 0.08
PTPRF-208ENST00000437607 CNOT7Q9UIV1 285 aaKnown RBP15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms