RNA–Protein interactions for RNA: ENST00000415083.6

SS18-203, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SS18, Length 3,414 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-203ENST00000415083 SASS6Q6UVJ0 657 aa11.78□□□□□ -0.52
SS18-203ENST00000415083 FAM184AQ8NB25 1140 aa11.78□□□□□ -0.52
SS18-203ENST00000415083 ZNF496Q96IT1 587 aaPredicted RBP11.78□□□□□ -0.52
SS18-203ENST00000415083 ZSCAN31Q96LW9 406 aaPredicted RBP11.78□□□□□ -0.52
SS18-203ENST00000415083 MST1RQ04912 1400 aa11.78□□□□□ -0.52
SS18-203ENST00000415083 DDX60Q8IY21 1712 aaKnown RBP11.78□□□□□ -0.52
SS18-203ENST00000415083 PHF14O94880 888 aa11.77□□□□□ -0.52
SS18-203ENST00000415083 ADD1P35611 737 aaKnown RBP11.77□□□□□ -0.52
SS18-203ENST00000415083 KIAA2012Q0VF49 1180 aa11.77□□□□□ -0.52
SS18-203ENST00000415083 CAMK4Q16566 473 aa11.77□□□□□ -0.52
SS18-203ENST00000415083 COPS6Q7L5N1 327 aa11.77□□□□□ -0.52
SS18-203ENST00000415083 ERC1Q8IUD2 1116 aa11.77□□□□□ -0.52
SS18-203ENST00000415083 NFATC2IPQ8NCF5 419 aa11.77□□□□□ -0.52
SS18-203ENST00000415083 RUFY2Q8WXA3 655 aa11.77□□□□□ -0.52
SS18-203ENST00000415083 DDX17Q92841 729 aaKnown RBP11.77□□□□□ -0.52
SS18-203ENST00000415083 TFIP11Q9UBB9 837 aaKnown RBP11.77□□□□□ -0.52
SS18-203ENST00000415083 LAMB4A4D0S4 1761 aa11.77□□□□□ -0.53
SS18-203ENST00000415083 STRCP1A6NGW2 1772 aa11.77□□□□□ -0.53
SS18-203ENST00000415083 TFCP2Q12800 502 aa11.77□□□□□ -0.53
SS18-203ENST00000415083 C1orf141Q5JVX7 400 aa11.77□□□□□ -0.53
SS18-203ENST00000415083 RBM43Q6ZSC3 357 aaKnown RBP11.77□□□□□ -0.53
SS18-203ENST00000415083 STK3Q13188 491 aa11.77□□□□□ -0.53
SS18-203ENST00000415083 LARP1BQ659C4 914 aaKnown RBP11.77□□□□□ -0.53
SS18-203ENST00000415083 MYD88Q99836 296 aa11.77□□□□□ -0.53
SS18-203ENST00000415083 SLC52A2Q9HAB3 445 aa11.77□□□□□ -0.53
SS18-203ENST00000415083 CHMP3Q9Y3E7 222 aa11.77□□□□□ -0.53
SS18-203ENST00000415083 KIAA1524Q8TCG1 905 aa11.76□□□□□ -0.53
SS18-203ENST00000415083 DDX11Q96FC9 970 aa11.76□□□□□ -0.53
SS18-203ENST00000415083 ELP1O95163 1332 aa11.76□□□□□ -0.53
SS18-203ENST00000415083 NPHP3Q7Z494 1330 aa11.76□□□□□ -0.53
SS18-203ENST00000415083 CTDNEP1O95476 244 aa11.76□□□□□ -0.53
SS18-203ENST00000415083 CYP21A2P08686 494 aa11.76□□□□□ -0.53
SS18-203ENST00000415083 LUZP1Q86V48 1076 aa11.76□□□□□ -0.53
SS18-203ENST00000415083 MYRIPQ8NFW9 859 aa11.76□□□□□ -0.53
SS18-203ENST00000415083 METTL22Q9BUU2 404 aaPredicted RBP11.76□□□□□ -0.53
SS18-203ENST00000415083 NR1I2O75469 434 aa11.76□□□□□ -0.53
SS18-203ENST00000415083 PHKG2P15735 406 aa11.76□□□□□ -0.53
SS18-203ENST00000415083 RESTQ13127 1097 aa11.76□□□□□ -0.53
SS18-203ENST00000415083 CSPP1Q1MSJ5 1256 aa11.76□□□□□ -0.53
SS18-203ENST00000415083 RABL6Q3YEC7 729 aaPredicted RBP11.76□□□□□ -0.53
SS18-203ENST00000415083 FSD1Q9BTV5 496 aa11.76□□□□□ -0.53
SS18-203ENST00000415083 G3BP1Q13283 466 aaKnown RBP eCLIP11.75□□□□□ -0.53
SS18-203ENST00000415083 TNNI3KQ59H18 835 aa11.75□□□□□ -0.53
SS18-203ENST00000415083 LEO1Q8WVC0 666 aaPredicted RBP11.75□□□□□ -0.53
SS18-203ENST00000415083 DBNDD2Q9BQY9 259 aa11.75□□□□□ -0.53
SS18-203ENST00000415083 FTOQ9C0B1 505 aaKnown RBP eCLIP11.75□□□□□ -0.53
SS18-203ENST00000415083 COPRSQ9NQ92 184 aa11.75□□□□□ -0.53
SS18-203ENST00000415083 NRBP1Q9UHY1 535 aa11.75□□□□□ -0.53
SS18-203ENST00000415083 FPGT-TNNI3KV9GXZ4 949 aa11.75□□□□□ -0.53
SS18-203ENST00000415083 UBR2Q8IWV8 1755 aa11.75□□□□□ -0.53
SS18-203ENST00000415083 DYNC1I1O14576 645 aa11.75□□□□□ -0.53
SS18-203ENST00000415083 CYP27B1O15528 508 aa11.75□□□□□ -0.53
SS18-203ENST00000415083 ZC3H6P61129 1189 aaKnown RBP11.75□□□□□ -0.53
SS18-203ENST00000415083 CKAP2LQ8IYA6 745 aa11.75□□□□□ -0.53
SS18-203ENST00000415083 LRRC2Q9BYS8 371 aa11.75□□□□□ -0.53
SS18-203ENST00000415083 PALLDQ8WX93 1383 aa11.75□□□□□ -0.53
SS18-203ENST00000415083 KIF1AQ12756 1690 aa11.75□□□□□ -0.53
SS18-203ENST00000415083 C1orf167Q5SNV9 1468 aa11.75□□□□□ -0.53
SS18-203ENST00000415083 LETM1O95202 739 aaPredicted RBP11.74□□□□□ -0.53
SS18-203ENST00000415083 PTMAP06454 111 aaKnown RBP11.74□□□□□ -0.53
SS18-203ENST00000415083 DACT1Q9NYF0 836 aa11.74□□□□□ -0.53
SS18-203ENST00000415083 ATP5JP18859 108 aa11.74□□□□□ -0.53
SS18-203ENST00000415083 GTF2F1P35269 517 aaKnown RBP eCLIP11.74□□□□□ -0.53
SS18-203ENST00000415083 TYRO3Q06418 890 aa11.74□□□□□ -0.53
SS18-203ENST00000415083 ANKLE2Q86XL3 938 aa11.74□□□□□ -0.53
SS18-203ENST00000415083 GTF3C6Q969F1 213 aa11.74□□□□□ -0.53
SS18-203ENST00000415083 A0A087WWV3 80 aa11.74□□□□□ -0.53
SS18-203ENST00000415083 SCRN1Q12765 414 aa11.74□□□□□ -0.53
SS18-203ENST00000415083 BLOC1S2Q6QNY1 142 aa11.74□□□□□ -0.53
SS18-203ENST00000415083 RIC3Q7Z5B4 369 aa11.74□□□□□ -0.53
SS18-203ENST00000415083 ILDR1Q86SU0 546 aaPredicted RBP11.74□□□□□ -0.53
SS18-203ENST00000415083 SPC24Q8NBT2 197 aa11.74□□□□□ -0.53
SS18-203ENST00000415083 ATP5J2-PTCD1G3V325 749 aa11.73□□□□□ -0.53
SS18-203ENST00000415083 FOXP2O15409 715 aa11.73□□□□□ -0.53
SS18-203ENST00000415083 PTCD1O75127 700 aaKnown RBP11.73□□□□□ -0.53
SS18-203ENST00000415083 FOXO4P98177 505 aa11.73□□□□□ -0.53
SS18-203ENST00000415083 ATG9AQ7Z3C6 839 aa11.73□□□□□ -0.53
SS18-203ENST00000415083 CBX8Q9HC52 389 aa11.73□□□□□ -0.53
SS18-203ENST00000415083 ZKSCAN1P17029 563 aaPredicted RBP11.73□□□□□ -0.53
SS18-203ENST00000415083 KRT28Q7Z3Y7 464 aa11.73□□□□□ -0.53
SS18-203ENST00000415083 GPATCH3Q96I76 525 aa11.73□□□□□ -0.53
SS18-203ENST00000415083 SHANK3Q9BYB0 1731 aa11.73□□□□□ -0.53
SS18-203ENST00000415083 NBPF26B4DH59 902 aa11.73□□□□□ -0.53
SS18-203ENST00000415083 LRMPQ12912 555 aa11.73□□□□□ -0.53
SS18-203ENST00000415083 NBPF14Q5TI25 921 aa11.73□□□□□ -0.53
SS18-203ENST00000415083 NBPF10Q6P3W6 841 aaKnown RBP11.73□□□□□ -0.53
SS18-203ENST00000415083 NBPF15Q8N660 670 aa11.73□□□□□ -0.53
SS18-203ENST00000415083 PTGS1P23219 599 aa11.72□□□□□ -0.53
SS18-203ENST00000415083 Q6ZUG5 572 aa11.72□□□□□ -0.53
SS18-203ENST00000415083 NKX2-3Q8TAU0 364 aa11.72□□□□□ -0.53
SS18-203ENST00000415083 GOLPH3LQ9H4A5 285 aa11.72□□□□□ -0.53
SS18-203ENST00000415083 ANO6Q4KMQ2 910 aa11.72□□□□□ -0.53
SS18-203ENST00000415083 DDX46Q7L014 1031 aaKnown RBP11.72□□□□□ -0.53
SS18-203ENST00000415083 UBE3BQ7Z3V4 1068 aa11.72□□□□□ -0.53
SS18-203ENST00000415083 PLA2G4DQ86XP0 818 aa11.72□□□□□ -0.53
SS18-203ENST00000415083 SMARCC2Q8TAQ2 1214 aa11.72□□□□□ -0.53
SS18-203ENST00000415083 ATP6V1DQ9Y5K8 247 aa11.72□□□□□ -0.53
SS18-203ENST00000415083 PARP4Q9UKK3 1724 aaKnown RBP11.72□□□□□ -0.53
SS18-203ENST00000415083 PAPPAQ13219 1627 aa11.72□□□□□ -0.53
SS18-203ENST00000415083 PPFIA3O75145 1194 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 105.1 ms