RNA–Protein interactions for RNA: ENST00000360280.7

VPS13A-203, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VPS13A, Length 15,320 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-203ENST00000360280 SPTY2D1Q68D10 685 aaPredicted RBP10.57□□□□□ -0.72
VPS13A-203ENST00000360280 UTP14AQ9BVJ6 771 aaKnown RBP10.57□□□□□ -0.72
VPS13A-203ENST00000360280 UBA7P41226 1012 aa10.57□□□□□ -0.72
VPS13A-203ENST00000360280 N4BP3O15049 544 aa10.57□□□□□ -0.72
VPS13A-203ENST00000360280 TBCAO75347 108 aaKnown RBP10.57□□□□□ -0.72
VPS13A-203ENST00000360280 ERMNQ8TAM6 284 aa10.56□□□□□ -0.72
VPS13A-203ENST00000360280 ZNF213O14771 459 aa10.56□□□□□ -0.72
VPS13A-203ENST00000360280 GPR161Q8N6U8 529 aaKnown RBP10.56□□□□□ -0.72
VPS13A-203ENST00000360280 MAP3K12Q12852 859 aa10.56□□□□□ -0.72
VPS13A-203ENST00000360280 HDXQ7Z353 690 aa10.56□□□□□ -0.72
VPS13A-203ENST00000360280 ERBINQ96RT1 1412 aa10.56□□□□□ -0.72
VPS13A-203ENST00000360280 CLCN1P35523 988 aa10.56□□□□□ -0.72
VPS13A-203ENST00000360280 LRSAM1Q6UWE0 723 aa10.56□□□□□ -0.72
VPS13A-203ENST00000360280 GOLGA8AA7E2F4 631 aa10.56□□□□□ -0.72
VPS13A-203ENST00000360280 POLR3DP05423 398 aaPredicted RBP10.56□□□□□ -0.72
VPS13A-203ENST00000360280 C10orf67Q8IYJ2 551 aa10.56□□□□□ -0.72
VPS13A-203ENST00000360280 CABP2Q9NPB3 220 aa10.56□□□□□ -0.72
VPS13A-203ENST00000360280 ANKRD50Q9ULJ7 1429 aa10.56□□□□□ -0.72
VPS13A-203ENST00000360280 HS1BP3Q53T59 392 aa10.56□□□□□ -0.72
VPS13A-203ENST00000360280 ARHGAP24Q8N264 748 aa10.56□□□□□ -0.72
VPS13A-203ENST00000360280 MSANTD4Q8NCY6 345 aa10.56□□□□□ -0.72
VPS13A-203ENST00000360280 GAS8O95995 478 aa10.56□□□□□ -0.72
VPS13A-203ENST00000360280 TRPC3Q13507 836 aa10.56□□□□□ -0.72
VPS13A-203ENST00000360280 SEPT14Q6ZU15 432 aa10.56□□□□□ -0.72
VPS13A-203ENST00000360280 CDCA7LQ96GN5 454 aa10.56□□□□□ -0.72
VPS13A-203ENST00000360280 KCNG4Q8TDN1 519 aa10.56□□□□□ -0.72
VPS13A-203ENST00000360280 CECR2Q9BXF3 1484 aa10.56□□□□□ -0.72
VPS13A-203ENST00000360280 SH3BP5O60239 455 aa10.56□□□□□ -0.72
VPS13A-203ENST00000360280 VPS52Q8N1B4 723 aa10.56□□□□□ -0.72
VPS13A-203ENST00000360280 IMPG2Q9BZV3 1241 aa10.55□□□□□ -0.72
VPS13A-203ENST00000360280 TDRD9Q8NDG6 1382 aaKnown RBP10.55□□□□□ -0.72
VPS13A-203ENST00000360280 NLRP5P59047 1200 aa10.55□□□□□ -0.72
VPS13A-203ENST00000360280 NKIRAS1Q9NYS0 192 aa10.55□□□□□ -0.72
VPS13A-203ENST00000360280 GJB2P29033 226 aa10.55□□□□□ -0.72
VPS13A-203ENST00000360280 STAT6P42226 847 aa10.55□□□□□ -0.72
VPS13A-203ENST00000360280 NOLC1Q14978 699 aaKnown RBP eCLIP10.55□□□□□ -0.72
VPS13A-203ENST00000360280 AFAP1L2Q8N4X5 818 aa10.55□□□□□ -0.72
VPS13A-203ENST00000360280 SKILP12757 684 aa10.55□□□□□ -0.72
VPS13A-203ENST00000360280 BIN1O00499 593 aa10.55□□□□□ -0.72
VPS13A-203ENST00000360280 BICD1Q96G01 975 aa10.55□□□□□ -0.72
VPS13A-203ENST00000360280 NUTM2GQ5VZR2 741 aa10.55□□□□□ -0.72
VPS13A-203ENST00000360280 RAB3IPQ96QF0 476 aaPredicted RBP10.55□□□□□ -0.72
VPS13A-203ENST00000360280 MAP7Q14244 749 aa10.55□□□□□ -0.72
VPS13A-203ENST00000360280 ARHGAP25P42331 645 aa10.55□□□□□ -0.72
VPS13A-203ENST00000360280 TBC1D31Q96DN5 1066 aa10.55□□□□□ -0.72
VPS13A-203ENST00000360280 RNF216Q9NWF9 866 aaPredicted RBP10.55□□□□□ -0.72
VPS13A-203ENST00000360280 ZSCAN23Q3MJ62 389 aa10.54□□□□□ -0.72
VPS13A-203ENST00000360280 METTL24Q5JXM2 366 aa10.54□□□□□ -0.72
VPS13A-203ENST00000360280 TNNC1P63316 161 aa10.54□□□□□ -0.72
VPS13A-203ENST00000360280 IRX4P78413 519 aa10.54□□□□□ -0.72
VPS13A-203ENST00000360280 TTF1Q15361 905 aaPredicted RBP10.54□□□□□ -0.72
VPS13A-203ENST00000360280 GABPB2Q8TAK5 448 aaPredicted RBP10.54□□□□□ -0.72
VPS13A-203ENST00000360280 SEPT10Q9P0V9 454 aa10.54□□□□□ -0.72
VPS13A-203ENST00000360280 INF2Q27J81 1249 aa10.54□□□□□ -0.72
VPS13A-203ENST00000360280 ZNF354CQ86Y25 554 aa10.54□□□□□ -0.72
VPS13A-203ENST00000360280 ZNF365Q70YC5 407 aa10.54□□□□□ -0.72
VPS13A-203ENST00000360280 PDE4BQ07343 736 aa10.54□□□□□ -0.72
VPS13A-203ENST00000360280 HMG20BQ9P0W2 317 aa10.54□□□□□ -0.72
VPS13A-203ENST00000360280 HDAC9Q9UKV0 1011 aa10.54□□□□□ -0.72
VPS13A-203ENST00000360280 HFM1A2PYH4 1435 aa10.54□□□□□ -0.72
VPS13A-203ENST00000360280 PPP1R7Q15435 360 aa10.54□□□□□ -0.72
VPS13A-203ENST00000360280 ANO6Q4KMQ2 910 aa10.54□□□□□ -0.72
VPS13A-203ENST00000360280 ZNF692Q9BU19 519 aaPredicted RBP10.54□□□□□ -0.72
VPS13A-203ENST00000360280 DNAI1Q9UI46 699 aa10.54□□□□□ -0.72
VPS13A-203ENST00000360280 ATP6V0A2Q9Y487 856 aa10.54□□□□□ -0.72
VPS13A-203ENST00000360280 NBPF8Q3BBV2 869 aa10.54□□□□□ -0.72
VPS13A-203ENST00000360280 NCAPGQ9BPX3 1015 aa10.54□□□□□ -0.72
VPS13A-203ENST00000360280 WHAMMP3Q1A5X7 153 aa10.54□□□□□ -0.72
VPS13A-203ENST00000360280 CLNS1AP54105 237 aaKnown RBP10.53□□□□□ -0.72
VPS13A-203ENST00000360280 PRPF31Q8WWY3 499 aaKnown RBP10.53□□□□□ -0.72
VPS13A-203ENST00000360280 IDEP14735 1019 aa10.53□□□□□ -0.72
VPS13A-203ENST00000360280 CCDC62Q6P9F0 684 aa10.53□□□□□ -0.72
VPS13A-203ENST00000360280 FAM200AQ8TCP9 573 aa10.53□□□□□ -0.72
VPS13A-203ENST00000360280 PPP1R12CQ9BZL4 782 aa10.53□□□□□ -0.72
VPS13A-203ENST00000360280 SPINK5Q9NQ38 1064 aaPredicted RBP10.53□□□□□ -0.72
VPS13A-203ENST00000360280 SYKP43405 635 aa10.53□□□□□ -0.72
VPS13A-203ENST00000360280 PRR16Q569H4 304 aa10.53□□□□□ -0.72
VPS13A-203ENST00000360280 SYT1P21579 422 aa10.53□□□□□ -0.72
VPS13A-203ENST00000360280 PPP1R1BQ9UD71 204 aaPredicted RBP10.53□□□□□ -0.72
VPS13A-203ENST00000360280 SAMM50Q9Y512 469 aa10.53□□□□□ -0.72
VPS13A-203ENST00000360280 CCDC170Q8IYT3 715 aa10.53□□□□□ -0.72
VPS13A-203ENST00000360280 TACC3Q9Y6A5 838 aa10.53□□□□□ -0.72
VPS13A-203ENST00000360280 ZNF444Q8N0Y2 327 aaPredicted RBP10.53□□□□□ -0.72
VPS13A-203ENST00000360280 IFIT1P09914 478 aaKnown RBP10.53□□□□□ -0.72
VPS13A-203ENST00000360280 VCX3AQ9NNX9 186 aa10.53□□□□□ -0.72
VPS13A-203ENST00000360280 OGFRQ9NZT2 677 aa10.53□□□□□ -0.72
VPS13A-203ENST00000360280 MTUS1Q9ULD2 1270 aa10.53□□□□□ -0.72
VPS13A-203ENST00000360280 CLUL1Q15846 466 aa10.53□□□□□ -0.72
VPS13A-203ENST00000360280 TAOK1Q7L7X3 1001 aa10.53□□□□□ -0.72
VPS13A-203ENST00000360280 CALCOCO2Q13137 446 aa10.53□□□□□ -0.72
VPS13A-203ENST00000360280 GEN1Q17RS7 908 aa10.53□□□□□ -0.72
VPS13A-203ENST00000360280 EFCAB5A4FU69 1503 aa10.53□□□□□ -0.72
VPS13A-203ENST00000360280 FCHSD2O94868 740 aa10.53□□□□□ -0.72
VPS13A-203ENST00000360280 GKAP1Q5VSY0 366 aaPredicted RBP10.53□□□□□ -0.72
VPS13A-203ENST00000360280 CSRNP2Q9H175 543 aa10.53□□□□□ -0.72
VPS13A-203ENST00000360280 IARSP41252 1262 aaKnown RBP10.53□□□□□ -0.72
VPS13A-203ENST00000360280 ZNF530Q6P9A1 599 aaPredicted RBP10.53□□□□□ -0.72
VPS13A-203ENST00000360280 UBLCP1Q8WVY7 318 aaPredicted RBP10.53□□□□□ -0.72
VPS13A-203ENST00000360280 MCUR1Q96AQ8 359 aa10.53□□□□□ -0.72
VPS13A-203ENST00000360280 SBDSQ9Y3A5 250 aaKnown RBP eCLIP10.53□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 7.2 ms