RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 ZNF165P49910 485 aa26.47■■□□□ 1.83
TRIM28-202ENST00000341753 BLOC1S2Q6QNY1 142 aa26.47■■□□□ 1.83
TRIM28-202ENST00000341753 CACTINQ8WUQ7 758 aaKnown RBP26.47■■□□□ 1.83
TRIM28-202ENST00000341753 ADCY9O60503 1353 aa26.47■■□□□ 1.83
TRIM28-202ENST00000341753 ELP1O95163 1332 aa26.46■■□□□ 1.83
TRIM28-202ENST00000341753 MAP4K1Q92918 833 aa26.46■■□□□ 1.83
TRIM28-202ENST00000341753 PGBD1Q96JS3 809 aa26.46■■□□□ 1.83
TRIM28-202ENST00000341753 BOLA2Q9H3K6 86 aa26.46■■□□□ 1.83
TRIM28-202ENST00000341753 JAK2O60674 1132 aa26.46■■□□□ 1.83
TRIM28-202ENST00000341753 PLA2G4DQ86XP0 818 aa26.46■■□□□ 1.83
TRIM28-202ENST00000341753 CLIP2Q9UDT6 1046 aa26.46■■□□□ 1.83
TRIM28-202ENST00000341753 CEBPZQ03701 1054 aaKnown RBP26.45■■□□□ 1.83
TRIM28-202ENST00000341753 ARID5BQ14865 1188 aa26.45■■□□□ 1.83
TRIM28-202ENST00000341753 CLSTN2Q9H4D0 955 aa26.45■■□□□ 1.83
TRIM28-202ENST00000341753 TPD52L1Q16890 204 aaPredicted RBP26.45■■□□□ 1.82
TRIM28-202ENST00000341753 PDCP20941 246 aa26.45■■□□□ 1.82
TRIM28-202ENST00000341753 SLC39A6Q13433 755 aa26.45■■□□□ 1.82
TRIM28-202ENST00000341753 TOB2Q14106 344 aaPredicted RBP26.45■■□□□ 1.82
TRIM28-202ENST00000341753 CABLES1Q8TDN4 633 aa26.45■■□□□ 1.82
TRIM28-202ENST00000341753 SCAND2PQ9GZW5 306 aaPredicted RBP26.45■■□□□ 1.82
TRIM28-202ENST00000341753 SIL1Q9H173 461 aa26.45■■□□□ 1.82
TRIM28-202ENST00000341753 MAP3K2Q9Y2U5 619 aa26.45■■□□□ 1.82
TRIM28-202ENST00000341753 A0A087WWV3 80 aa26.44■■□□□ 1.82
TRIM28-202ENST00000341753 EAF2Q96CJ1 260 aaPredicted RBP26.44■■□□□ 1.82
TRIM28-202ENST00000341753 N4BP2Q86UW6 1770 aaPredicted RBP26.44■■□□□ 1.82
TRIM28-202ENST00000341753 FOSBP53539 338 aa26.44■■□□□ 1.82
TRIM28-202ENST00000341753 AIMP1Q12904 312 aaKnown RBP26.44■■□□□ 1.82
TRIM28-202ENST00000341753 FSD1Q9BTV5 496 aa26.44■■□□□ 1.82
TRIM28-202ENST00000341753 ZNF142P52746 1687 aaPredicted RBP26.43■■□□□ 1.82
TRIM28-202ENST00000341753 CACNA1FO60840 1977 aa26.43■■□□□ 1.82
TRIM28-202ENST00000341753 SMTNL1A8MU46 457 aa26.43■■□□□ 1.82
TRIM28-202ENST00000341753 PSMA5P28066 241 aa26.43■■□□□ 1.82
TRIM28-202ENST00000341753 NPHP3Q7Z494 1330 aa26.43■■□□□ 1.82
TRIM28-202ENST00000341753 CRYBG1Q9Y4K1 1723 aa26.43■■□□□ 1.82
TRIM28-202ENST00000341753 ZNF589Q86UQ0 364 aaPredicted RBP26.43■■□□□ 1.82
TRIM28-202ENST00000341753 EDC3Q96F86 508 aaKnown RBP26.43■■□□□ 1.82
TRIM28-202ENST00000341753 DDX19AQ9NUU7 478 aaKnown RBP26.43■■□□□ 1.82
TRIM28-202ENST00000341753 MED1Q15648 1581 aaPredicted RBP26.42■■□□□ 1.82
TRIM28-202ENST00000341753 RPS6KB1P23443 525 aa26.42■■□□□ 1.82
TRIM28-202ENST00000341753 GIGYF1O75420 1035 aaPredicted RBP26.42■■□□□ 1.82
TRIM28-202ENST00000341753 TDRD7Q8NHU6 1098 aaKnown RBP26.42■■□□□ 1.82
TRIM28-202ENST00000341753 AMOTQ4VCS5 1084 aa26.41■■□□□ 1.82
TRIM28-202ENST00000341753 USP27XA6NNY8 438 aa26.41■■□□□ 1.82
TRIM28-202ENST00000341753 SASH1O94885 1247 aa26.41■■□□□ 1.82
TRIM28-202ENST00000341753 CCDC112Q8NEF3 446 aa26.41■■□□□ 1.82
TRIM28-202ENST00000341753 KLHDC4Q8TBB5 520 aa26.41■■□□□ 1.82
TRIM28-202ENST00000341753 NLRP2Q9NX02 1062 aa26.4■■□□□ 1.82
TRIM28-202ENST00000341753 NOL12Q9UGY1 213 aaKnown RBP eCLIP26.4■■□□□ 1.823e-7■□□□□ 8
TRIM28-202ENST00000341753 V9GYY5 206 aaPredicted RBP26.4■■□□□ 1.82
TRIM28-202ENST00000341753 KLHL34Q8N239 644 aa26.4■■□□□ 1.82
TRIM28-202ENST00000341753 MTX1Q13505 466 aa26.39■■□□□ 1.81
TRIM28-202ENST00000341753 DBF4Q9UBU7 674 aaPredicted RBP26.39■■□□□ 1.81
TRIM28-202ENST00000341753 CTNNA3Q9UI47 895 aa26.39■■□□□ 1.81
TRIM28-202ENST00000341753 ADAMTSL3P82987 1691 aa26.39■■□□□ 1.81
TRIM28-202ENST00000341753 KDM3BQ7LBC6 1761 aa26.39■■□□□ 1.81
TRIM28-202ENST00000341753 C11orf57Q6ZUT1 292 aaPredicted RBP26.38■■□□□ 1.81
TRIM28-202ENST00000341753 BRF1Q92994 677 aa26.38■■□□□ 1.81
TRIM28-202ENST00000341753 PIP4K2AP48426 406 aaPredicted RBP26.38■■□□□ 1.81
TRIM28-202ENST00000341753 RBM43Q6ZSC3 357 aaKnown RBP26.38■■□□□ 1.81
TRIM28-202ENST00000341753 CHGBP05060 677 aa26.38■■□□□ 1.81
TRIM28-202ENST00000341753 CHRNA2Q15822 529 aa26.38■■□□□ 1.81
TRIM28-202ENST00000341753 FBXW7Q969H0 707 aa26.38■■□□□ 1.81
TRIM28-202ENST00000341753 SUCLG2Q96I99 432 aa26.38■■□□□ 1.81
TRIM28-202ENST00000341753 FTOQ9C0B1 505 aaKnown RBP eCLIP26.38■■□□□ 1.814e-6■■■□□ 17
TRIM28-202ENST00000341753 NDUFB9Q9Y6M9 179 aa26.38■■□□□ 1.81
TRIM28-202ENST00000341753 RNF20Q5VTR2 975 aa26.37■■□□□ 1.81
TRIM28-202ENST00000341753 ERC1Q8IUD2 1116 aa26.37■■□□□ 1.81
TRIM28-202ENST00000341753 PPFIA3O75145 1194 aa26.37■■□□□ 1.81
TRIM28-202ENST00000341753 HOXB7P09629 217 aa26.37■■□□□ 1.81
TRIM28-202ENST00000341753 ANKRD1Q15327 319 aa26.37■■□□□ 1.81
TRIM28-202ENST00000341753 LRRC2Q9BYS8 371 aa26.37■■□□□ 1.81
TRIM28-202ENST00000341753 OGFRQ9NZT2 677 aa26.37■■□□□ 1.81
TRIM28-202ENST00000341753 C1orf167Q5SNV9 1468 aa26.36■■□□□ 1.81
TRIM28-202ENST00000341753 KIF20AO95235 890 aa26.36■■□□□ 1.81
TRIM28-202ENST00000341753 CEP135Q66GS9 1140 aa26.36■■□□□ 1.81
TRIM28-202ENST00000341753 FEZ1Q99689 392 aa26.36■■□□□ 1.81
TRIM28-202ENST00000341753 BICC1Q9H694 974 aaKnown RBP26.36■■□□□ 1.81
TRIM28-202ENST00000341753 RGPD5Q99666 1765 aa26.36■■□□□ 1.81
TRIM28-202ENST00000341753 ERBB3P21860 1342 aa26.36■■□□□ 1.81
TRIM28-202ENST00000341753 A0A0U1RQG5 324 aaPredicted RBP26.36■■□□□ 1.81
TRIM28-202ENST00000341753 G3BP1Q13283 466 aaKnown RBP eCLIP26.36■■□□□ 1.814e-9■■□□□ 13
TRIM28-202ENST00000341753 ARHGAP30Q7Z6I6 1101 aaPredicted RBP26.36■■□□□ 1.81
TRIM28-202ENST00000341753 LMO7Q8WWI1 1683 aa26.35■■□□□ 1.81
TRIM28-202ENST00000341753 HSP90B1P14625 803 aaKnown RBP26.35■■□□□ 1.81
TRIM28-202ENST00000341753 ZNF771Q7L3S4 317 aaPredicted RBP26.35■■□□□ 1.81
TRIM28-202ENST00000341753 GOLGA6L19H0YKK7 550 aa26.35■■□□□ 1.81
TRIM28-202ENST00000341753 H3BQV1 296 aa26.35■■□□□ 1.81
TRIM28-202ENST00000341753 MYL6BP14649 208 aa26.35■■□□□ 1.81
TRIM28-202ENST00000341753 IFFO2Q5TF58 517 aa26.35■■□□□ 1.81
TRIM28-202ENST00000341753 C19orf44Q9H6X5 657 aa26.35■■□□□ 1.81
TRIM28-202ENST00000341753 TRMT1Q9NXH9 659 aaKnown RBP26.35■■□□□ 1.81
TRIM28-202ENST00000341753 SLIT3O75094 1523 aa26.35■■□□□ 1.81
TRIM28-202ENST00000341753 FILIP1Q7Z7B0 1213 aa26.34■■□□□ 1.81
TRIM28-202ENST00000341753 ERCC4Q92889 916 aaPredicted RBP26.34■■□□□ 1.81
TRIM28-202ENST00000341753 KAZALD1Q96I82 304 aa26.34■■□□□ 1.81
TRIM28-202ENST00000341753 USP16Q9Y5T5 823 aa26.34■■□□□ 1.81
TRIM28-202ENST00000341753 RESTQ13127 1097 aa26.34■■□□□ 1.81
TRIM28-202ENST00000341753 LRRC8AQ8IWT6 810 aa26.33■■□□□ 1.81
TRIM28-202ENST00000341753 PAXBP1Q9Y5B6 917 aa26.33■■□□□ 1.81
TRIM28-202ENST00000341753 HIP1O00291 1037 aa26.33■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 106.1 ms