RNA–Protein interactions for RNA: ENST00000308330.2

LEMD3-201, Transcript of LEM domain containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LEMD3, Length 4,764 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LEMD3-201ENST00000308330 CLIP2Q9UDT6 1046 aa17.6■□□□□ 0.41
LEMD3-201ENST00000308330 CAVIN4Q5BKX8 364 aa17.6■□□□□ 0.41
LEMD3-201ENST00000308330 SYT10Q6XYQ8 523 aa17.6■□□□□ 0.41
LEMD3-201ENST00000308330 ANKRD13DQ6ZTN6 518 aa17.6■□□□□ 0.41
LEMD3-201ENST00000308330 MAP3K2Q9Y2U5 619 aa17.6■□□□□ 0.41
LEMD3-201ENST00000308330 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP17.59■□□□□ 0.416e-6■■■■■ 38.2
LEMD3-201ENST00000308330 HDAC1Q13547 482 aaPredicted RBP17.59■□□□□ 0.41
LEMD3-201ENST00000308330 ZSCAN25Q6NSZ9 544 aa17.59■□□□□ 0.41
LEMD3-201ENST00000308330 MRFAP1Q9Y605 127 aa17.59■□□□□ 0.41
LEMD3-201ENST00000308330 ERBB4Q15303 1308 aa17.59■□□□□ 0.41
LEMD3-201ENST00000308330 MCM2P49736 904 aa17.59■□□□□ 0.41
LEMD3-201ENST00000308330 TNMDQ9H2S6 317 aa17.59■□□□□ 0.41
LEMD3-201ENST00000308330 TMOD2Q9NZR1 351 aa17.59■□□□□ 0.41
LEMD3-201ENST00000308330 KIF5BP33176 963 aa17.59■□□□□ 0.41
LEMD3-201ENST00000308330 C8orf34Q49A92 452 aa17.59■□□□□ 0.41
LEMD3-201ENST00000308330 CASTP20810 708 aaKnown RBP17.58■□□□□ 0.41
LEMD3-201ENST00000308330 MTHFSDQ2M296 383 aaKnown RBP17.58■□□□□ 0.41
LEMD3-201ENST00000308330 NBPF20Q3BBV1 942 aa17.58■□□□□ 0.41
LEMD3-201ENST00000308330 HOXC9P31274 260 aa17.58■□□□□ 0.4
LEMD3-201ENST00000308330 AKAP2Q9Y2D5 859 aa17.58■□□□□ 0.4
LEMD3-201ENST00000308330 SAMD9Q5K651 1589 aa17.58■□□□□ 0.4
LEMD3-201ENST00000308330 A0A1W2PP64 1363 aa17.58■□□□□ 0.4
LEMD3-201ENST00000308330 ANKRD18BA2A2Z9 1011 aa17.58■□□□□ 0.4
LEMD3-201ENST00000308330 KIF1BPQ96EK5 621 aa17.58■□□□□ 0.4
LEMD3-201ENST00000308330 IRX1P78414 480 aaPredicted RBP17.58■□□□□ 0.4
LEMD3-201ENST00000308330 PPP1R42Q7Z4L9 355 aa17.58■□□□□ 0.4
LEMD3-201ENST00000308330 JARID2Q92833 1246 aaPredicted RBP17.58■□□□□ 0.4
LEMD3-201ENST00000308330 WDR33Q9C0J8 1336 aaKnown RBP17.57■□□□□ 0.4
LEMD3-201ENST00000308330 PZPP20742 1482 aa17.57■□□□□ 0.4
LEMD3-201ENST00000308330 GUCY2CP25092 1073 aa17.57■□□□□ 0.4
LEMD3-201ENST00000308330 NEK4P51957 841 aa17.57■□□□□ 0.4
LEMD3-201ENST00000308330 MMS22LQ6ZRQ5 1243 aa17.57■□□□□ 0.4
LEMD3-201ENST00000308330 CCDC43Q96MW1 224 aaKnown RBP17.57■□□□□ 0.4
LEMD3-201ENST00000308330 TRIM6Q9C030 488 aaPredicted RBP17.57■□□□□ 0.4
LEMD3-201ENST00000308330 TFCP2L1Q9NZI6 479 aa17.57■□□□□ 0.4
LEMD3-201ENST00000308330 PIP4K2AP48426 406 aaPredicted RBP17.57■□□□□ 0.4
LEMD3-201ENST00000308330 CCDC181Q5TID7 509 aa17.57■□□□□ 0.4
LEMD3-201ENST00000308330 LDHAL6AQ6ZMR3 332 aa17.57■□□□□ 0.4
LEMD3-201ENST00000308330 COPS6Q7L5N1 327 aa17.57■□□□□ 0.4
LEMD3-201ENST00000308330 RBSNQ9H1K0 784 aa17.57■□□□□ 0.4
LEMD3-201ENST00000308330 MAPKBP1O60336 1514 aa17.57■□□□□ 0.4
LEMD3-201ENST00000308330 PPP1R12AO14974 1030 aaPredicted RBP17.57■□□□□ 0.4
LEMD3-201ENST00000308330 DDX46Q7L014 1031 aaKnown RBP17.57■□□□□ 0.4
LEMD3-201ENST00000308330 CHD1LQ86WJ1 897 aa17.57■□□□□ 0.4
LEMD3-201ENST00000308330 SH3GL3Q99963 347 aa17.57■□□□□ 0.4
LEMD3-201ENST00000308330 CWC25Q9NXE8 425 aaPredicted RBP17.57■□□□□ 0.4
LEMD3-201ENST00000308330 ABCC1P33527 1531 aa17.56■□□□□ 0.4
LEMD3-201ENST00000308330 XAGE3Q8WTP9 111 aa17.56■□□□□ 0.4
LEMD3-201ENST00000308330 SFPQP23246 707 aaKnown RBP eCLIP17.55■□□□□ 0.4
LEMD3-201ENST00000308330 SLC20A2Q08357 652 aa17.55■□□□□ 0.4
LEMD3-201ENST00000308330 CCDC50Q8IVM0 306 aa17.55■□□□□ 0.4
LEMD3-201ENST00000308330 MICAL1Q8TDZ2 1067 aa17.55■□□□□ 0.4
LEMD3-201ENST00000308330 RNF216Q9NWF9 866 aaPredicted RBP17.55■□□□□ 0.4
LEMD3-201ENST00000308330 FEZ2Q9UHY8 353 aaPredicted RBP17.55■□□□□ 0.4
LEMD3-201ENST00000308330 XBP1P17861 261 aa17.55■□□□□ 0.4
LEMD3-201ENST00000308330 ATP2B1P20020 1258 aa17.55■□□□□ 0.4
LEMD3-201ENST00000308330 MCM3P25205 808 aa17.55■□□□□ 0.4
LEMD3-201ENST00000308330 FAM98CQ17RN3 349 aaKnown RBP17.55■□□□□ 0.4
LEMD3-201ENST00000308330 CCDC114Q96M63 670 aa17.55■□□□□ 0.4
LEMD3-201ENST00000308330 ADGRL2O95490 1459 aa17.55■□□□□ 0.4
LEMD3-201ENST00000308330 DCAF5Q96JK2 942 aa17.55■□□□□ 0.4
LEMD3-201ENST00000308330 SETDB2Q96T68 719 aa17.55■□□□□ 0.4
LEMD3-201ENST00000308330 DNMT1P26358 1616 aaKnown RBP17.54■□□□□ 0.4
LEMD3-201ENST00000308330 ZSCAN12O43309 604 aa17.54■□□□□ 0.4
LEMD3-201ENST00000308330 CDC5LQ99459 802 aaKnown RBP17.54■□□□□ 0.4
LEMD3-201ENST00000308330 DONSONQ9NYP3 566 aa17.54■□□□□ 0.4
LEMD3-201ENST00000308330 OAS2P29728 719 aaKnown RBP17.54■□□□□ 0.4
LEMD3-201ENST00000308330 PSMD2Q13200 908 aa17.54■□□□□ 0.4
LEMD3-201ENST00000308330 NBPF9Q3BBW0 867 aa17.54■□□□□ 0.4
LEMD3-201ENST00000308330 LRRC23Q53EV4 343 aaPredicted RBP17.54■□□□□ 0.4
LEMD3-201ENST00000308330 ODF2Q5BJF6 829 aa17.54■□□□□ 0.4
LEMD3-201ENST00000308330 EP400NLQ6ZTU2 488 aa17.54■□□□□ 0.4
LEMD3-201ENST00000308330 CHPF2Q9P2E5 772 aa17.54■□□□□ 0.4
LEMD3-201ENST00000308330 MAGEA9P43362 315 aa17.53■□□□□ 0.4
LEMD3-201ENST00000308330 ELF2Q15723 593 aa17.53■□□□□ 0.4
LEMD3-201ENST00000308330 SIRT1Q96EB6 747 aa17.53■□□□□ 0.4
LEMD3-201ENST00000308330 NUP62CLQ9H1M0 184 aa17.53■□□□□ 0.4
LEMD3-201ENST00000308330 TMEM94Q12767 1356 aa17.53■□□□□ 0.4
LEMD3-201ENST00000308330 CFAP43Q8NDM7 1665 aa17.53■□□□□ 0.4
LEMD3-201ENST00000308330 ABCA8O94911 1581 aa17.53■□□□□ 0.4
LEMD3-201ENST00000308330 POLD1P28340 1107 aa17.53■□□□□ 0.4
LEMD3-201ENST00000308330 NBPF14Q5TI25 921 aa17.53■□□□□ 0.4
LEMD3-201ENST00000308330 C17orf53Q8N3J3 647 aaPredicted RBP17.53■□□□□ 0.4
LEMD3-201ENST00000308330 BOLA2Q9H3K6 86 aa17.53■□□□□ 0.4
LEMD3-201ENST00000308330 CCDC186Q7Z3E2 898 aa17.53■□□□□ 0.4
LEMD3-201ENST00000308330 N4BP2L2Q92802 583 aaPredicted RBP17.53■□□□□ 0.4
LEMD3-201ENST00000308330 USP21Q9UK80 565 aa17.53■□□□□ 0.4
LEMD3-201ENST00000308330 HCLS1P14317 486 aaPredicted RBP17.53■□□□□ 0.4
LEMD3-201ENST00000308330 CCDC8Q9H0W5 538 aaPredicted RBP17.53■□□□□ 0.4
LEMD3-201ENST00000308330 WWC3Q9ULE0 1092 aa17.53■□□□□ 0.4
LEMD3-201ENST00000308330 MAP3K11Q16584 847 aa17.52■□□□□ 0.4
LEMD3-201ENST00000308330 MSL1Q68DK7 614 aa17.52■□□□□ 0.4
LEMD3-201ENST00000308330 CWC27Q6UX04 472 aaKnown RBP17.52■□□□□ 0.4
LEMD3-201ENST00000308330 AIDAQ96BJ3 306 aa17.52■□□□□ 0.4
LEMD3-201ENST00000308330 ODF2LQ9ULJ1 636 aa17.52■□□□□ 0.4
LEMD3-201ENST00000308330 TRIM27P14373 513 aa17.52■□□□□ 0.4
LEMD3-201ENST00000308330 RTCBQ9Y3I0 505 aaKnown RBP17.52■□□□□ 0.4
LEMD3-201ENST00000308330 MBD5Q9P267 1494 aa17.52■□□□□ 0.4
LEMD3-201ENST00000308330 WHAMMP3Q1A5X7 153 aa17.52■□□□□ 0.4
LEMD3-201ENST00000308330 EFCAB13Q8IY85 973 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms