RNA–Protein interactions for RNA: ENST00000321356.8

CLK1-201, Transcript of CDC like kinase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK1, Length 1,888 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-201ENST00000321356 RIC3Q7Z5B4 369 aa10.35□□□□□ -0.75
CLK1-201ENST00000321356 MTERF4Q7Z6M4 381 aaKnown RBP10.35□□□□□ -0.75
CLK1-201ENST00000321356 ORAI2Q96SN7 254 aa10.35□□□□□ -0.75
CLK1-201ENST00000321356 METTL22Q9BUU2 404 aaPredicted RBP10.35□□□□□ -0.75
CLK1-201ENST00000321356 SIL1Q9H173 461 aa10.35□□□□□ -0.75
CLK1-201ENST00000321356 FAM13BQ9NYF5 915 aa10.35□□□□□ -0.75
CLK1-201ENST00000321356 AFDNP55196 1824 aaKnown RBP10.35□□□□□ -0.75
CLK1-201ENST00000321356 ARFGEF2Q9Y6D5 1785 aa10.35□□□□□ -0.75
CLK1-201ENST00000321356 NPHP3Q7Z494 1330 aa10.35□□□□□ -0.75
CLK1-201ENST00000321356 GTF2F1P35269 517 aaKnown RBP eCLIP10.34□□□□□ -0.75
CLK1-201ENST00000321356 RFX5P48382 616 aaPredicted RBP10.34□□□□□ -0.75
CLK1-201ENST00000321356 NEXNQ0ZGT2 675 aa10.34□□□□□ -0.75
CLK1-201ENST00000321356 RBM43Q6ZSC3 357 aaKnown RBP10.34□□□□□ -0.75
CLK1-201ENST00000321356 KLHDC4Q8TBB5 520 aa10.34□□□□□ -0.75
CLK1-201ENST00000321356 SCAND2PQ9GZW5 306 aaPredicted RBP10.34□□□□□ -0.75
CLK1-201ENST00000321356 SLC52A2Q9HAB3 445 aa10.34□□□□□ -0.75
CLK1-201ENST00000321356 PLEKHG2Q9H7P9 1386 aa10.34□□□□□ -0.75
CLK1-201ENST00000321356 TPM3P06753 285 aa10.34□□□□□ -0.75
CLK1-201ENST00000321356 LIG1P18858 919 aa10.34□□□□□ -0.75
CLK1-201ENST00000321356 HMGN5P82970 282 aaKnown RBP10.34□□□□□ -0.75
CLK1-201ENST00000321356 KRT32Q14532 448 aa10.34□□□□□ -0.75
CLK1-201ENST00000321356 MAP3K11Q16584 847 aa10.34□□□□□ -0.75
CLK1-201ENST00000321356 RABL6Q3YEC7 729 aaPredicted RBP10.34□□□□□ -0.75
CLK1-201ENST00000321356 FERMT3Q86UX7 667 aa10.34□□□□□ -0.75
CLK1-201ENST00000321356 MPNDQ8N594 471 aa10.34□□□□□ -0.75
CLK1-201ENST00000321356 FAM200AQ8TCP9 573 aa10.34□□□□□ -0.75
CLK1-201ENST00000321356 XAGE3Q8WTP9 111 aa10.34□□□□□ -0.75
CLK1-201ENST00000321356 NUP62CLQ9H1M0 184 aa10.34□□□□□ -0.75
CLK1-201ENST00000321356 DBNLQ9UJU6 430 aaKnown RBP10.34□□□□□ -0.75
CLK1-201ENST00000321356 GLI3P10071 1580 aa10.33□□□□□ -0.76
CLK1-201ENST00000321356 ZNF609O15014 1411 aa10.33□□□□□ -0.76
CLK1-201ENST00000321356 PTPN12Q05209 780 aaKnown RBP10.33□□□□□ -0.76
CLK1-201ENST00000321356 TPRNQ4KMQ1 711 aa10.33□□□□□ -0.76
CLK1-201ENST00000321356 FAM173BQ6P4H8 233 aa10.33□□□□□ -0.76
CLK1-201ENST00000321356 KIAA1524Q8TCG1 905 aa10.33□□□□□ -0.76
CLK1-201ENST00000321356 TCEANC2Q96MN5 208 aa10.33□□□□□ -0.76
CLK1-201ENST00000321356 KCNF1Q9H3M0 494 aa10.33□□□□□ -0.76
CLK1-201ENST00000321356 MRVI1Q9Y6F6 885 aa10.33□□□□□ -0.76
CLK1-201ENST00000321356 COL18A1P39060 1754 aa10.33□□□□□ -0.76
CLK1-201ENST00000321356 MYH15Q9Y2K3 1946 aa10.32□□□□□ -0.76
CLK1-201ENST00000321356 TYRO3Q06418 890 aa10.32□□□□□ -0.76
CLK1-201ENST00000321356 SLC39A6Q13433 755 aa10.32□□□□□ -0.76
CLK1-201ENST00000321356 TNNI3KQ59H18 835 aa10.32□□□□□ -0.76
CLK1-201ENST00000321356 COPS6Q7L5N1 327 aa10.32□□□□□ -0.76
CLK1-201ENST00000321356 LEO1Q8WVC0 666 aaPredicted RBP10.32□□□□□ -0.76
CLK1-201ENST00000321356 GTF3C6Q969F1 213 aa10.32□□□□□ -0.76
CLK1-201ENST00000321356 EDC3Q96F86 508 aaKnown RBP10.32□□□□□ -0.76
CLK1-201ENST00000321356 MYD88Q99836 296 aa10.32□□□□□ -0.76
CLK1-201ENST00000321356 DDX19AQ9NUU7 478 aaKnown RBP10.32□□□□□ -0.76
CLK1-201ENST00000321356 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP10.32□□□□□ -0.765e-10■■□□□ 13.8
CLK1-201ENST00000321356 FPGT-TNNI3KV9GXZ4 949 aa10.32□□□□□ -0.76
CLK1-201ENST00000321356 LAMB4A4D0S4 1761 aa10.32□□□□□ -0.76
CLK1-201ENST00000321356 PKD1L3Q7Z443 1732 aa10.32□□□□□ -0.76
CLK1-201ENST00000321356 LAMA4Q16363 1823 aa10.32□□□□□ -0.76
CLK1-201ENST00000321356 PHKG2P15735 406 aa10.32□□□□□ -0.76
CLK1-201ENST00000321356 VSIG10Q8N0Z9 540 aa10.32□□□□□ -0.76
CLK1-201ENST00000321356 C17orf53Q8N3J3 647 aaPredicted RBP10.32□□□□□ -0.76
CLK1-201ENST00000321356 ZNF496Q96IT1 587 aaPredicted RBP10.32□□□□□ -0.76
CLK1-201ENST00000321356 SPATA32Q96LK8 384 aa10.32□□□□□ -0.76
CLK1-201ENST00000321356 CLSTN2Q9H4D0 955 aa10.32□□□□□ -0.76
CLK1-201ENST00000321356 DACT1Q9NYF0 836 aa10.32□□□□□ -0.76
CLK1-201ENST00000321356 U3KPZ7 1027 aaPredicted RBP10.32□□□□□ -0.76
CLK1-201ENST00000321356 MEGF6O75095 1541 aa10.31□□□□□ -0.76
CLK1-201ENST00000321356 MYL6BP14649 208 aa10.31□□□□□ -0.76
CLK1-201ENST00000321356 TFCP2Q12800 502 aa10.31□□□□□ -0.76
CLK1-201ENST00000321356 RESTQ13127 1097 aa10.31□□□□□ -0.76
CLK1-201ENST00000321356 ANKRD13DQ6ZTN6 518 aa10.31□□□□□ -0.76
CLK1-201ENST00000321356 KRT28Q7Z3Y7 464 aa10.31□□□□□ -0.76
CLK1-201ENST00000321356 RAPGEF4Q8WZA2 1011 aa10.31□□□□□ -0.76
CLK1-201ENST00000321356 NEK1Q96PY6 1258 aa10.31□□□□□ -0.76
CLK1-201ENST00000321356 HAUS7Q99871 368 aa10.31□□□□□ -0.76
CLK1-201ENST00000321356 C1orf167Q5SNV9 1468 aa10.3□□□□□ -0.76
CLK1-201ENST00000321356 PARP4Q9UKK3 1724 aaKnown RBP10.3□□□□□ -0.76
CLK1-201ENST00000321356 GOLGA6L6A8MZA4 724 aa10.3□□□□□ -0.76
CLK1-201ENST00000321356 CASP7P55210 303 aa10.3□□□□□ -0.76
CLK1-201ENST00000321356 DNTTIP2Q5QJE6 756 aaKnown RBP10.3□□□□□ -0.76
CLK1-201ENST00000321356 TICAM2Q86XR7 235 aa10.3□□□□□ -0.76
CLK1-201ENST00000321356 NFATC2IPQ8NCF5 419 aa10.3□□□□□ -0.76
CLK1-201ENST00000321356 PGBD1Q96JS3 809 aa10.3□□□□□ -0.76
CLK1-201ENST00000321356 TNMDQ9H2S6 317 aa10.3□□□□□ -0.76
CLK1-201ENST00000321356 PYCARDQ9ULZ3 195 aa10.3□□□□□ -0.76
CLK1-201ENST00000321356 ADAMTSL3P82987 1691 aa10.3□□□□□ -0.76
CLK1-201ENST00000321356 SH3TC1Q8TE82 1336 aa10.3□□□□□ -0.76
CLK1-201ENST00000321356 TMEM94Q12767 1356 aa10.3□□□□□ -0.76
CLK1-201ENST00000321356 PALLDQ8WX93 1383 aa10.3□□□□□ -0.76
CLK1-201ENST00000321356 JAK2O60674 1132 aa10.3□□□□□ -0.76
CLK1-201ENST00000321356 CYP21A2P08686 494 aa10.3□□□□□ -0.76
CLK1-201ENST00000321356 SNRPA1P09661 255 aaKnown RBP10.3□□□□□ -0.76
CLK1-201ENST00000321356 STK3Q13188 491 aa10.3□□□□□ -0.76
CLK1-201ENST00000321356 CAMK4Q16566 473 aa10.3□□□□□ -0.76
CLK1-201ENST00000321356 TDRD7Q8NHU6 1098 aaKnown RBP10.3□□□□□ -0.76
CLK1-201ENST00000321356 SMARCC2Q8TAQ2 1214 aa10.3□□□□□ -0.76
CLK1-201ENST00000321356 CBX8Q9HC52 389 aa10.3□□□□□ -0.76
CLK1-201ENST00000321356 TFIP11Q9UBB9 837 aaKnown RBP10.3□□□□□ -0.76
CLK1-201ENST00000321356 PLCB2Q00722 1185 aa10.29□□□□□ -0.76
CLK1-201ENST00000321356 MCMDC2Q4G0Z9 681 aa10.29□□□□□ -0.76
CLK1-201ENST00000321356 ANO6Q4KMQ2 910 aa10.29□□□□□ -0.76
CLK1-201ENST00000321356 LMOD2Q6P5Q4 547 aa10.29□□□□□ -0.76
CLK1-201ENST00000321356 BRF1Q92994 677 aa10.29□□□□□ -0.76
CLK1-201ENST00000321356 DBNDD2Q9BQY9 259 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 49.2 ms