RNA–Protein interactions for RNA: ENST00000393773.7

CHMP3-202, Transcript of charged multivesicular body protein 3, humanhuman

TSL 3

Gene CHMP3, Length 727 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP3-202ENST00000393773 SP8Q8IXZ3 490 aa20.2■□□□□ 0.82
CHMP3-202ENST00000393773 XAGE3Q8WTP9 111 aa20.2■□□□□ 0.82
CHMP3-202ENST00000393773 GPR101Q96P66 508 aaPredicted RBP20.2■□□□□ 0.82
CHMP3-202ENST00000393773 TMX4Q9H1E5 349 aaPredicted RBP20.2■□□□□ 0.82
CHMP3-202ENST00000393773 BBOX1O75936 387 aa20.19■□□□□ 0.82
CHMP3-202ENST00000393773 GRM1Q13255 1194 aa20.19■□□□□ 0.82
CHMP3-202ENST00000393773 GRAPQ13588 217 aa20.19■□□□□ 0.82
CHMP3-202ENST00000393773 HSP90AB3PQ58FF7 597 aa20.19■□□□□ 0.82
CHMP3-202ENST00000393773 CIAPIN1Q6FI81 312 aa20.19■□□□□ 0.82
CHMP3-202ENST00000393773 COPS6Q7L5N1 327 aa20.19■□□□□ 0.82
CHMP3-202ENST00000393773 SAPCD2Q86UD0 394 aa20.19■□□□□ 0.82
CHMP3-202ENST00000393773 GRAPLQ8TC17 118 aaPredicted RBP20.19■□□□□ 0.82
CHMP3-202ENST00000393773 GLIS2Q9BZE0 524 aaPredicted RBP20.19■□□□□ 0.82
CHMP3-202ENST00000393773 PGAP2Q9UHJ9 254 aa20.19■□□□□ 0.82
CHMP3-202ENST00000393773 SH3TC1Q8TE82 1336 aa20.19■□□□□ 0.82
CHMP3-202ENST00000393773 YDJCA8MPS7 323 aa20.18■□□□□ 0.82
CHMP3-202ENST00000393773 AOC2O75106 756 aa20.18■□□□□ 0.82
CHMP3-202ENST00000393773 CELF2O95319 508 aaKnown RBP20.18■□□□□ 0.82
CHMP3-202ENST00000393773 TMPOP42166 694 aaKnown RBP20.18■□□□□ 0.82
CHMP3-202ENST00000393773 MPNDQ8N594 471 aa20.18■□□□□ 0.82
CHMP3-202ENST00000393773 TRPM4Q8TD43 1214 aa20.18■□□□□ 0.82
CHMP3-202ENST00000393773 RAD17O75943 681 aa20.17■□□□□ 0.82
CHMP3-202ENST00000393773 HIRAP54198 1017 aaPredicted RBP20.17■□□□□ 0.82
CHMP3-202ENST00000393773 AIMP1Q12904 312 aaKnown RBP20.17■□□□□ 0.82
CHMP3-202ENST00000393773 TCIRG1Q13488 830 aa20.17■□□□□ 0.82
CHMP3-202ENST00000393773 NECTIN2Q92692 538 aa20.17■□□□□ 0.82
CHMP3-202ENST00000393773 HHIPL1Q96JK4 782 aa20.17■□□□□ 0.82
CHMP3-202ENST00000393773 TNRC18O15417 2968 aaPredicted RBP20.17■□□□□ 0.82
CHMP3-202ENST00000393773 SHTN1A0MZ66 631 aa20.16■□□□□ 0.82
CHMP3-202ENST00000393773 MAP2K2P36507 400 aa20.16■□□□□ 0.82
CHMP3-202ENST00000393773 LMOD3Q0VAK6 560 aa20.16■□□□□ 0.82
CHMP3-202ENST00000393773 KRT24Q2M2I5 525 aa20.16■□□□□ 0.82
CHMP3-202ENST00000393773 DDX46Q7L014 1031 aaKnown RBP20.16■□□□□ 0.82
CHMP3-202ENST00000393773 BEGAINQ9BUH8 593 aa20.16■□□□□ 0.82
CHMP3-202ENST00000393773 TRMT112Q9UI30 125 aaKnown RBP20.16■□□□□ 0.82
CHMP3-202ENST00000393773 ZC3H15Q8WU90 426 aaKnown RBP20.15■□□□□ 0.82
CHMP3-202ENST00000393773 TSKSQ9UJT2 592 aa20.15■□□□□ 0.82
CHMP3-202ENST00000393773 TNIP1Q15025 636 aa20.14■□□□□ 0.81
CHMP3-202ENST00000393773 TMC4Q7Z404 712 aa20.14■□□□□ 0.81
CHMP3-202ENST00000393773 BCL2L13Q9BXK5 485 aa20.14■□□□□ 0.81
CHMP3-202ENST00000393773 CHPF2Q9P2E5 772 aa20.14■□□□□ 0.81
CHMP3-202ENST00000393773 FAM161AQ3B820 660 aa20.13■□□□□ 0.81
CHMP3-202ENST00000393773 ZNF646O15015 1829 aaPredicted RBP20.13■□□□□ 0.81
CHMP3-202ENST00000393773 CHL1O00533 1208 aa20.12■□□□□ 0.81
CHMP3-202ENST00000393773 BRPF1P55201 1214 aaPredicted RBP20.12■□□□□ 0.81
CHMP3-202ENST00000393773 MICALL2Q8IY33 904 aa20.12■□□□□ 0.81
CHMP3-202ENST00000393773 ZNF428Q96B54 188 aa20.12■□□□□ 0.81
CHMP3-202ENST00000393773 AKAP11Q9UKA4 1901 aa20.12■□□□□ 0.81
CHMP3-202ENST00000393773 SPEF2Q9C093 1822 aa20.11■□□□□ 0.81
CHMP3-202ENST00000393773 CA12O43570 354 aa20.11■□□□□ 0.81
CHMP3-202ENST00000393773 CDC37L1Q7L3B6 337 aa20.11■□□□□ 0.81
CHMP3-202ENST00000393773 ISCA1Q9BUE6 129 aa20.11■□□□□ 0.81
CHMP3-202ENST00000393773 ZNF408Q9H9D4 720 aa20.11■□□□□ 0.81
CHMP3-202ENST00000393773 CNOT7Q9UIV1 285 aaKnown RBP20.11■□□□□ 0.81
CHMP3-202ENST00000393773 RTL9Q8NET4 1388 aa20.1■□□□□ 0.81
CHMP3-202ENST00000393773 MYH3P11055 1940 aa20.1■□□□□ 0.81
CHMP3-202ENST00000393773 RALBP1Q15311 655 aa20.1■□□□□ 0.81
CHMP3-202ENST00000393773 CELF1Q92879 486 aaKnown RBP20.1■□□□□ 0.81
CHMP3-202ENST00000393773 TRIM35Q9UPQ4 493 aa20.1■□□□□ 0.81
CHMP3-202ENST00000393773 PSMD14O00487 310 aa20.09■□□□□ 0.81
CHMP3-202ENST00000393773 EGFRP00533 1210 aa20.09■□□□□ 0.81
CHMP3-202ENST00000393773 HOXB7P09629 217 aa20.09■□□□□ 0.81
CHMP3-202ENST00000393773 SF3B3Q15393 1217 aaKnown RBP20.09■□□□□ 0.81
CHMP3-202ENST00000393773 HDGFL1Q5TGJ6 251 aa20.09■□□□□ 0.81
CHMP3-202ENST00000393773 CCDC146Q8IYE0 955 aa20.09■□□□□ 0.81
CHMP3-202ENST00000393773 PLBD2Q8NHP8 589 aa20.09■□□□□ 0.81
CHMP3-202ENST00000393773 ZBTB12Q9Y330 459 aaPredicted RBP20.09■□□□□ 0.81
CHMP3-202ENST00000393773 DLK2Q6UY11 383 aa20.08■□□□□ 0.81
CHMP3-202ENST00000393773 DPF2Q92785 391 aa20.08■□□□□ 0.81
CHMP3-202ENST00000393773 FAM89AQ96GI7 184 aa20.08■□□□□ 0.81
CHMP3-202ENST00000393773 DBNDD1Q9H9R9 158 aa20.08■□□□□ 0.81
CHMP3-202ENST00000393773 H7C1D1 291 aa20.07■□□□□ 0.8
CHMP3-202ENST00000393773 WASHC4Q2M389 1173 aa20.07■□□□□ 0.8
CHMP3-202ENST00000393773 SAMD7Q7Z3H4 446 aa20.07■□□□□ 0.8
CHMP3-202ENST00000393773 ZIC5Q96T25 663 aa20.07■□□□□ 0.8
CHMP3-202ENST00000393773 POLLQ9UGP5 575 aa20.07■□□□□ 0.8
CHMP3-202ENST00000393773 ZNF609O15014 1411 aa20.07■□□□□ 0.8
CHMP3-202ENST00000393773 CCDC85CA6NKD9 419 aa20.06■□□□□ 0.8
CHMP3-202ENST00000393773 RGS19P49795 217 aa20.06■□□□□ 0.8
CHMP3-202ENST00000393773 GPSM2P81274 684 aa20.06■□□□□ 0.8
CHMP3-202ENST00000393773 NEUROD2Q15784 382 aa20.06■□□□□ 0.8
CHMP3-202ENST00000393773 USP48Q86UV5 1035 aa20.06■□□□□ 0.8
CHMP3-202ENST00000393773 MCOLN1Q9GZU1 580 aa20.06■□□□□ 0.8
CHMP3-202ENST00000393773 DBF4Q9UBU7 674 aaPredicted RBP20.06■□□□□ 0.8
CHMP3-202ENST00000393773 NSFL1CQ9UNZ2 370 aaKnown RBP20.06■□□□□ 0.8
CHMP3-202ENST00000393773 MYBBP1AQ9BQG0 1328 aaKnown RBP20.05■□□□□ 0.8
CHMP3-202ENST00000393773 ATP5J2-PTCD1G3V325 749 aa20.05■□□□□ 0.8
CHMP3-202ENST00000393773 ECE2O60344 883 aa20.05■□□□□ 0.8
CHMP3-202ENST00000393773 HUNKP57058 714 aa20.05■□□□□ 0.8
CHMP3-202ENST00000393773 NOGQ13253 232 aa20.05■□□□□ 0.8
CHMP3-202ENST00000393773 ANKRD13DQ6ZTN6 518 aa20.05■□□□□ 0.8
CHMP3-202ENST00000393773 SLC34A2O95436 690 aa20.04■□□□□ 0.8
CHMP3-202ENST00000393773 RPS12P25398 132 aaKnown RBP20.04■□□□□ 0.8
CHMP3-202ENST00000393773 TBC1D10BQ4KMP7 808 aaPredicted RBP20.04■□□□□ 0.8
CHMP3-202ENST00000393773 RUNDC1Q96C34 613 aa20.04■□□□□ 0.8
CHMP3-202ENST00000393773 LAS1LQ9Y4W2 734 aaKnown RBP20.04■□□□□ 0.8
CHMP3-202ENST00000393773 PAPPA2Q9BXP8 1791 aa20.03■□□□□ 0.8
CHMP3-202ENST00000393773 FAM155AB1AL88 458 aaPredicted RBP20.03■□□□□ 0.8
CHMP3-202ENST00000393773 ADM5C9JUS6 153 aa20.03■□□□□ 0.8
CHMP3-202ENST00000393773 RIMBP2O15034 1052 aa20.03■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms