RNA–Protein interactions for RNA: ENST00000425056.5

GPC1-203, Transcript of glypican 1, humanhuman

TSL 5

Gene GPC1, Length 1,085 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-203ENST00000425056 TMC4Q7Z404 712 aa23.01■■□□□ 1.27
GPC1-203ENST00000425056 MKRN1Q9UHC7 482 aaKnown RBP23.01■■□□□ 1.27
GPC1-203ENST00000425056 TMEM88BA6NKF7 163 aa23■■□□□ 1.27
GPC1-203ENST00000425056 ATP5J2-PTCD1G3V325 749 aa23■■□□□ 1.27
GPC1-203ENST00000425056 TRIM28Q13263 835 aaKnown RBP23■■□□□ 1.27
GPC1-203ENST00000425056 COL13A1Q5TAT6 717 aaPredicted RBP23■■□□□ 1.27
GPC1-203ENST00000425056 MAP1SQ66K74 1059 aaPredicted RBP23■■□□□ 1.27
GPC1-203ENST00000425056 MPNDQ8N594 471 aa23■■□□□ 1.27
GPC1-203ENST00000425056 ZNF428Q96B54 188 aa23■■□□□ 1.27
GPC1-203ENST00000425056 EPS15P42566 896 aa22.99■■□□□ 1.27
GPC1-203ENST00000425056 KIAA2012Q0VF49 1180 aa22.99■■□□□ 1.27
GPC1-203ENST00000425056 CNTROBQ8N137 903 aa22.99■■□□□ 1.27
GPC1-203ENST00000425056 FAM89AQ96GI7 184 aa22.99■■□□□ 1.27
GPC1-203ENST00000425056 ZNRF3Q9ULT6 936 aa22.99■■□□□ 1.27
GPC1-203ENST00000425056 COL4A1P02462 1669 aa22.98■■□□□ 1.27
GPC1-203ENST00000425056 SF3B3Q15393 1217 aaKnown RBP22.98■■□□□ 1.27
GPC1-203ENST00000425056 GOLGA2Q08379 1002 aa22.97■■□□□ 1.27
GPC1-203ENST00000425056 CXCL9Q07325 125 aa22.96■■□□□ 1.27
GPC1-203ENST00000425056 USP50Q70EL3 339 aaPredicted RBP22.96■■□□□ 1.27
GPC1-203ENST00000425056 PHAXQ9H814 394 aaKnown RBP22.96■■□□□ 1.27
GPC1-203ENST00000425056 GPRC5DQ9NZD1 345 aa22.96■■□□□ 1.27
GPC1-203ENST00000425056 ELL2O00472 640 aaPredicted RBP22.95■■□□□ 1.26
GPC1-203ENST00000425056 RIC3Q7Z5B4 369 aa22.95■■□□□ 1.26
GPC1-203ENST00000425056 C8orf58Q8NAV2 365 aa22.95■■□□□ 1.26
GPC1-203ENST00000425056 TRPM7Q96QT4 1865 aa22.94■■□□□ 1.26
GPC1-203ENST00000425056 CDHR2Q9BYE9 1310 aa22.94■■□□□ 1.26
GPC1-203ENST00000425056 IRS4O14654 1257 aaPredicted RBP22.94■■□□□ 1.26
GPC1-203ENST00000425056 CELF1Q92879 486 aaKnown RBP22.94■■□□□ 1.26
GPC1-203ENST00000425056 RTL5Q5HYW3 569 aaPredicted RBP22.93■■□□□ 1.26
GPC1-203ENST00000425056 CIAPIN1Q6FI81 312 aa22.93■■□□□ 1.26
GPC1-203ENST00000425056 ZBTB38Q8NAP3 1195 aaPredicted RBP22.93■■□□□ 1.26
GPC1-203ENST00000425056 ADARB2Q9NS39 739 aaKnown RBP22.93■■□□□ 1.26
GPC1-203ENST00000425056 RASSF10A6NK89 507 aa22.92■■□□□ 1.26
GPC1-203ENST00000425056 CCDC184Q52MB2 194 aa22.92■■□□□ 1.26
GPC1-203ENST00000425056 CHMP4AQ9BY43 222 aa22.92■■□□□ 1.26
GPC1-203ENST00000425056 VEGFBP49765 207 aa22.91■■□□□ 1.26
GPC1-203ENST00000425056 GMPSP49915 693 aaPredicted RBP22.91■■□□□ 1.26
GPC1-203ENST00000425056 CCDC30Q5VVM6 783 aa22.91■■□□□ 1.26
GPC1-203ENST00000425056 MYD88Q99836 296 aa22.91■■□□□ 1.26
GPC1-203ENST00000425056 YDJCA8MPS7 323 aa22.9■■□□□ 1.26
GPC1-203ENST00000425056 TNIP1Q15025 636 aa22.9■■□□□ 1.26
GPC1-203ENST00000425056 CCDC27Q2M243 656 aa22.9■■□□□ 1.26
GPC1-203ENST00000425056 CCDC191Q8NCU4 936 aa22.9■■□□□ 1.26
GPC1-203ENST00000425056 THSD7BQ9C0I4 1608 aa22.9■■□□□ 1.26
GPC1-203ENST00000425056 RAD17O75943 681 aa22.89■■□□□ 1.25
GPC1-203ENST00000425056 HSP90B1P14625 803 aaKnown RBP22.89■■□□□ 1.25
GPC1-203ENST00000425056 TSPYL6Q8N831 410 aa22.89■■□□□ 1.25
GPC1-203ENST00000425056 DDX58O95786 925 aaKnown RBP22.88■■□□□ 1.25
GPC1-203ENST00000425056 PCCAP05165 728 aaPredicted RBP22.88■■□□□ 1.25
GPC1-203ENST00000425056 TNS4Q8IZW8 715 aa22.88■■□□□ 1.25
GPC1-203ENST00000425056 METTL22Q9BUU2 404 aaPredicted RBP22.88■■□□□ 1.25
GPC1-203ENST00000425056 NSFL1CQ9UNZ2 370 aaKnown RBP22.88■■□□□ 1.25
GPC1-203ENST00000425056 RPS8P62241 208 aaKnown RBP22.87■■□□□ 1.25
GPC1-203ENST00000425056 GPSM2P81274 684 aa22.87■■□□□ 1.25
GPC1-203ENST00000425056 WASHC4Q2M389 1173 aa22.87■■□□□ 1.25
GPC1-203ENST00000425056 DEFB115Q30KQ5 88 aa22.87■■□□□ 1.25
GPC1-203ENST00000425056 TSR2Q969E8 191 aaKnown RBP22.87■■□□□ 1.25
GPC1-203ENST00000425056 CWC25Q9NXE8 425 aaPredicted RBP22.87■■□□□ 1.25
GPC1-203ENST00000425056 FMR1Q06787 632 aaKnown RBP eCLIP22.86■■□□□ 1.25
GPC1-203ENST00000425056 BCL2L13Q9BXK5 485 aa22.86■■□□□ 1.25
GPC1-203ENST00000425056 POLLQ9UGP5 575 aa22.86■■□□□ 1.25
GPC1-203ENST00000425056 ABT1Q9ULW3 272 aaKnown RBP22.86■■□□□ 1.25
GPC1-203ENST00000425056 MYH3P11055 1940 aa22.85■■□□□ 1.25
GPC1-203ENST00000425056 TRAF5O00463 557 aa22.85■■□□□ 1.25
GPC1-203ENST00000425056 FOXN1O15353 648 aa22.85■■□□□ 1.25
GPC1-203ENST00000425056 WWC1Q8IX03 1113 aa22.85■■□□□ 1.25
GPC1-203ENST00000425056 PGAP2Q9UHJ9 254 aa22.85■■□□□ 1.25
GPC1-203ENST00000425056 C6orf229H3BNL8 230 aa22.84■■□□□ 1.25
GPC1-203ENST00000425056 PDE8AO60658 829 aa22.84■■□□□ 1.25
GPC1-203ENST00000425056 CCDC152Q4G0S7 254 aa22.84■■□□□ 1.25
GPC1-203ENST00000425056 NCBP3Q53F19 620 aaKnown RBP22.84■■□□□ 1.25
GPC1-203ENST00000425056 EYA3Q99504 573 aa22.84■■□□□ 1.25
GPC1-203ENST00000425056 DBNDD1Q9H9R9 158 aa22.84■■□□□ 1.25
GPC1-203ENST00000425056 SEC31BQ9NQW1 1179 aa22.84■■□□□ 1.25
GPC1-203ENST00000425056 PODXL2Q9NZ53 605 aa22.84■■□□□ 1.25
GPC1-203ENST00000425056 MAP3K2Q9Y2U5 619 aa22.84■■□□□ 1.25
GPC1-203ENST00000425056 IL16Q14005 1332 aa22.83■■□□□ 1.25
GPC1-203ENST00000425056 SCN9AQ15858 1988 aa22.83■■□□□ 1.25
GPC1-203ENST00000425056 CST9Q5W186 159 aa22.83■■□□□ 1.25
GPC1-203ENST00000425056 KSR2Q6VAB6 950 aa22.83■■□□□ 1.25
GPC1-203ENST00000425056 TBC1D16Q8TBP0 767 aa22.83■■□□□ 1.25
GPC1-203ENST00000425056 TRPM4Q8TD43 1214 aa22.83■■□□□ 1.25
GPC1-203ENST00000425056 ZC3H15Q8WU90 426 aaKnown RBP22.83■■□□□ 1.25
GPC1-203ENST00000425056 WDR33Q9C0J8 1336 aaKnown RBP22.82■■□□□ 1.24
GPC1-203ENST00000425056 PSMD14O00487 310 aa22.82■■□□□ 1.24
GPC1-203ENST00000425056 HIRAP54198 1017 aaPredicted RBP22.82■■□□□ 1.24
GPC1-203ENST00000425056 DPF2Q92785 391 aa22.82■■□□□ 1.24
GPC1-203ENST00000425056 STK31Q9BXU1 1019 aa22.82■■□□□ 1.24
GPC1-203ENST00000425056 WBP1LQ9NX94 342 aa22.82■■□□□ 1.24
GPC1-203ENST00000425056 CNOT7Q9UIV1 285 aaKnown RBP22.82■■□□□ 1.24
GPC1-203ENST00000425056 RTL9Q8NET4 1388 aa22.81■■□□□ 1.24
GPC1-203ENST00000425056 PSME4Q14997 1843 aa22.81■■□□□ 1.24
GPC1-203ENST00000425056 SHTN1A0MZ66 631 aa22.81■■□□□ 1.24
GPC1-203ENST00000425056 PI4KAP2A4QPH2 592 aa22.81■■□□□ 1.24
GPC1-203ENST00000425056 RIMBP2O15034 1052 aa22.81■■□□□ 1.24
GPC1-203ENST00000425056 ECE2O60344 883 aa22.81■■□□□ 1.24
GPC1-203ENST00000425056 ZEB1P37275 1124 aaPredicted RBP22.81■■□□□ 1.24
GPC1-203ENST00000425056 TWISTNBQ3B726 338 aaPredicted RBP22.81■■□□□ 1.24
GPC1-203ENST00000425056 MICALL2Q8IY33 904 aa22.81■■□□□ 1.24
GPC1-203ENST00000425056 PI4KAP1Q8N8J0 262 aa22.81■■□□□ 1.24
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms