RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 GPR108Q9NPR9 543 aa22.21■■□□□ 1.15
CCDC88C-203ENST00000389856 ANKRD18BA2A2Z9 1011 aa22.2■■□□□ 1.15
CCDC88C-203ENST00000389856 DEKP35659 375 aaKnown RBP22.2■■□□□ 1.15
CCDC88C-203ENST00000389856 SUSD4Q5VX71 490 aa22.2■■□□□ 1.15
CCDC88C-203ENST00000389856 TBC1D9Q6ZT07 1266 aa22.2■■□□□ 1.15
CCDC88C-203ENST00000389856 KLHDC4Q8TBB5 520 aa22.2■■□□□ 1.15
CCDC88C-203ENST00000389856 NYXQ9GZU5 481 aa22.2■■□□□ 1.15
CCDC88C-203ENST00000389856 TUBGCP6Q96RT7 1819 aa22.2■■□□□ 1.14
CCDC88C-203ENST00000389856 RFC4P35249 363 aa22.2■■□□□ 1.14
CCDC88C-203ENST00000389856 C22orf23Q9BZE7 217 aa22.2■■□□□ 1.14
CCDC88C-203ENST00000389856 TRIM6-TRIM34B2RNG4 842 aa22.19■■□□□ 1.14
CCDC88C-203ENST00000389856 TTLL11Q8NHH1 800 aa22.19■■□□□ 1.14
CCDC88C-203ENST00000389856 SLC4A3P48751 1232 aa22.18■■□□□ 1.14
CCDC88C-203ENST00000389856 MFAP1P55081 439 aaKnown RBP22.18■■□□□ 1.14
CCDC88C-203ENST00000389856 CNTROBQ8N137 903 aa22.18■■□□□ 1.14
CCDC88C-203ENST00000389856 AK9Q5TCS8 1911 aa22.17■■□□□ 1.14
CCDC88C-203ENST00000389856 PLSCR1O15162 318 aa22.17■■□□□ 1.14
CCDC88C-203ENST00000389856 NTSR2O95665 410 aa22.17■■□□□ 1.14
CCDC88C-203ENST00000389856 TNNI3KQ59H18 835 aa22.17■■□□□ 1.14
CCDC88C-203ENST00000389856 SETDB2Q96T68 719 aa22.17■■□□□ 1.14
CCDC88C-203ENST00000389856 FPGT-TNNI3KV9GXZ4 949 aa22.17■■□□□ 1.14
CCDC88C-203ENST00000389856 TFCP2Q12800 502 aa22.17■■□□□ 1.14
CCDC88C-203ENST00000389856 CCDC152Q4G0S7 254 aa22.17■■□□□ 1.14
CCDC88C-203ENST00000389856 USPL1Q5W0Q7 1092 aa22.17■■□□□ 1.14
CCDC88C-203ENST00000389856 EAF2Q96CJ1 260 aaPredicted RBP22.17■■□□□ 1.14
CCDC88C-203ENST00000389856 CEP126Q9P2H0 1117 aa22.17■■□□□ 1.14
CCDC88C-203ENST00000389856 AKAP2Q9Y2D5 859 aa22.17■■□□□ 1.14
CCDC88C-203ENST00000389856 RTL9Q8NET4 1388 aa22.16■■□□□ 1.14
CCDC88C-203ENST00000389856 C4AP0C0L4 1744 aa22.16■■□□□ 1.14
CCDC88C-203ENST00000389856 SSFA2P28290 1259 aa22.16■■□□□ 1.14
CCDC88C-203ENST00000389856 GTF2E1P29083 439 aaPredicted RBP22.16■■□□□ 1.14
CCDC88C-203ENST00000389856 PI4K2BQ8TCG2 481 aa22.16■■□□□ 1.14
CCDC88C-203ENST00000389856 ARHGEF1Q92888 912 aaKnown RBP22.16■■□□□ 1.14
CCDC88C-203ENST00000389856 ITGA6P23229 1130 aa22.15■■□□□ 1.14
CCDC88C-203ENST00000389856 NFKBIBQ15653 356 aa22.15■■□□□ 1.14
CCDC88C-203ENST00000389856 RILPL2Q969X0 211 aa22.15■■□□□ 1.14
CCDC88C-203ENST00000389856 COL24A1Q17RW2 1714 aa22.15■■□□□ 1.14
CCDC88C-203ENST00000389856 UBR3Q6ZT12 1888 aa22.15■■□□□ 1.14
CCDC88C-203ENST00000389856 RGPD3A6NKT7 1758 aaPredicted RBP22.14■■□□□ 1.14
CCDC88C-203ENST00000389856 RGPD4Q7Z3J3 1758 aa22.14■■□□□ 1.14
CCDC88C-203ENST00000389856 REC8O95072 547 aa22.14■■□□□ 1.14
CCDC88C-203ENST00000389856 RBM25P49756 843 aaKnown RBP22.14■■□□□ 1.14
CCDC88C-203ENST00000389856 TXNRD1Q16881 649 aa22.14■■□□□ 1.14
CCDC88C-203ENST00000389856 TSHZ3Q63HK5 1081 aa22.14■■□□□ 1.14
CCDC88C-203ENST00000389856 ATG9AQ7Z3C6 839 aa22.14■■□□□ 1.14
CCDC88C-203ENST00000389856 DDX60Q8IY21 1712 aaKnown RBP22.14■■□□□ 1.14
CCDC88C-203ENST00000389856 LRRC4BQ9NT99 713 aa22.14■■□□□ 1.14
CCDC88C-203ENST00000389856 RGS17Q9UGC6 210 aaPredicted RBP22.14■■□□□ 1.14
CCDC88C-203ENST00000389856 FAM177BA6PVY3 158 aa22.13■■□□□ 1.13
CCDC88C-203ENST00000389856 GREM2Q9H772 168 aa22.13■■□□□ 1.13
CCDC88C-203ENST00000389856 APBA3O96018 575 aa22.13■■□□□ 1.13
CCDC88C-203ENST00000389856 CCDC8Q9H0W5 538 aaPredicted RBP22.13■■□□□ 1.13
CCDC88C-203ENST00000389856 TPTE2Q6XPS3 522 aa22.12■■□□□ 1.13
CCDC88C-203ENST00000389856 LDHAL6AQ6ZMR3 332 aa22.12■■□□□ 1.13
CCDC88C-203ENST00000389856 SYNE4Q8N205 404 aa22.12■■□□□ 1.13
CCDC88C-203ENST00000389856 ZNF594Q96JF6 807 aaPredicted RBP22.12■■□□□ 1.13
CCDC88C-203ENST00000389856 BCL2L12Q9HB09 334 aa22.12■■□□□ 1.13
CCDC88C-203ENST00000389856 CNNM1Q9NRU3 951 aa22.12■■□□□ 1.13
CCDC88C-203ENST00000389856 PHF14O94880 888 aa22.11■■□□□ 1.13
CCDC88C-203ENST00000389856 HCLS1P14317 486 aaPredicted RBP22.11■■□□□ 1.13
CCDC88C-203ENST00000389856 TBC1D9BQ66K14 1250 aa22.11■■□□□ 1.13
CCDC88C-203ENST00000389856 NBPF5PQ86XG9 351 aaPredicted RBP22.11■■□□□ 1.13
CCDC88C-203ENST00000389856 EVI5LQ96CN4 794 aa22.11■■□□□ 1.13
CCDC88C-203ENST00000389856 CARMIL3Q8ND23 1372 aa22.1■■□□□ 1.13
CCDC88C-203ENST00000389856 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP22.1■■□□□ 1.13
CCDC88C-203ENST00000389856 HIP1O00291 1037 aa22.1■■□□□ 1.13
CCDC88C-203ENST00000389856 SLC10A5Q5PT55 438 aa22.1■■□□□ 1.13
CCDC88C-203ENST00000389856 CCDC85AQ96PX6 553 aaPredicted RBP22.1■■□□□ 1.13
CCDC88C-203ENST00000389856 SRP68Q9UHB9 627 aaKnown RBP22.1■■□□□ 1.13
CCDC88C-203ENST00000389856 ZNF609O15014 1411 aa22.1■■□□□ 1.13
CCDC88C-203ENST00000389856 MROH5Q6ZUA9 1318 aa22.1■■□□□ 1.13
CCDC88C-203ENST00000389856 ATP5JP18859 108 aa22.09■■□□□ 1.13
CCDC88C-203ENST00000389856 LRRC24Q50LG9 513 aa22.09■■□□□ 1.13
CCDC88C-203ENST00000389856 BICDL1Q6ZP65 573 aa22.09■■□□□ 1.13
CCDC88C-203ENST00000389856 CDC5LQ99459 802 aaKnown RBP22.09■■□□□ 1.13
CCDC88C-203ENST00000389856 TBC1D2Q9BYX2 928 aa22.09■■□□□ 1.13
CCDC88C-203ENST00000389856 LRP5O75197 1615 aa22.09■■□□□ 1.13
CCDC88C-203ENST00000389856 SOCS7O14512 581 aa22.09■■□□□ 1.13
CCDC88C-203ENST00000389856 IGHMBP2P38935 993 aaKnown RBP22.09■■□□□ 1.13
CCDC88C-203ENST00000389856 METTL24Q5JXM2 366 aa22.09■■□□□ 1.13
CCDC88C-203ENST00000389856 FLAD1Q8NFF5 587 aa22.09■■□□□ 1.13
CCDC88C-203ENST00000389856 MPHOSPH8Q99549 860 aa22.09■■□□□ 1.13
CCDC88C-203ENST00000389856 TNS1Q9HBL0 1735 aaKnown RBP22.08■■□□□ 1.13
CCDC88C-203ENST00000389856 NPHP1O15259 732 aa22.08■■□□□ 1.13
CCDC88C-203ENST00000389856 POTEAQ6S8J7 498 aa22.08■■□□□ 1.13
CCDC88C-203ENST00000389856 RUFY2Q8WXA3 655 aa22.08■■□□□ 1.13
CCDC88C-203ENST00000389856 NEUROD6Q96NK8 337 aa22.08■■□□□ 1.13
CCDC88C-203ENST00000389856 DBNLQ9UJU6 430 aaKnown RBP22.08■■□□□ 1.13
CCDC88C-203ENST00000389856 CHMLP26374 656 aa22.07■■□□□ 1.12
CCDC88C-203ENST00000389856 SF3B3Q15393 1217 aaKnown RBP22.07■■□□□ 1.12
CCDC88C-203ENST00000389856 ERFEQ4G0M1 354 aa22.07■■□□□ 1.12
CCDC88C-203ENST00000389856 TICAM2Q86XR7 235 aa22.07■■□□□ 1.12
CCDC88C-203ENST00000389856 SNX21Q969T3 373 aa22.07■■□□□ 1.12
CCDC88C-203ENST00000389856 EPB41L2O43491 1005 aaKnown RBP22.06■■□□□ 1.12
CCDC88C-203ENST00000389856 PUS3Q9BZE2 481 aaKnown RBP22.06■■□□□ 1.12
CCDC88C-203ENST00000389856 TLR7Q9NYK1 1049 aaKnown RBP22.06■■□□□ 1.12
CCDC88C-203ENST00000389856 RIPOR2Q9Y4F9 1068 aa22.06■■□□□ 1.12
CCDC88C-203ENST00000389856 ABCC12Q96J65 1359 aa22.06■■□□□ 1.12
CCDC88C-203ENST00000389856 A0A1B0GUL7 405 aa22.06■■□□□ 1.12
CCDC88C-203ENST00000389856 CCDC158Q5M9N0 1113 aa22.06■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms