RNA–Protein interactions for RNA: ENST00000347519.10

CHMP4A-201, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best) BASIC

Gene CHMP4A, Length 1,393 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-201ENST00000347519 PARP3Q9Y6F1 533 aa23.72■■□□□ 1.39
CHMP4A-201ENST00000347519 KDM2BQ8NHM5 1336 aa23.72■■□□□ 1.39
CHMP4A-201ENST00000347519 RFX5P48382 616 aaPredicted RBP23.71■■□□□ 1.39
CHMP4A-201ENST00000347519 ATF5Q9Y2D1 282 aaPredicted RBP23.71■■□□□ 1.39
CHMP4A-201ENST00000347519 COL4A1P02462 1669 aa23.71■■□□□ 1.39
CHMP4A-201ENST00000347519 TAF1P21675 1872 aa23.7■■□□□ 1.38
CHMP4A-201ENST00000347519 FAM161AQ3B820 660 aa23.7■■□□□ 1.38
CHMP4A-201ENST00000347519 RWDD1Q9H446 243 aaPredicted RBP23.7■■□□□ 1.38
CHMP4A-201ENST00000347519 CHMP3Q9Y3E7 222 aa23.7■■□□□ 1.38
CHMP4A-201ENST00000347519 NPHP1O15259 732 aa23.69■■□□□ 1.38
CHMP4A-201ENST00000347519 KLHDC4Q8TBB5 520 aa23.69■■□□□ 1.38
CHMP4A-201ENST00000347519 GREM2Q9H772 168 aa23.69■■□□□ 1.38
CHMP4A-201ENST00000347519 PA2G4Q9UQ80 394 aaKnown RBP23.69■■□□□ 1.38
CHMP4A-201ENST00000347519 RIC1Q4ADV7 1423 aa23.69■■□□□ 1.38
CHMP4A-201ENST00000347519 MTFR1LQ9H019 292 aa23.68■■□□□ 1.38
CHMP4A-201ENST00000347519 ST5P78524 1137 aa23.67■■□□□ 1.38
CHMP4A-201ENST00000347519 SF3B3Q15393 1217 aaKnown RBP23.67■■□□□ 1.38
CHMP4A-201ENST00000347519 HMMRO75330 724 aa23.66■■□□□ 1.38
CHMP4A-201ENST00000347519 ZNF594Q96JF6 807 aaPredicted RBP23.66■■□□□ 1.38
CHMP4A-201ENST00000347519 PTPN12Q05209 780 aaKnown RBP23.65■■□□□ 1.38
CHMP4A-201ENST00000347519 NLRP3Q96P20 1036 aa23.65■■□□□ 1.38
CHMP4A-201ENST00000347519 DCTPP1Q9H773 170 aa23.65■■□□□ 1.38
CHMP4A-201ENST00000347519 SEC31BQ9NQW1 1179 aa23.65■■□□□ 1.38
CHMP4A-201ENST00000347519 SPEF2Q9C093 1822 aa23.65■■□□□ 1.38
CHMP4A-201ENST00000347519 COL11A2P13942 1736 aaPredicted RBP23.65■■□□□ 1.38
CHMP4A-201ENST00000347519 HSP90B1P14625 803 aaKnown RBP23.65■■□□□ 1.38
CHMP4A-201ENST00000347519 EXOC6BQ9Y2D4 811 aa23.65■■□□□ 1.38
CHMP4A-201ENST00000347519 RTL9Q8NET4 1388 aa23.64■■□□□ 1.37
CHMP4A-201ENST00000347519 ITGA6P23229 1130 aa23.64■■□□□ 1.37
CHMP4A-201ENST00000347519 CCDC152Q4G0S7 254 aa23.64■■□□□ 1.37
CHMP4A-201ENST00000347519 SMC5Q8IY18 1101 aa23.64■■□□□ 1.37
CHMP4A-201ENST00000347519 SGIP1Q9BQI5 828 aa23.64■■□□□ 1.37
CHMP4A-201ENST00000347519 CENPQQ7L2Z9 268 aaPredicted RBP23.63■■□□□ 1.37
CHMP4A-201ENST00000347519 BRIP1Q9BX63 1249 aa23.63■■□□□ 1.37
CHMP4A-201ENST00000347519 COPRSQ9NQ92 184 aa23.63■■□□□ 1.37
CHMP4A-201ENST00000347519 SURF6O75683 361 aaKnown RBP23.62■■□□□ 1.37
CHMP4A-201ENST00000347519 IFIT5Q13325 482 aaKnown RBP23.62■■□□□ 1.37
CHMP4A-201ENST00000347519 CCDC57Q2TAC2 916 aa23.62■■□□□ 1.37
CHMP4A-201ENST00000347519 NOP58Q9Y2X3 529 aaKnown RBP23.62■■□□□ 1.37
CHMP4A-201ENST00000347519 ANKRD18BA2A2Z9 1011 aa23.61■■□□□ 1.37
CHMP4A-201ENST00000347519 KLRG2A4D1S0 409 aaPredicted RBP23.61■■□□□ 1.37
CHMP4A-201ENST00000347519 PTGER2P43116 358 aa23.61■■□□□ 1.37
CHMP4A-201ENST00000347519 PUS3Q9BZE2 481 aaKnown RBP23.61■■□□□ 1.37
CHMP4A-201ENST00000347519 SIL1Q9H173 461 aa23.61■■□□□ 1.37
CHMP4A-201ENST00000347519 C10orf71Q711Q0 1435 aa23.6■■□□□ 1.37
CHMP4A-201ENST00000347519 KIF13BQ9NQT8 1826 aa23.6■■□□□ 1.37
CHMP4A-201ENST00000347519 CRY2Q49AN0 593 aa23.6■■□□□ 1.37
CHMP4A-201ENST00000347519 APBB1O00213 710 aa23.59■■□□□ 1.37
CHMP4A-201ENST00000347519 LRRC24Q50LG9 513 aa23.59■■□□□ 1.37
CHMP4A-201ENST00000347519 SKAP1Q86WV1 359 aa23.58■■□□□ 1.37
CHMP4A-201ENST00000347519 CELF1Q92879 486 aaKnown RBP23.58■■□□□ 1.37
CHMP4A-201ENST00000347519 GCC1Q96CN9 775 aa23.58■■□□□ 1.37
CHMP4A-201ENST00000347519 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.58■■□□□ 1.37
CHMP4A-201ENST00000347519 SMARCA5O60264 1052 aaPredicted RBP23.57■■□□□ 1.36
CHMP4A-201ENST00000347519 POLD1P28340 1107 aa23.57■■□□□ 1.36
CHMP4A-201ENST00000347519 ATG9AQ7Z3C6 839 aa23.57■■□□□ 1.36
CHMP4A-201ENST00000347519 SASH1O94885 1247 aa23.56■■□□□ 1.36
CHMP4A-201ENST00000347519 TAF7LQ5H9L4 462 aa23.56■■□□□ 1.36
CHMP4A-201ENST00000347519 SLC51AQ86UW1 340 aa23.56■■□□□ 1.36
CHMP4A-201ENST00000347519 SPON1Q9HCB6 807 aa23.56■■□□□ 1.36
CHMP4A-201ENST00000347519 PDZRN3Q9UPQ7 1066 aa23.56■■□□□ 1.36
CHMP4A-201ENST00000347519 KIAA1551Q9HCM1 1747 aa23.56■■□□□ 1.36
CHMP4A-201ENST00000347519 EYA2O00167 538 aa23.55■■□□□ 1.36
CHMP4A-201ENST00000347519 PDE6BP35913 854 aa23.55■■□□□ 1.36
CHMP4A-201ENST00000347519 G3BP1Q13283 466 aaKnown RBP eCLIP23.55■■□□□ 1.36
CHMP4A-201ENST00000347519 CACNA1SQ13698 1873 aa23.54■■□□□ 1.36
CHMP4A-201ENST00000347519 SRGNP10124 158 aa23.54■■□□□ 1.36
CHMP4A-201ENST00000347519 CHRNA5P30532 468 aa23.54■■□□□ 1.36
CHMP4A-201ENST00000347519 HOXA10P31260 410 aaPredicted RBP23.54■■□□□ 1.36
CHMP4A-201ENST00000347519 ANKRD45Q5TZF3 282 aa23.54■■□□□ 1.36
CHMP4A-201ENST00000347519 DDX46Q7L014 1031 aaKnown RBP23.54■■□□□ 1.36
CHMP4A-201ENST00000347519 C2CD5Q86YS7 1000 aa23.54■■□□□ 1.36
CHMP4A-201ENST00000347519 RPGRQ92834 1020 aaKnown RBP23.54■■□□□ 1.36
CHMP4A-201ENST00000347519 A0A1B0GUL6 1792 aa23.54■■□□□ 1.36
CHMP4A-201ENST00000347519 NUCB1Q02818 461 aa23.53■■□□□ 1.36
CHMP4A-201ENST00000347519 OS9Q13438 667 aaPredicted RBP23.53■■□□□ 1.36
CHMP4A-201ENST00000347519 RIPOR2Q9Y4F9 1068 aa23.53■■□□□ 1.36
CHMP4A-201ENST00000347519 DLEC1Q9Y238 1755 aa23.53■■□□□ 1.36
CHMP4A-201ENST00000347519 RAB11FIP3O75154 756 aa23.52■■□□□ 1.36
CHMP4A-201ENST00000347519 LDHAL6AQ6ZMR3 332 aa23.52■■□□□ 1.36
CHMP4A-201ENST00000347519 RHPN1Q8TCX5 695 aa23.52■■□□□ 1.36
CHMP4A-201ENST00000347519 CDC5LQ99459 802 aaKnown RBP23.52■■□□□ 1.36
CHMP4A-201ENST00000347519 CIAO1O76071 339 aa23.52■■□□□ 1.36
CHMP4A-201ENST00000347519 RPS8P62241 208 aaKnown RBP23.52■■□□□ 1.36
CHMP4A-201ENST00000347519 GRAPQ13588 217 aa23.52■■□□□ 1.36
CHMP4A-201ENST00000347519 ANKRD18AQ8IVF6 992 aa23.52■■□□□ 1.36
CHMP4A-201ENST00000347519 GRAPLQ8TC17 118 aaPredicted RBP23.52■■□□□ 1.36
CHMP4A-201ENST00000347519 RBM17Q96I25 401 aaKnown RBP23.52■■□□□ 1.36
CHMP4A-201ENST00000347519 LNPKQ9C0E8 428 aa23.52■■□□□ 1.36
CHMP4A-201ENST00000347519 IL1RAPL2Q9NP60 686 aa23.52■■□□□ 1.36
CHMP4A-201ENST00000347519 NPR1P16066 1061 aa23.51■■□□□ 1.35
CHMP4A-201ENST00000347519 IGHMBP2P38935 993 aaKnown RBP23.51■■□□□ 1.35
CHMP4A-201ENST00000347519 TFCP2Q12800 502 aa23.51■■□□□ 1.35
CHMP4A-201ENST00000347519 HSP90AB4PQ58FF6 505 aa23.51■■□□□ 1.35
CHMP4A-201ENST00000347519 CRAMP1Q96RY5 1269 aa23.51■■□□□ 1.35
CHMP4A-201ENST00000347519 BCL11AQ9H165 835 aa23.51■■□□□ 1.35
CHMP4A-201ENST00000347519 CNNM1Q9NRU3 951 aa23.51■■□□□ 1.35
CHMP4A-201ENST00000347519 PDE4AP27815 886 aa23.5■■□□□ 1.35
CHMP4A-201ENST00000347519 IL15P40933 162 aaPredicted RBP23.5■■□□□ 1.35
CHMP4A-201ENST00000347519 CHD1LQ86WJ1 897 aa23.5■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms