RNA–Protein interactions for RNA: ENST00000269397.8

CBX4-201, Transcript of chromobox 4, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene CBX4, Length 2,664 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4-201ENST00000269397 KDM3BQ7LBC6 1761 aa32.53■■■□□ 2.8
CBX4-201ENST00000269397 MED1Q15648 1581 aaPredicted RBP32.53■■■□□ 2.8
CBX4-201ENST00000269397 ZNF75DP51815 510 aa32.53■■■□□ 2.8
CBX4-201ENST00000269397 ZNF165P49910 485 aa32.52■■■□□ 2.8
CBX4-201ENST00000269397 DDX19AQ9NUU7 478 aaKnown RBP32.52■■■□□ 2.8
CBX4-201ENST00000269397 RNMTO43148 476 aaKnown RBP32.51■■■□□ 2.8
CBX4-201ENST00000269397 FOSBP53539 338 aa32.51■■■□□ 2.8
CBX4-201ENST00000269397 ZSCAN25Q6NSZ9 544 aa32.51■■■□□ 2.79
CBX4-201ENST00000269397 DMTNQ08495 405 aa32.5■■■□□ 2.79
CBX4-201ENST00000269397 LINS1Q8NG48 757 aa32.5■■■□□ 2.79
CBX4-201ENST00000269397 LTN1O94822 1766 aa32.5■■■□□ 2.79
CBX4-201ENST00000269397 BRF1Q92994 677 aa32.5■■■□□ 2.79
CBX4-201ENST00000269397 PLEKHO1Q53GL0 409 aaPredicted RBP32.49■■■□□ 2.79
CBX4-201ENST00000269397 PLA2G4DQ86XP0 818 aa32.49■■■□□ 2.79
CBX4-201ENST00000269397 LRRC2Q9BYS8 371 aa32.49■■■□□ 2.79
CBX4-201ENST00000269397 MED23Q9ULK4 1368 aa32.49■■■□□ 2.79
CBX4-201ENST00000269397 C1orf141Q5JVX7 400 aa32.48■■■□□ 2.79
CBX4-201ENST00000269397 ANKRD7Q92527 254 aa32.48■■■□□ 2.79
CBX4-201ENST00000269397 CTIFO43310 598 aaKnown RBP32.48■■■□□ 2.79
CBX4-201ENST00000269397 TAF5LO75529 589 aa32.48■■■□□ 2.79
CBX4-201ENST00000269397 CCDC129Q6ZRS4 1044 aa32.48■■■□□ 2.79
CBX4-201ENST00000269397 CCDC144BQ3MJ40 725 aa32.47■■■□□ 2.79
CBX4-201ENST00000269397 CCDC144CPQ8IYA2 1237 aa32.47■■■□□ 2.79
CBX4-201ENST00000269397 SNRKQ9NRH2 765 aa32.47■■■□□ 2.79
CBX4-201ENST00000269397 CLIP2Q9UDT6 1046 aa32.47■■■□□ 2.79
CBX4-201ENST00000269397 HSP90B1P14625 803 aaKnown RBP32.47■■■□□ 2.79
CBX4-201ENST00000269397 CACTINQ8WUQ7 758 aaKnown RBP32.47■■■□□ 2.79
CBX4-201ENST00000269397 PHF8Q9UPP1 1060 aa32.47■■■□□ 2.79
CBX4-201ENST00000269397 RGPD2P0DJD1 1756 aa32.47■■■□□ 2.79
CBX4-201ENST00000269397 CHD2O14647 1828 aaKnown RBP32.47■■■□□ 2.79
CBX4-201ENST00000269397 PXDNQ92626 1479 aa32.47■■■□□ 2.79
CBX4-201ENST00000269397 NAA30Q147X3 362 aaPredicted RBP32.46■■■□□ 2.79
CBX4-201ENST00000269397 RBM43Q6ZSC3 357 aaKnown RBP32.46■■■□□ 2.79
CBX4-201ENST00000269397 TDRD7Q8NHU6 1098 aaKnown RBP32.46■■■□□ 2.79
CBX4-201ENST00000269397 COL15A1P39059 1388 aa32.46■■■□□ 2.79
CBX4-201ENST00000269397 A0A087WWV3 80 aa32.45■■■□□ 2.79
CBX4-201ENST00000269397 IGKV5-2P06315 115 aa32.45■■■□□ 2.79
CBX4-201ENST00000269397 EPHA10Q5JZY3 1008 aa32.45■■■□□ 2.79
CBX4-201ENST00000269397 SEC62Q99442 399 aaKnown RBP32.45■■■□□ 2.79
CBX4-201ENST00000269397 HDAC5Q9UQL6 1122 aa32.45■■■□□ 2.79
CBX4-201ENST00000269397 H3BQV1 296 aa32.45■■■□□ 2.79
CBX4-201ENST00000269397 TNNT1P13805 278 aa32.45■■■□□ 2.79
CBX4-201ENST00000269397 IFFO2Q5TF58 517 aa32.45■■■□□ 2.79
CBX4-201ENST00000269397 PPFIA3O75145 1194 aa32.44■■■□□ 2.78
CBX4-201ENST00000269397 PDIA4P13667 645 aaKnown RBP32.44■■■□□ 2.78
CBX4-201ENST00000269397 Q6ZUG5 572 aa32.44■■■□□ 2.78
CBX4-201ENST00000269397 GTF3C6Q969F1 213 aa32.44■■■□□ 2.78
CBX4-201ENST00000269397 FTOQ9C0B1 505 aaKnown RBP eCLIP32.44■■■□□ 2.789e-12■■■■■ 29.8
CBX4-201ENST00000269397 ANKARQ7Z5J8 1434 aa32.44■■■□□ 2.78
CBX4-201ENST00000269397 MYL6BP14649 208 aa32.44■■■□□ 2.78
CBX4-201ENST00000269397 RESTQ13127 1097 aa32.44■■■□□ 2.78
CBX4-201ENST00000269397 RIC3Q7Z5B4 369 aa32.44■■■□□ 2.78
CBX4-201ENST00000269397 NCBP1Q09161 790 aaKnown RBP32.44■■■□□ 2.78
CBX4-201ENST00000269397 CCDC9Q9Y3X0 531 aaKnown RBP32.44■■■□□ 2.78
CBX4-201ENST00000269397 ARID5BQ14865 1188 aa32.43■■■□□ 2.78
CBX4-201ENST00000269397 NEK1Q96PY6 1258 aa32.43■■■□□ 2.78
CBX4-201ENST00000269397 HMG20BQ9P0W2 317 aa32.42■■■□□ 2.78
CBX4-201ENST00000269397 IGSF3O75054 1194 aa32.41■■■□□ 2.78
CBX4-201ENST00000269397 ZNF592Q92610 1267 aa32.41■■■□□ 2.78
CBX4-201ENST00000269397 ALDH8A1Q9H2A2 487 aaPredicted RBP32.41■■■□□ 2.78
CBX4-201ENST00000269397 TPD52L1Q16890 204 aaPredicted RBP32.41■■■□□ 2.78
CBX4-201ENST00000269397 C11orf57Q6ZUT1 292 aaPredicted RBP32.41■■■□□ 2.78
CBX4-201ENST00000269397 DNAJC2Q99543 621 aaKnown RBP32.41■■■□□ 2.78
CBX4-201ENST00000269397 DDX58O95786 925 aaKnown RBP32.4■■■□□ 2.78
CBX4-201ENST00000269397 SLC39A6Q13433 755 aa32.4■■■□□ 2.78
CBX4-201ENST00000269397 DBNLQ9UJU6 430 aaKnown RBP32.39■■■□□ 2.78
CBX4-201ENST00000269397 UTYO14607 1347 aa32.39■■■□□ 2.78
CBX4-201ENST00000269397 PSME1Q06323 249 aa32.39■■■□□ 2.78
CBX4-201ENST00000269397 PDIA6Q15084 440 aa32.39■■■□□ 2.78
CBX4-201ENST00000269397 FGD1P98174 961 aa32.38■■■□□ 2.77
CBX4-201ENST00000269397 TSGA10IPQ3SY00 556 aa32.38■■■□□ 2.77
CBX4-201ENST00000269397 UTP14CQ5TAP6 766 aaKnown RBP32.38■■■□□ 2.77
CBX4-201ENST00000269397 DDX21Q9NR30 783 aaKnown RBP eCLIP32.38■■■□□ 2.77
CBX4-201ENST00000269397 CYP21A2P08686 494 aa32.37■■■□□ 2.77
CBX4-201ENST00000269397 PIP4K2AP48426 406 aaPredicted RBP32.37■■■□□ 2.77
CBX4-201ENST00000269397 SCRN1Q12765 414 aa32.37■■■□□ 2.77
CBX4-201ENST00000269397 ARHGAP30Q7Z6I6 1101 aaPredicted RBP32.37■■■□□ 2.77
CBX4-201ENST00000269397 ADGRL3Q9HAR2 1447 aa32.37■■■□□ 2.77
CBX4-201ENST00000269397 SMTNL1A8MU46 457 aa32.37■■■□□ 2.77
CBX4-201ENST00000269397 FBXW7Q969H0 707 aa32.37■■■□□ 2.77
CBX4-201ENST00000269397 GOLGA6L19H0YKK7 550 aa32.36■■■□□ 2.77
CBX4-201ENST00000269397 AMOTQ4VCS5 1084 aa32.36■■■□□ 2.77
CBX4-201ENST00000269397 ERCC4Q92889 916 aaPredicted RBP32.36■■■□□ 2.77
CBX4-201ENST00000269397 MYD88Q99836 296 aa32.36■■■□□ 2.77
CBX4-201ENST00000269397 TFCP2Q12800 502 aa32.36■■■□□ 2.77
CBX4-201ENST00000269397 USPL1Q5W0Q7 1092 aa32.36■■■□□ 2.77
CBX4-201ENST00000269397 USP27XA6NNY8 438 aa32.35■■■□□ 2.77
CBX4-201ENST00000269397 SLFNL1Q499Z3 407 aa32.35■■■□□ 2.77
CBX4-201ENST00000269397 NEURL1BA8MQ27 555 aa32.35■■■□□ 2.77
CBX4-201ENST00000269397 IQCB1Q15051 598 aa32.35■■■□□ 2.77
CBX4-201ENST00000269397 ESCO1Q5FWF5 840 aa32.35■■■□□ 2.77
CBX4-201ENST00000269397 HEG1Q9ULI3 1381 aa32.35■■■□□ 2.77
CBX4-201ENST00000269397 KRT32Q14532 448 aa32.34■■■□□ 2.77
CBX4-201ENST00000269397 LMOD2Q6P5Q4 547 aa32.34■■■□□ 2.77
CBX4-201ENST00000269397 DDX46Q7L014 1031 aaKnown RBP32.34■■■□□ 2.77
CBX4-201ENST00000269397 JCADQ9P266 1359 aa32.34■■■□□ 2.77
CBX4-201ENST00000269397 NFAT5O94916 1531 aa32.34■■■□□ 2.77
CBX4-201ENST00000269397 LMO7Q8WWI1 1683 aa32.34■■■□□ 2.77
CBX4-201ENST00000269397 GOLPH3LQ9H4A5 285 aa32.34■■■□□ 2.77
CBX4-201ENST00000269397 CCAR1Q8IX12 1150 aaKnown RBP32.34■■■□□ 2.77
Retrieved 100 of 20,778 RNA–protein pairs in 11.9 ms