RNA–Protein interactions for RNA: ENST00000341594.9

SYNE1-201, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene SYNE1, Length 26,584 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-201ENST00000341594 NAA25Q14CX7 972 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 ADAM33Q9BZ11 813 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 DDX19BQ9UMR2 479 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 MAP9Q49MG5 647 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 WDR66Q8TBY9 1149 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 ARHGEF40Q8TER5 1519 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 MPHOSPH9Q99550 1183 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 JAG2Q9Y219 1238 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 FIBPO43427 364 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 H3BQV1 296 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 STX17P56962 302 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 IFFO2Q5TF58 517 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 GAS2L2Q8NHY3 880 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 RPGRIP1Q96KN7 1286 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 MROH2AA6NES4 1674 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 hCG_2014768A0A024R1R8 64 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 ZHX3Q9H4I2 956 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 HP1BP3Q5SSJ5 553 aaPredicted RBP4.1□□□□□ -1.75
SYNE1-201ENST00000341594 FEZ2Q9UHY8 353 aaPredicted RBP4.1□□□□□ -1.75
SYNE1-201ENST00000341594 NDUFB9Q9Y6M9 179 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 LRRC7Q96NW7 1537 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 BACH1O14867 736 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 KCNV2Q8TDN2 545 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 SPATA32Q96LK8 384 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 LMAN1P49257 510 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 GCC1Q96CN9 775 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 SDF4Q9BRK5 362 aa4.1□□□□□ -1.75
SYNE1-201ENST00000341594 PLS1Q14651 629 aa4.09□□□□□ -1.75
SYNE1-201ENST00000341594 KIAA1328Q86T90 577 aa4.09□□□□□ -1.75
SYNE1-201ENST00000341594 HSP90B2PQ58FF3 399 aa4.09□□□□□ -1.75
SYNE1-201ENST00000341594 RPGRIP1LQ68CZ1 1315 aa4.09□□□□□ -1.75
SYNE1-201ENST00000341594 KCND1Q9NSA2 647 aa4.09□□□□□ -1.75
SYNE1-201ENST00000341594 TMF1P82094 1093 aa4.09□□□□□ -1.75
SYNE1-201ENST00000341594 TXLNBQ8N3L3 684 aa4.09□□□□□ -1.75
SYNE1-201ENST00000341594 MIPOL1Q8TD10 442 aa4.09□□□□□ -1.75
SYNE1-201ENST00000341594 LLGL2Q6P1M3 1020 aa4.09□□□□□ -1.75
SYNE1-201ENST00000341594 GGNBP2Q9H3C7 697 aa4.09□□□□□ -1.75
SYNE1-201ENST00000341594 DMRT2Q9Y5R5 561 aa4.09□□□□□ -1.75
SYNE1-201ENST00000341594 USH1CQ9Y6N9 552 aa4.09□□□□□ -1.75
SYNE1-201ENST00000341594 ARID1BQ8NFD5 2236 aaPredicted RBP4.09□□□□□ -1.75
SYNE1-201ENST00000341594 ZKSCAN2Q63HK3 967 aa4.09□□□□□ -1.75
SYNE1-201ENST00000341594 ISLR2Q6UXK2 745 aa4.09□□□□□ -1.75
SYNE1-201ENST00000341594 RUBCNQ92622 972 aa4.09□□□□□ -1.75
SYNE1-201ENST00000341594 TRIM66O15016 1216 aa4.09□□□□□ -1.75
SYNE1-201ENST00000341594 KIF22Q14807 665 aa4.09□□□□□ -1.75
SYNE1-201ENST00000341594 BMP2KLQ5H9B9 411 aa4.09□□□□□ -1.75
SYNE1-201ENST00000341594 HS6ST3Q8IZP7 471 aa4.09□□□□□ -1.75
SYNE1-201ENST00000341594 CCDC112Q8NEF3 446 aa4.09□□□□□ -1.75
SYNE1-201ENST00000341594 CHD5Q8TDI0 1954 aa4.09□□□□□ -1.75
SYNE1-201ENST00000341594 GRIN2BQ13224 1484 aa4.09□□□□□ -1.75
SYNE1-201ENST00000341594 KIAA0754O94854 1291 aa4.09□□□□□ -1.75
SYNE1-201ENST00000341594 ANKRD18AQ8IVF6 992 aa4.09□□□□□ -1.75
SYNE1-201ENST00000341594 CCDC8Q9H0W5 538 aaPredicted RBP4.09□□□□□ -1.75
SYNE1-201ENST00000341594 SCN10AQ9Y5Y9 1956 aa4.09□□□□□ -1.75
SYNE1-201ENST00000341594 SLC24A3Q9HC58 644 aa4.09□□□□□ -1.75
SYNE1-201ENST00000341594 GRIPAP1Q4V328 841 aa4.09□□□□□ -1.75
SYNE1-201ENST00000341594 UBXN4Q92575 508 aa4.09□□□□□ -1.75
SYNE1-201ENST00000341594 ZKSCAN5Q9Y2L8 839 aa4.09□□□□□ -1.75
SYNE1-201ENST00000341594 GSDMDP57764 484 aa4.09□□□□□ -1.75
SYNE1-201ENST00000341594 MKRN4PQ13434 485 aaPredicted RBP4.09□□□□□ -1.75
SYNE1-201ENST00000341594 C9orf84Q5VXU9 1444 aa4.09□□□□□ -1.75
SYNE1-201ENST00000341594 B4GALNT4Q76KP1 1039 aa4.09□□□□□ -1.75
SYNE1-201ENST00000341594 FAM200AQ8TCP9 573 aa4.09□□□□□ -1.75
SYNE1-201ENST00000341594 STAMQ92783 540 aa4.09□□□□□ -1.75
SYNE1-201ENST00000341594 SPG7Q9UQ90 795 aa4.09□□□□□ -1.75
SYNE1-201ENST00000341594 NSD3Q9BZ95 1437 aa4.09□□□□□ -1.75
SYNE1-201ENST00000341594 ALDH1L2Q3SY69 923 aa4.09□□□□□ -1.75
SYNE1-201ENST00000341594 TCHPQ9BT92 498 aa4.09□□□□□ -1.76
SYNE1-201ENST00000341594 SPAG9O60271 1321 aaKnown RBP4.09□□□□□ -1.76
SYNE1-201ENST00000341594 CEP170Q5SW79 1584 aa4.09□□□□□ -1.76
SYNE1-201ENST00000341594 TCF3P15923 654 aa4.09□□□□□ -1.76
SYNE1-201ENST00000341594 VPS41P49754 854 aa4.09□□□□□ -1.76
SYNE1-201ENST00000341594 FRMD4BQ9Y2L6 1034 aa4.09□□□□□ -1.76
SYNE1-201ENST00000341594 IGF1RP08069 1367 aa4.09□□□□□ -1.76
SYNE1-201ENST00000341594 CFAP74Q9C0B2 1584 aa4.09□□□□□ -1.76
SYNE1-201ENST00000341594 PTPRCP08575 1304 aa4.08□□□□□ -1.76
SYNE1-201ENST00000341594 RPAP2Q8IXW5 612 aaPredicted RBP4.08□□□□□ -1.76
SYNE1-201ENST00000341594 NEK11Q8NG66 645 aa4.08□□□□□ -1.76
SYNE1-201ENST00000341594 LRRFIP2Q9Y608 721 aaKnown RBP4.08□□□□□ -1.76
SYNE1-201ENST00000341594 MARCH6O60337 910 aa4.08□□□□□ -1.76
SYNE1-201ENST00000341594 LRCH2Q5VUJ6 765 aa4.08□□□□□ -1.76
SYNE1-201ENST00000341594 ANO1Q5XXA6 986 aa4.08□□□□□ -1.76
SYNE1-201ENST00000341594 TRIM35Q9UPQ4 493 aa4.08□□□□□ -1.76
SYNE1-201ENST00000341594 MCM6Q14566 821 aa4.08□□□□□ -1.76
SYNE1-201ENST00000341594 HEATR5AQ86XA9 2040 aa4.08□□□□□ -1.76
SYNE1-201ENST00000341594 MMP14P50281 582 aa4.08□□□□□ -1.76
SYNE1-201ENST00000341594 SAMM50Q9Y512 469 aa4.08□□□□□ -1.76
SYNE1-201ENST00000341594 MCM3APO60318 1980 aa4.08□□□□□ -1.76
SYNE1-201ENST00000341594 FER1L6Q2WGJ9 1857 aa4.08□□□□□ -1.76
SYNE1-201ENST00000341594 JDP2Q8WYK2 163 aa4.08□□□□□ -1.76
SYNE1-201ENST00000341594 DNAI2Q9GZS0 605 aa4.08□□□□□ -1.76
SYNE1-201ENST00000341594 USTQ9Y2C2 406 aa4.08□□□□□ -1.76
SYNE1-201ENST00000341594 TTC37Q6PGP7 1564 aa4.08□□□□□ -1.76
SYNE1-201ENST00000341594 AKAP11Q9UKA4 1901 aa4.08□□□□□ -1.76
SYNE1-201ENST00000341594 CDC25CP30307 473 aa4.08□□□□□ -1.76
SYNE1-201ENST00000341594 SETDB1Q15047 1291 aa4.08□□□□□ -1.76
SYNE1-201ENST00000341594 MYOM2P54296 1465 aa4.08□□□□□ -1.76
SYNE1-201ENST00000341594 STAG1Q8WVM7 1258 aa4.08□□□□□ -1.76
SYNE1-201ENST00000341594 EME2A4GXA9 379 aaPredicted RBP4.08□□□□□ -1.76
SYNE1-201ENST00000341594 CEP57Q86XR8 500 aa4.08□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms