RNA–Protein interactions for RNA: ENST00000347519.10

CHMP4A-201, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best) BASIC

Gene CHMP4A, Length 1,393 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-201ENST00000347519 PARP3Q9Y6F1 533 aa23.72■■□□□ 1.39
CHMP4A-201ENST00000347519 KDM2BQ8NHM5 1336 aa23.72■■□□□ 1.39
CHMP4A-201ENST00000347519 RFX5P48382 616 aaPredicted RBP23.71■■□□□ 1.39
CHMP4A-201ENST00000347519 ATF5Q9Y2D1 282 aaPredicted RBP23.71■■□□□ 1.39
CHMP4A-201ENST00000347519 COL4A1P02462 1669 aa23.71■■□□□ 1.39
CHMP4A-201ENST00000347519 TAF1P21675 1872 aa23.7■■□□□ 1.38
CHMP4A-201ENST00000347519 FAM161AQ3B820 660 aa23.7■■□□□ 1.38
CHMP4A-201ENST00000347519 RWDD1Q9H446 243 aaPredicted RBP23.7■■□□□ 1.38
CHMP4A-201ENST00000347519 CHMP3Q9Y3E7 222 aa23.7■■□□□ 1.38
CHMP4A-201ENST00000347519 NPHP1O15259 732 aa23.69■■□□□ 1.38
CHMP4A-201ENST00000347519 KLHDC4Q8TBB5 520 aa23.69■■□□□ 1.38
CHMP4A-201ENST00000347519 GREM2Q9H772 168 aa23.69■■□□□ 1.38
CHMP4A-201ENST00000347519 PA2G4Q9UQ80 394 aaKnown RBP23.69■■□□□ 1.38
CHMP4A-201ENST00000347519 RIC1Q4ADV7 1423 aa23.69■■□□□ 1.38
CHMP4A-201ENST00000347519 MTFR1LQ9H019 292 aa23.68■■□□□ 1.38
CHMP4A-201ENST00000347519 ST5P78524 1137 aa23.67■■□□□ 1.38
CHMP4A-201ENST00000347519 SF3B3Q15393 1217 aaKnown RBP23.67■■□□□ 1.38
CHMP4A-201ENST00000347519 HMMRO75330 724 aa23.66■■□□□ 1.38
CHMP4A-201ENST00000347519 ZNF594Q96JF6 807 aaPredicted RBP23.66■■□□□ 1.38
CHMP4A-201ENST00000347519 PTPN12Q05209 780 aaKnown RBP23.65■■□□□ 1.38
CHMP4A-201ENST00000347519 NLRP3Q96P20 1036 aa23.65■■□□□ 1.38
CHMP4A-201ENST00000347519 DCTPP1Q9H773 170 aa23.65■■□□□ 1.38
CHMP4A-201ENST00000347519 SEC31BQ9NQW1 1179 aa23.65■■□□□ 1.38
CHMP4A-201ENST00000347519 SPEF2Q9C093 1822 aa23.65■■□□□ 1.38
CHMP4A-201ENST00000347519 COL11A2P13942 1736 aaPredicted RBP23.65■■□□□ 1.38
CHMP4A-201ENST00000347519 HSP90B1P14625 803 aaKnown RBP23.65■■□□□ 1.38
CHMP4A-201ENST00000347519 EXOC6BQ9Y2D4 811 aa23.65■■□□□ 1.38
CHMP4A-201ENST00000347519 RTL9Q8NET4 1388 aa23.64■■□□□ 1.37
CHMP4A-201ENST00000347519 ITGA6P23229 1130 aa23.64■■□□□ 1.37
CHMP4A-201ENST00000347519 CCDC152Q4G0S7 254 aa23.64■■□□□ 1.37
CHMP4A-201ENST00000347519 SMC5Q8IY18 1101 aa23.64■■□□□ 1.37
CHMP4A-201ENST00000347519 SGIP1Q9BQI5 828 aa23.64■■□□□ 1.37
CHMP4A-201ENST00000347519 CENPQQ7L2Z9 268 aaPredicted RBP23.63■■□□□ 1.37
CHMP4A-201ENST00000347519 BRIP1Q9BX63 1249 aa23.63■■□□□ 1.37
CHMP4A-201ENST00000347519 COPRSQ9NQ92 184 aa23.63■■□□□ 1.37
CHMP4A-201ENST00000347519 SURF6O75683 361 aaKnown RBP23.62■■□□□ 1.37
CHMP4A-201ENST00000347519 IFIT5Q13325 482 aaKnown RBP23.62■■□□□ 1.37
CHMP4A-201ENST00000347519 CCDC57Q2TAC2 916 aa23.62■■□□□ 1.37
CHMP4A-201ENST00000347519 NOP58Q9Y2X3 529 aaKnown RBP23.62■■□□□ 1.37
CHMP4A-201ENST00000347519 ANKRD18BA2A2Z9 1011 aa23.61■■□□□ 1.37
CHMP4A-201ENST00000347519 KLRG2A4D1S0 409 aaPredicted RBP23.61■■□□□ 1.37
CHMP4A-201ENST00000347519 PTGER2P43116 358 aa23.61■■□□□ 1.37
CHMP4A-201ENST00000347519 PUS3Q9BZE2 481 aaKnown RBP23.61■■□□□ 1.37
CHMP4A-201ENST00000347519 SIL1Q9H173 461 aa23.61■■□□□ 1.37
CHMP4A-201ENST00000347519 C10orf71Q711Q0 1435 aa23.6■■□□□ 1.37
CHMP4A-201ENST00000347519 KIF13BQ9NQT8 1826 aa23.6■■□□□ 1.37
CHMP4A-201ENST00000347519 CRY2Q49AN0 593 aa23.6■■□□□ 1.37
CHMP4A-201ENST00000347519 APBB1O00213 710 aa23.59■■□□□ 1.37
CHMP4A-201ENST00000347519 LRRC24Q50LG9 513 aa23.59■■□□□ 1.37
CHMP4A-201ENST00000347519 SKAP1Q86WV1 359 aa23.58■■□□□ 1.37
CHMP4A-201ENST00000347519 CELF1Q92879 486 aaKnown RBP23.58■■□□□ 1.37
CHMP4A-201ENST00000347519 GCC1Q96CN9 775 aa23.58■■□□□ 1.37
CHMP4A-201ENST00000347519 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.58■■□□□ 1.37
CHMP4A-201ENST00000347519 SMARCA5O60264 1052 aaPredicted RBP23.57■■□□□ 1.36
CHMP4A-201ENST00000347519 POLD1P28340 1107 aa23.57■■□□□ 1.36
CHMP4A-201ENST00000347519 ATG9AQ7Z3C6 839 aa23.57■■□□□ 1.36
CHMP4A-201ENST00000347519 SASH1O94885 1247 aa23.56■■□□□ 1.36
CHMP4A-201ENST00000347519 TAF7LQ5H9L4 462 aa23.56■■□□□ 1.36
CHMP4A-201ENST00000347519 SLC51AQ86UW1 340 aa23.56■■□□□ 1.36
CHMP4A-201ENST00000347519 SPON1Q9HCB6 807 aa23.56■■□□□ 1.36
CHMP4A-201ENST00000347519 PDZRN3Q9UPQ7 1066 aa23.56■■□□□ 1.36
CHMP4A-201ENST00000347519 KIAA1551Q9HCM1 1747 aa23.56■■□□□ 1.36
CHMP4A-201ENST00000347519 EYA2O00167 538 aa23.55■■□□□ 1.36
CHMP4A-201ENST00000347519 PDE6BP35913 854 aa23.55■■□□□ 1.36
CHMP4A-201ENST00000347519 G3BP1Q13283 466 aaKnown RBP eCLIP23.55■■□□□ 1.36
CHMP4A-201ENST00000347519 CACNA1SQ13698 1873 aa23.54■■□□□ 1.36
CHMP4A-201ENST00000347519 SRGNP10124 158 aa23.54■■□□□ 1.36
CHMP4A-201ENST00000347519 CHRNA5P30532 468 aa23.54■■□□□ 1.36
CHMP4A-201ENST00000347519 HOXA10P31260 410 aaPredicted RBP23.54■■□□□ 1.36
CHMP4A-201ENST00000347519 ANKRD45Q5TZF3 282 aa23.54■■□□□ 1.36
CHMP4A-201ENST00000347519 DDX46Q7L014 1031 aaKnown RBP23.54■■□□□ 1.36
CHMP4A-201ENST00000347519 C2CD5Q86YS7 1000 aa23.54■■□□□ 1.36
CHMP4A-201ENST00000347519 RPGRQ92834 1020 aaKnown RBP23.54■■□□□ 1.36
CHMP4A-201ENST00000347519 A0A1B0GUL6 1792 aa23.54■■□□□ 1.36
CHMP4A-201ENST00000347519 NUCB1Q02818 461 aa23.53■■□□□ 1.36
CHMP4A-201ENST00000347519 OS9Q13438 667 aaPredicted RBP23.53■■□□□ 1.36
CHMP4A-201ENST00000347519 RIPOR2Q9Y4F9 1068 aa23.53■■□□□ 1.36
CHMP4A-201ENST00000347519 DLEC1Q9Y238 1755 aa23.53■■□□□ 1.36
CHMP4A-201ENST00000347519 RAB11FIP3O75154 756 aa23.52■■□□□ 1.36
CHMP4A-201ENST00000347519 LDHAL6AQ6ZMR3 332 aa23.52■■□□□ 1.36
CHMP4A-201ENST00000347519 RHPN1Q8TCX5 695 aa23.52■■□□□ 1.36
CHMP4A-201ENST00000347519 CDC5LQ99459 802 aaKnown RBP23.52■■□□□ 1.36
CHMP4A-201ENST00000347519 CIAO1O76071 339 aa23.52■■□□□ 1.36
CHMP4A-201ENST00000347519 RPS8P62241 208 aaKnown RBP23.52■■□□□ 1.36
CHMP4A-201ENST00000347519 GRAPQ13588 217 aa23.52■■□□□ 1.36
CHMP4A-201ENST00000347519 ANKRD18AQ8IVF6 992 aa23.52■■□□□ 1.36
CHMP4A-201ENST00000347519 GRAPLQ8TC17 118 aaPredicted RBP23.52■■□□□ 1.36
CHMP4A-201ENST00000347519 RBM17Q96I25 401 aaKnown RBP23.52■■□□□ 1.36
CHMP4A-201ENST00000347519 LNPKQ9C0E8 428 aa23.52■■□□□ 1.36
CHMP4A-201ENST00000347519 IL1RAPL2Q9NP60 686 aa23.52■■□□□ 1.36
CHMP4A-201ENST00000347519 NPR1P16066 1061 aa23.51■■□□□ 1.35
CHMP4A-201ENST00000347519 IGHMBP2P38935 993 aaKnown RBP23.51■■□□□ 1.35
CHMP4A-201ENST00000347519 TFCP2Q12800 502 aa23.51■■□□□ 1.35
CHMP4A-201ENST00000347519 HSP90AB4PQ58FF6 505 aa23.51■■□□□ 1.35
CHMP4A-201ENST00000347519 CRAMP1Q96RY5 1269 aa23.51■■□□□ 1.35
CHMP4A-201ENST00000347519 BCL11AQ9H165 835 aa23.51■■□□□ 1.35
CHMP4A-201ENST00000347519 CNNM1Q9NRU3 951 aa23.51■■□□□ 1.35
CHMP4A-201ENST00000347519 PDE4AP27815 886 aa23.5■■□□□ 1.35
CHMP4A-201ENST00000347519 IL15P40933 162 aaPredicted RBP23.5■■□□□ 1.35
CHMP4A-201ENST00000347519 CHD1LQ86WJ1 897 aa23.5■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 183.9 ms