RNA–Protein interactions for RNA: ENST00000378825.4

CCDC3-201, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CCDC3, Length 2,731 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-201ENST00000378825 BLOC1S2Q6QNY1 142 aa21.86■■□□□ 1.09
CCDC3-201ENST00000378825 NOL12Q9UGY1 213 aaKnown RBP eCLIP21.86■■□□□ 1.09
CCDC3-201ENST00000378825 V9GYY5 206 aaPredicted RBP21.86■■□□□ 1.09
CCDC3-201ENST00000378825 ELP1O95163 1332 aa21.85■■□□□ 1.09
CCDC3-201ENST00000378825 KAZALD1Q96I82 304 aa21.85■■□□□ 1.09
CCDC3-201ENST00000378825 CLSTN2Q9H4D0 955 aa21.85■■□□□ 1.09
CCDC3-201ENST00000378825 CLIP2Q9UDT6 1046 aa21.85■■□□□ 1.09
CCDC3-201ENST00000378825 NPHP4O75161 1426 aaPredicted RBP21.85■■□□□ 1.09
CCDC3-201ENST00000378825 ZNF530Q6P9A1 599 aaPredicted RBP21.85■■□□□ 1.09
CCDC3-201ENST00000378825 LRRC2Q9BYS8 371 aa21.84■■□□□ 1.09
CCDC3-201ENST00000378825 RPS6KB1P23443 525 aa21.84■■□□□ 1.09
CCDC3-201ENST00000378825 ERCC4Q92889 916 aaPredicted RBP21.84■■□□□ 1.09
CCDC3-201ENST00000378825 FSD1Q9BTV5 496 aa21.84■■□□□ 1.09
CCDC3-201ENST00000378825 C11orf57Q6ZUT1 292 aaPredicted RBP21.83■■□□□ 1.09
CCDC3-201ENST00000378825 SUCLG2Q96I99 432 aa21.83■■□□□ 1.09
CCDC3-201ENST00000378825 GTPBP4Q9BZE4 634 aaKnown RBP21.83■■□□□ 1.09
CCDC3-201ENST00000378825 NPHP3Q7Z494 1330 aa21.83■■□□□ 1.08
CCDC3-201ENST00000378825 TPD52L1Q16890 204 aaPredicted RBP21.83■■□□□ 1.08
CCDC3-201ENST00000378825 TDRD7Q8NHU6 1098 aaKnown RBP21.83■■□□□ 1.08
CCDC3-201ENST00000378825 TEFQ10587 303 aa21.82■■□□□ 1.08
CCDC3-201ENST00000378825 MTX1Q13505 466 aa21.82■■□□□ 1.08
CCDC3-201ENST00000378825 BRF1Q92994 677 aa21.82■■□□□ 1.08
CCDC3-201ENST00000378825 FBXW7Q969H0 707 aa21.82■■□□□ 1.08
CCDC3-201ENST00000378825 SCAND2PQ9GZW5 306 aaPredicted RBP21.82■■□□□ 1.08
CCDC3-201ENST00000378825 BICC1Q9H694 974 aaKnown RBP21.82■■□□□ 1.08
CCDC3-201ENST00000378825 CTNNA3Q9UI47 895 aa21.82■■□□□ 1.08
CCDC3-201ENST00000378825 CEMIPQ8WUJ3 1361 aa21.81■■□□□ 1.08
CCDC3-201ENST00000378825 RBM43Q6ZSC3 357 aaKnown RBP21.81■■□□□ 1.08
CCDC3-201ENST00000378825 GPATCH3Q96I76 525 aa21.81■■□□□ 1.08
CCDC3-201ENST00000378825 BTBD11A6QL63 1104 aa21.81■■□□□ 1.08
CCDC3-201ENST00000378825 AIMP1Q12904 312 aaKnown RBP21.81■■□□□ 1.08
CCDC3-201ENST00000378825 COL15A1P39059 1388 aa21.81■■□□□ 1.08
CCDC3-201ENST00000378825 LTN1O94822 1766 aa21.81■■□□□ 1.08
CCDC3-201ENST00000378825 SMTNL1A8MU46 457 aa21.8■■□□□ 1.08
CCDC3-201ENST00000378825 PDCP20941 246 aa21.8■■□□□ 1.08
CCDC3-201ENST00000378825 CCDC129Q6ZRS4 1044 aa21.8■■□□□ 1.08
CCDC3-201ENST00000378825 DDX19AQ9NUU7 478 aaKnown RBP21.8■■□□□ 1.08
CCDC3-201ENST00000378825 GCP02774 474 aa21.8■■□□□ 1.08
CCDC3-201ENST00000378825 USP16Q9Y5T5 823 aa21.8■■□□□ 1.08
CCDC3-201ENST00000378825 PSMA5P28066 241 aa21.79■■□□□ 1.08
CCDC3-201ENST00000378825 BABAM1Q9NWV8 329 aa21.79■■□□□ 1.08
CCDC3-201ENST00000378825 SEC62Q99442 399 aaKnown RBP21.79■■□□□ 1.08
CCDC3-201ENST00000378825 TRMT1Q9NXH9 659 aaKnown RBP21.79■■□□□ 1.08
CCDC3-201ENST00000378825 A0A0U1RQG5 324 aaPredicted RBP21.79■■□□□ 1.08
CCDC3-201ENST00000378825 CCDC112Q8NEF3 446 aa21.79■■□□□ 1.08
CCDC3-201ENST00000378825 RESTQ13127 1097 aa21.78■■□□□ 1.08
CCDC3-201ENST00000378825 IQCB1Q15051 598 aa21.78■■□□□ 1.08
CCDC3-201ENST00000378825 AXIN2Q9Y2T1 843 aa21.78■■□□□ 1.08
CCDC3-201ENST00000378825 NFAT5O94916 1531 aa21.77■■□□□ 1.08
CCDC3-201ENST00000378825 FILIP1Q7Z7B0 1213 aa21.77■■□□□ 1.08
CCDC3-201ENST00000378825 KCNH5Q8NCM2 988 aa21.77■■□□□ 1.08
CCDC3-201ENST00000378825 SLFNL1Q499Z3 407 aa21.77■■□□□ 1.07
CCDC3-201ENST00000378825 SYTL4Q96C24 671 aaPredicted RBP21.77■■□□□ 1.07
CCDC3-201ENST00000378825 GOLPH3LQ9H4A5 285 aa21.77■■□□□ 1.07
CCDC3-201ENST00000378825 MED23Q9ULK4 1368 aa21.76■■□□□ 1.07
CCDC3-201ENST00000378825 RGPD2P0DJD1 1756 aa21.76■■□□□ 1.07
CCDC3-201ENST00000378825 G3BP1Q13283 466 aaKnown RBP eCLIP21.76■■□□□ 1.07
CCDC3-201ENST00000378825 LRRC8AQ8IWT6 810 aa21.76■■□□□ 1.07
CCDC3-201ENST00000378825 CCDC9Q9Y3X0 531 aaKnown RBP21.76■■□□□ 1.07
CCDC3-201ENST00000378825 TAF5LO75529 589 aa21.76■■□□□ 1.07
CCDC3-201ENST00000378825 CEP135Q66GS9 1140 aa21.76■■□□□ 1.07
CCDC3-201ENST00000378825 ANKRD24Q8TF21 1146 aa21.76■■□□□ 1.07
CCDC3-201ENST00000378825 ZNF215Q9UL58 517 aaPredicted RBP21.76■■□□□ 1.07
CCDC3-201ENST00000378825 PLEKHO1Q53GL0 409 aaPredicted RBP21.75■■□□□ 1.07
CCDC3-201ENST00000378825 DBF4Q9UBU7 674 aaPredicted RBP21.75■■□□□ 1.07
CCDC3-201ENST00000378825 AKAP4Q5JQC9 854 aa21.75■■□□□ 1.07
CCDC3-201ENST00000378825 Q6ZUG5 572 aa21.75■■□□□ 1.07
CCDC3-201ENST00000378825 ERC1Q8IUD2 1116 aa21.75■■□□□ 1.07
CCDC3-201ENST00000378825 GTF3C6Q969F1 213 aa21.75■■□□□ 1.07
CCDC3-201ENST00000378825 OGFRQ9NZT2 677 aa21.75■■□□□ 1.07
CCDC3-201ENST00000378825 PXDNQ92626 1479 aa21.74■■□□□ 1.07
CCDC3-201ENST00000378825 NPHP1O15259 732 aa21.74■■□□□ 1.07
CCDC3-201ENST00000378825 HSP90B1P14625 803 aaKnown RBP21.74■■□□□ 1.07
CCDC3-201ENST00000378825 RNF20Q5VTR2 975 aa21.74■■□□□ 1.07
CCDC3-201ENST00000378825 KSR2Q6VAB6 950 aa21.74■■□□□ 1.07
CCDC3-201ENST00000378825 CHD2O14647 1828 aaKnown RBP21.74■■□□□ 1.07
CCDC3-201ENST00000378825 ADGRL3Q9HAR2 1447 aa21.74■■□□□ 1.07
CCDC3-201ENST00000378825 H3BQV1 296 aa21.74■■□□□ 1.07
CCDC3-201ENST00000378825 GRM8O00222 908 aa21.74■■□□□ 1.07
CCDC3-201ENST00000378825 ZC3H6P61129 1189 aaKnown RBP21.74■■□□□ 1.07
CCDC3-201ENST00000378825 C1orf141Q5JVX7 400 aa21.74■■□□□ 1.07
CCDC3-201ENST00000378825 EPHA10Q5JZY3 1008 aa21.74■■□□□ 1.07
CCDC3-201ENST00000378825 IFFO2Q5TF58 517 aa21.74■■□□□ 1.07
CCDC3-201ENST00000378825 RNMTO43148 476 aaKnown RBP21.73■■□□□ 1.07
CCDC3-201ENST00000378825 ANKRD1Q15327 319 aa21.73■■□□□ 1.07
CCDC3-201ENST00000378825 ARHGAP30Q7Z6I6 1101 aaPredicted RBP21.73■■□□□ 1.07
CCDC3-201ENST00000378825 ARHGEF25Q86VW2 580 aa21.73■■□□□ 1.07
CCDC3-201ENST00000378825 KIF20AO95235 890 aa21.73■■□□□ 1.07
CCDC3-201ENST00000378825 GUCY1B3Q02153 619 aa21.73■■□□□ 1.07
CCDC3-201ENST00000378825 FEZ1Q99689 392 aa21.73■■□□□ 1.07
CCDC3-201ENST00000378825 DDX41Q9UJV9 622 aaKnown RBP21.73■■□□□ 1.07
CCDC3-201ENST00000378825 GIGYF1O75420 1035 aaPredicted RBP21.72■■□□□ 1.07
CCDC3-201ENST00000378825 SKILP12757 684 aa21.72■■□□□ 1.07
CCDC3-201ENST00000378825 ADD1P35611 737 aaKnown RBP21.72■■□□□ 1.07
CCDC3-201ENST00000378825 SCRN1Q12765 414 aa21.72■■□□□ 1.07
CCDC3-201ENST00000378825 KMT5BQ4FZB7 885 aa21.72■■□□□ 1.07
CCDC3-201ENST00000378825 ZNF771Q7L3S4 317 aaPredicted RBP21.72■■□□□ 1.07
CCDC3-201ENST00000378825 A0A0G2JLW4 131 aa21.72■■□□□ 1.07
CCDC3-201ENST00000378825 GOLGA6L19H0YKK7 550 aa21.72■■□□□ 1.07
CCDC3-201ENST00000378825 KLHL34Q8N239 644 aa21.72■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms