RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 SAP30BPQ9UHR5 308 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-202ENST00000381753 ANGEL1Q9UNK9 670 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-202ENST00000381753 PALM3A6NDB9 673 aaPredicted RBP10.73□□□□□ -0.69
LIMCH1-202ENST00000381753 AZI2Q9H6S1 392 aa10.73□□□□□ -0.69
LIMCH1-202ENST00000381753 ANXA1P04083 346 aa10.73□□□□□ -0.69
LIMCH1-202ENST00000381753 DHX8Q14562 1220 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-202ENST00000381753 SMC1AQ14683 1233 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-202ENST00000381753 MCM9Q9NXL9 1143 aa10.73□□□□□ -0.69
LIMCH1-202ENST00000381753 ZBTB21Q9ULJ3 1066 aa10.73□□□□□ -0.69
LIMCH1-202ENST00000381753 NOB1Q9ULX3 412 aaKnown RBP10.73□□□□□ -0.69
LIMCH1-202ENST00000381753 SPDYE3A6NKU9 549 aa10.73□□□□□ -0.69
LIMCH1-202ENST00000381753 CCDC82Q8N4S0 544 aa10.73□□□□□ -0.69
LIMCH1-202ENST00000381753 FAM212AQ96EL1 285 aa10.73□□□□□ -0.69
LIMCH1-202ENST00000381753 PNMA3Q9UL41 463 aa10.73□□□□□ -0.69
LIMCH1-202ENST00000381753 ZNF213O14771 459 aa10.72□□□□□ -0.69
LIMCH1-202ENST00000381753 STK3Q13188 491 aa10.72□□□□□ -0.69
LIMCH1-202ENST00000381753 KIAA0825Q8IV33 1275 aa10.72□□□□□ -0.69
LIMCH1-202ENST00000381753 SYCP3Q8IZU3 236 aa10.72□□□□□ -0.69
LIMCH1-202ENST00000381753 LOC102724428A0A0B4J2F2 783 aa10.72□□□□□ -0.69
LIMCH1-202ENST00000381753 MAGEB6P1A0A0J9YX57 407 aa10.72□□□□□ -0.69
LIMCH1-202ENST00000381753 SIK1P57059 783 aa10.72□□□□□ -0.69
LIMCH1-202ENST00000381753 KCTD2Q14681 263 aa10.72□□□□□ -0.69
LIMCH1-202ENST00000381753 SSX2IPQ9Y2D8 614 aa10.72□□□□□ -0.69
LIMCH1-202ENST00000381753 CC2D2BQ6DHV5 1058 aa10.72□□□□□ -0.69
LIMCH1-202ENST00000381753 TFRCP02786 760 aaKnown RBP10.72□□□□□ -0.69
LIMCH1-202ENST00000381753 TEKT1Q969V4 418 aa10.72□□□□□ -0.69
LIMCH1-202ENST00000381753 BOLA2Q9H3K6 86 aa10.72□□□□□ -0.69
LIMCH1-202ENST00000381753 IFIT3O14879 490 aaKnown RBP10.71□□□□□ -0.69
LIMCH1-202ENST00000381753 TXNRD1Q16881 649 aa10.71□□□□□ -0.69
LIMCH1-202ENST00000381753 KRT26Q7Z3Y9 468 aa10.71□□□□□ -0.69
LIMCH1-202ENST00000381753 DENND2AQ9ULE3 1009 aa10.71□□□□□ -0.69
LIMCH1-202ENST00000381753 TTF2Q9UNY4 1162 aaKnown RBP10.71□□□□□ -0.69
LIMCH1-202ENST00000381753 SLC12A7Q9Y666 1083 aa10.71□□□□□ -0.69
LIMCH1-202ENST00000381753 HOXC9P31274 260 aa10.71□□□□□ -0.69
LIMCH1-202ENST00000381753 KCNQ4P56696 695 aa10.71□□□□□ -0.69
LIMCH1-202ENST00000381753 DNAJC10Q8IXB1 793 aa10.71□□□□□ -0.69
LIMCH1-202ENST00000381753 SLC4A4Q9Y6R1 1079 aa10.71□□□□□ -0.69
LIMCH1-202ENST00000381753 LTKP29376 864 aa10.71□□□□□ -0.69
LIMCH1-202ENST00000381753 NSMFQ6X4W1 530 aa10.71□□□□□ -0.69
LIMCH1-202ENST00000381753 STXBP4Q6ZWJ1 553 aa10.71□□□□□ -0.69
LIMCH1-202ENST00000381753 TTC30AQ86WT1 665 aa10.71□□□□□ -0.69
LIMCH1-202ENST00000381753 PPM1EQ8WY54 764 aa10.71□□□□□ -0.7
LIMCH1-202ENST00000381753 CCDC8Q9H0W5 538 aaPredicted RBP10.71□□□□□ -0.7
LIMCH1-202ENST00000381753 U3KPZ7 1027 aaPredicted RBP10.71□□□□□ -0.7
LIMCH1-202ENST00000381753 KIF28PB7ZC32 967 aa10.71□□□□□ -0.7
LIMCH1-202ENST00000381753 PUF60Q9UHX1 559 aaKnown RBP10.71□□□□□ -0.7
LIMCH1-202ENST00000381753 PHACTR2O75167 634 aa10.7□□□□□ -0.7
LIMCH1-202ENST00000381753 MYCLP12524 364 aaPredicted RBP10.7□□□□□ -0.7
LIMCH1-202ENST00000381753 ANAPC15P60006 121 aa10.7□□□□□ -0.7
LIMCH1-202ENST00000381753 MFSD6Q6ZSS7 791 aa10.7□□□□□ -0.7
LIMCH1-202ENST00000381753 RSPH3Q86UC2 560 aa10.7□□□□□ -0.7
LIMCH1-202ENST00000381753 JMYQ8N9B5 988 aa10.7□□□□□ -0.7
LIMCH1-202ENST00000381753 FLT4P35916 1363 aa10.7□□□□□ -0.7
LIMCH1-202ENST00000381753 STK38Q15208 465 aa10.7□□□□□ -0.7
LIMCH1-202ENST00000381753 SPATA32Q96LK8 384 aa10.7□□□□□ -0.7
LIMCH1-202ENST00000381753 CALM1P0DP23 149 aa10.7□□□□□ -0.7
LIMCH1-202ENST00000381753 CALM2P0DP24 149 aa10.7□□□□□ -0.7
LIMCH1-202ENST00000381753 CALM3P0DP25 149 aa10.7□□□□□ -0.7
LIMCH1-202ENST00000381753 SLC27A3Q5K4L6 730 aa10.7□□□□□ -0.7
LIMCH1-202ENST00000381753 BRINP3Q76B58 766 aa10.7□□□□□ -0.7
LIMCH1-202ENST00000381753 TBC1D22AQ8WUA7 517 aa10.7□□□□□ -0.7
LIMCH1-202ENST00000381753 C6orf50Q9HD87 102 aa10.7□□□□□ -0.7
LIMCH1-202ENST00000381753 CEP170Q5SW79 1584 aa10.7□□□□□ -0.7
LIMCH1-202ENST00000381753 SYCP2Q9BX26 1530 aa10.7□□□□□ -0.7
LIMCH1-202ENST00000381753 ATP2B4P23634 1241 aa10.7□□□□□ -0.7
LIMCH1-202ENST00000381753 EZH2Q15910 746 aaKnown RBP10.69□□□□□ -0.7
LIMCH1-202ENST00000381753 PKD2L1Q9P0L9 805 aa10.69□□□□□ -0.7
LIMCH1-202ENST00000381753 RAPGEF6Q8TEU7 1601 aa10.69□□□□□ -0.7
LIMCH1-202ENST00000381753 CLRN2A0PK11 232 aa10.69□□□□□ -0.7
LIMCH1-202ENST00000381753 GOLIM4O00461 696 aa10.69□□□□□ -0.7
LIMCH1-202ENST00000381753 SREBF2Q12772 1141 aa10.69□□□□□ -0.7
LIMCH1-202ENST00000381753 WDR66Q8TBY9 1149 aa10.69□□□□□ -0.7
LIMCH1-202ENST00000381753 NR2E3Q9Y5X4 410 aa10.69□□□□□ -0.7
LIMCH1-202ENST00000381753 GPATCH8Q9UKJ3 1502 aaKnown RBP10.69□□□□□ -0.7
LIMCH1-202ENST00000381753 KCNQ2O43526 872 aa10.69□□□□□ -0.7
LIMCH1-202ENST00000381753 PRKCSHP14314 528 aaPredicted RBP10.69□□□□□ -0.7
LIMCH1-202ENST00000381753 SLC17A8Q8NDX2 589 aa10.69□□□□□ -0.7
LIMCH1-202ENST00000381753 UGGT1Q9NYU2 1555 aa10.69□□□□□ -0.7
LIMCH1-202ENST00000381753 ANKRD35Q8N283 1001 aa10.69□□□□□ -0.7
LIMCH1-202ENST00000381753 ERMNQ8TAM6 284 aa10.69□□□□□ -0.7
LIMCH1-202ENST00000381753 CHPF2Q9P2E5 772 aa10.69□□□□□ -0.7
LIMCH1-202ENST00000381753 ADAMTS8Q9UP79 889 aa10.69□□□□□ -0.7
LIMCH1-202ENST00000381753 PI4KAP2A4QPH2 592 aa10.68□□□□□ -0.7
LIMCH1-202ENST00000381753 TTLL5Q6EMB2 1281 aa10.68□□□□□ -0.7
LIMCH1-202ENST00000381753 CCAR2Q8N163 923 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-202ENST00000381753 FNBP4Q8N3X1 1017 aaPredicted RBP10.68□□□□□ -0.7
LIMCH1-202ENST00000381753 PI4KAP1Q8N8J0 262 aa10.68□□□□□ -0.7
LIMCH1-202ENST00000381753 CFAP74Q9C0B2 1584 aa10.68□□□□□ -0.7
LIMCH1-202ENST00000381753 EIF4E1BA6NMX2 242 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-202ENST00000381753 RNMTO43148 476 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-202ENST00000381753 MFSD14CQ5VZR4 134 aa10.68□□□□□ -0.7
LIMCH1-202ENST00000381753 KIF1BPQ96EK5 621 aa10.68□□□□□ -0.7
LIMCH1-202ENST00000381753 SDF4Q9BRK5 362 aa10.68□□□□□ -0.7
LIMCH1-202ENST00000381753 FAM13BQ9NYF5 915 aa10.68□□□□□ -0.7
LIMCH1-202ENST00000381753 MKRN1Q9UHC7 482 aaKnown RBP10.68□□□□□ -0.7
LIMCH1-202ENST00000381753 DNM2P50570 870 aa10.68□□□□□ -0.7
LIMCH1-202ENST00000381753 BCAMP50895 628 aa10.68□□□□□ -0.7
LIMCH1-202ENST00000381753 HUNKP57058 714 aa10.68□□□□□ -0.7
LIMCH1-202ENST00000381753 DPH6Q7L8W6 267 aa10.68□□□□□ -0.7
LIMCH1-202ENST00000381753 CCDC39Q9UFE4 941 aa10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms