RNA–Protein interactions for RNA: ENST00000378060.8

VPS36-201, Transcript of vacuolar protein sorting 36 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS36, Length 4,417 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS36-201ENST00000378060 HOXC9P31274 260 aa9.78□□□□□ -0.84
VPS36-201ENST00000378060 FAM177A1Q8N128 213 aaPredicted RBP9.78□□□□□ -0.84
VPS36-201ENST00000378060 CCDC191Q8NCU4 936 aa9.78□□□□□ -0.84
VPS36-201ENST00000378060 UBAC1Q9BSL1 405 aa9.78□□□□□ -0.84
VPS36-201ENST00000378060 INSRP06213 1382 aa9.78□□□□□ -0.84
VPS36-201ENST00000378060 IQSEC2Q5JU85 1478 aa9.78□□□□□ -0.84
VPS36-201ENST00000378060 NCBP3Q53F19 620 aaKnown RBP9.78□□□□□ -0.84
VPS36-201ENST00000378060 TMX3Q96JJ7 454 aa9.78□□□□□ -0.84
VPS36-201ENST00000378060 BOLA2Q9H3K6 86 aa9.78□□□□□ -0.84
VPS36-201ENST00000378060 RNF123Q5XPI4 1314 aa9.78□□□□□ -0.84
VPS36-201ENST00000378060 ARHGEF10O15013 1369 aa9.78□□□□□ -0.84
VPS36-201ENST00000378060 GOLGA6L10A6NI86 522 aa9.78□□□□□ -0.84
VPS36-201ENST00000378060 CCDC181Q5TID7 509 aa9.78□□□□□ -0.84
VPS36-201ENST00000378060 DEF6Q9H4E7 631 aa9.78□□□□□ -0.84
VPS36-201ENST00000378060 CCDC196A0A1B0GTZ2 297 aa9.77□□□□□ -0.84
VPS36-201ENST00000378060 C8orf76Q96K31 380 aa9.77□□□□□ -0.84
VPS36-201ENST00000378060 MPHOSPH8Q99549 860 aa9.77□□□□□ -0.84
VPS36-201ENST00000378060 TSPYL1Q9H0U9 437 aa9.77□□□□□ -0.84
VPS36-201ENST00000378060 HMG20BQ9P0W2 317 aa9.77□□□□□ -0.84
VPS36-201ENST00000378060 SDSP20132 328 aa9.77□□□□□ -0.85
VPS36-201ENST00000378060 ZNF165P49910 485 aa9.77□□□□□ -0.85
VPS36-201ENST00000378060 EIF4A2Q14240 407 aaKnown RBP9.77□□□□□ -0.85
VPS36-201ENST00000378060 RBM42Q9BTD8 480 aaKnown RBP9.77□□□□□ -0.85
VPS36-201ENST00000378060 HYPKQ9NX55 129 aa9.77□□□□□ -0.85
VPS36-201ENST00000378060 KIAA0754O94854 1291 aa9.77□□□□□ -0.85
VPS36-201ENST00000378060 ODF2Q5BJF6 829 aa9.77□□□□□ -0.85
VPS36-201ENST00000378060 FAM83GA6ND36 823 aa9.76□□□□□ -0.85
VPS36-201ENST00000378060 USP8P40818 1118 aa9.76□□□□□ -0.85
VPS36-201ENST00000378060 ARHGEF25Q86VW2 580 aa9.76□□□□□ -0.85
VPS36-201ENST00000378060 AATKQ6ZMQ8 1374 aa9.76□□□□□ -0.85
VPS36-201ENST00000378060 GJB2P29033 226 aa9.76□□□□□ -0.85
VPS36-201ENST00000378060 RAB3GAP1Q15042 981 aa9.76□□□□□ -0.85
VPS36-201ENST00000378060 NUP133Q8WUM0 1156 aa9.76□□□□□ -0.85
VPS36-201ENST00000378060 PRDM11Q9NQV5 511 aa9.76□□□□□ -0.85
VPS36-201ENST00000378060 TDO2P48775 406 aa9.76□□□□□ -0.85
VPS36-201ENST00000378060 ZSCAN16Q9H4T2 348 aaPredicted RBP9.76□□□□□ -0.85
VPS36-201ENST00000378060 STRN4Q9NRL3 753 aa9.76□□□□□ -0.85
VPS36-201ENST00000378060 PAXBP1Q9Y5B6 917 aa9.76□□□□□ -0.85
VPS36-201ENST00000378060 PATL2C9JE40 543 aaKnown RBP9.76□□□□□ -0.85
VPS36-201ENST00000378060 ZSCAN22P10073 491 aaPredicted RBP9.76□□□□□ -0.85
VPS36-201ENST00000378060 TOP1P11387 765 aaKnown RBP9.76□□□□□ -0.85
VPS36-201ENST00000378060 PDE1AP54750 535 aa9.76□□□□□ -0.85
VPS36-201ENST00000378060 STX1AQ16623 288 aa9.76□□□□□ -0.85
VPS36-201ENST00000378060 GDPD2Q9HCC8 539 aa9.76□□□□□ -0.85
VPS36-201ENST00000378060 ZKSCAN5Q9Y2L8 839 aa9.76□□□□□ -0.85
VPS36-201ENST00000378060 LRP6O75581 1613 aa9.76□□□□□ -0.85
VPS36-201ENST00000378060 GOLGA6L9A6NEM1 432 aa9.75□□□□□ -0.85
VPS36-201ENST00000378060 CKAP2LQ8IYA6 745 aa9.75□□□□□ -0.85
VPS36-201ENST00000378060 IFIT1P09914 478 aaKnown RBP9.75□□□□□ -0.85
VPS36-201ENST00000378060 SOGA3Q5TF21 947 aa9.75□□□□□ -0.85
VPS36-201ENST00000378060 CCDC148Q8NFR7 591 aa9.75□□□□□ -0.85
VPS36-201ENST00000378060 BMP2KQ9NSY1 1161 aaPredicted RBP9.75□□□□□ -0.85
VPS36-201ENST00000378060 CDK12Q9NYV4 1490 aaPredicted RBP9.75□□□□□ -0.85
VPS36-201ENST00000378060 URI1O94763 535 aaPredicted RBP9.75□□□□□ -0.85
VPS36-201ENST00000378060 KRT18P05783 430 aaKnown RBP9.75□□□□□ -0.85
VPS36-201ENST00000378060 PRKCSHP14314 528 aaPredicted RBP9.75□□□□□ -0.85
VPS36-201ENST00000378060 AIDAQ96BJ3 306 aa9.75□□□□□ -0.85
VPS36-201ENST00000378060 PHAXQ9H814 394 aaKnown RBP9.75□□□□□ -0.85
VPS36-201ENST00000378060 FLT4P35916 1363 aa9.75□□□□□ -0.85
VPS36-201ENST00000378060 MCM3P25205 808 aa9.74□□□□□ -0.85
VPS36-201ENST00000378060 IL13P35225 146 aa9.74□□□□□ -0.85
VPS36-201ENST00000378060 ZBTB40Q9NUA8 1239 aa9.74□□□□□ -0.85
VPS36-201ENST00000378060 COL18A1P39060 1754 aa9.74□□□□□ -0.85
VPS36-201ENST00000378060 KIF5CO60282 957 aa9.74□□□□□ -0.85
VPS36-201ENST00000378060 CBX1P83916 185 aa9.74□□□□□ -0.85
VPS36-201ENST00000378060 MAP9Q49MG5 647 aa9.74□□□□□ -0.85
VPS36-201ENST00000378060 PPP1R42Q7Z4L9 355 aa9.74□□□□□ -0.85
VPS36-201ENST00000378060 MRPL50Q8N5N7 158 aaKnown RBP9.74□□□□□ -0.85
VPS36-201ENST00000378060 FSIP1Q8NA03 581 aa9.74□□□□□ -0.85
VPS36-201ENST00000378060 C8orf37Q96NL8 207 aa9.74□□□□□ -0.85
VPS36-201ENST00000378060 ESYT1Q9BSJ8 1104 aa9.74□□□□□ -0.85
VPS36-201ENST00000378060 DCTPP1Q9H773 170 aa9.74□□□□□ -0.85
VPS36-201ENST00000378060 CALCOCO1Q9P1Z2 691 aa9.74□□□□□ -0.85
VPS36-201ENST00000378060 MTMR7Q9Y216 660 aa9.74□□□□□ -0.85
VPS36-201ENST00000378060 CAMTA1Q9Y6Y1 1673 aa9.74□□□□□ -0.85
VPS36-201ENST00000378060 COL22A1Q8NFW1 1626 aaPredicted RBP9.74□□□□□ -0.85
VPS36-201ENST00000378060 IDH1O75874 414 aaKnown RBP9.74□□□□□ -0.85
VPS36-201ENST00000378060 HCLS1P14317 486 aaPredicted RBP9.74□□□□□ -0.85
VPS36-201ENST00000378060 C16orf45Q96MC5 204 aaPredicted RBP9.74□□□□□ -0.85
VPS36-201ENST00000378060 CCDC8Q9H0W5 538 aaPredicted RBP9.74□□□□□ -0.85
VPS36-201ENST00000378060 RBM27Q9P2N5 1060 aaKnown RBP9.74□□□□□ -0.85
VPS36-201ENST00000378060 EIF5P55010 431 aaKnown RBP9.74□□□□□ -0.85
VPS36-201ENST00000378060 TOM1L2Q6ZVM7 507 aa9.74□□□□□ -0.85
VPS36-201ENST00000378060 RHPN1Q8TCX5 695 aa9.74□□□□□ -0.85
VPS36-201ENST00000378060 CCDC102AQ96A19 550 aa9.74□□□□□ -0.85
VPS36-201ENST00000378060 INTS4Q96HW7 963 aaKnown RBP9.74□□□□□ -0.85
VPS36-201ENST00000378060 PANK2Q9BZ23 570 aa9.74□□□□□ -0.85
VPS36-201ENST00000378060 BTG4Q9NY30 223 aa9.74□□□□□ -0.85
VPS36-201ENST00000378060 TFIP11Q9UBB9 837 aaKnown RBP9.74□□□□□ -0.85
VPS36-201ENST00000378060 NBPF6Q5VWK0 638 aa9.73□□□□□ -0.85
VPS36-201ENST00000378060 ANKRD24Q8TF21 1146 aa9.73□□□□□ -0.85
VPS36-201ENST00000378060 NBPF4Q96M43 638 aa9.73□□□□□ -0.85
VPS36-201ENST00000378060 CRACR2AQ9BSW2 395 aa9.73□□□□□ -0.85
VPS36-201ENST00000378060 SYCP1Q15431 976 aa9.73□□□□□ -0.85
VPS36-201ENST00000378060 ZNF397Q8NF99 534 aaPredicted RBP9.73□□□□□ -0.85
VPS36-201ENST00000378060 FAM200AQ8TCP9 573 aa9.73□□□□□ -0.85
VPS36-201ENST00000378060 IP6K1Q92551 441 aa9.73□□□□□ -0.85
VPS36-201ENST00000378060 CCDC171Q6TFL3 1326 aa9.73□□□□□ -0.85
VPS36-201ENST00000378060 FAM177BA6PVY3 158 aa9.73□□□□□ -0.85
VPS36-201ENST00000378060 NOLC1Q14978 699 aaKnown RBP eCLIP9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms