RNA–Protein interactions for RNA: ENST00000193403.10

ACTN1-201, Transcript of actinin alpha 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ACTN1, Length 3,779 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ACTN1-201ENST00000193403 STX1AQ16623 288 aa13.1□□□□□ -0.31
ACTN1-201ENST00000193403 LGR6Q9HBX8 967 aa13.1□□□□□ -0.31
ACTN1-201ENST00000193403 SSH2Q76I76 1423 aa13.1□□□□□ -0.31
ACTN1-201ENST00000193403 TTLL5Q6EMB2 1281 aa13.1□□□□□ -0.31
ACTN1-201ENST00000193403 NEK1Q96PY6 1258 aa13.1□□□□□ -0.31
ACTN1-201ENST00000193403 DIP2CQ9Y2E4 1556 aa13.1□□□□□ -0.31
ACTN1-201ENST00000193403 SERPINC1P01008 464 aa13.09□□□□□ -0.31
ACTN1-201ENST00000193403 PIP4K2BP78356 416 aa13.09□□□□□ -0.31
ACTN1-201ENST00000193403 PTPN21Q16825 1174 aa13.09□□□□□ -0.31
ACTN1-201ENST00000193403 SKIDA1Q1XH10 827 aa13.09□□□□□ -0.31
ACTN1-201ENST00000193403 NCOA5Q9HCD5 579 aaKnown RBP13.09□□□□□ -0.31
ACTN1-201ENST00000193403 CD163L1Q9NR16 1453 aa13.09□□□□□ -0.31
ACTN1-201ENST00000193403 DDX58O95786 925 aaKnown RBP13.09□□□□□ -0.31
ACTN1-201ENST00000193403 WASHC4Q2M389 1173 aa13.09□□□□□ -0.31
ACTN1-201ENST00000193403 SYNE3Q6ZMZ3 975 aa13.09□□□□□ -0.31
ACTN1-201ENST00000193403 C11orf57Q6ZUT1 292 aaPredicted RBP13.09□□□□□ -0.31
ACTN1-201ENST00000193403 UBXN4Q92575 508 aa13.09□□□□□ -0.31
ACTN1-201ENST00000193403 ANO10Q9NW15 660 aa13.09□□□□□ -0.31
ACTN1-201ENST00000193403 TLR7Q9NYK1 1049 aaKnown RBP13.09□□□□□ -0.31
ACTN1-201ENST00000193403 OTUD7BQ6GQQ9 843 aa13.09□□□□□ -0.31
ACTN1-201ENST00000193403 ZSWIM4Q9H7M6 989 aa13.09□□□□□ -0.31
ACTN1-201ENST00000193403 LMOD1P29536 600 aaPredicted RBP13.08□□□□□ -0.31
ACTN1-201ENST00000193403 TTC5Q8N0Z6 440 aa13.08□□□□□ -0.31
ACTN1-201ENST00000193403 ZNF397Q8NF99 534 aaPredicted RBP13.08□□□□□ -0.31
ACTN1-201ENST00000193403 ZSWIM6Q9HCJ5 1215 aa13.08□□□□□ -0.31
ACTN1-201ENST00000193403 ST7Q9NRC1 585 aa13.08□□□□□ -0.31
ACTN1-201ENST00000193403 DNAI1Q9UI46 699 aa13.08□□□□□ -0.31
ACTN1-201ENST00000193403 A0A1B0GVL5 298 aa13.08□□□□□ -0.32
ACTN1-201ENST00000193403 ARGLU1Q9NWB6 273 aaPredicted RBP13.08□□□□□ -0.32
ACTN1-201ENST00000193403 ZC3H13Q5T200 1668 aaKnown RBP13.08□□□□□ -0.32
ACTN1-201ENST00000193403 ATF3P18847 181 aa13.08□□□□□ -0.32
ACTN1-201ENST00000193403 APOBRQ0VD83 1088 aa13.08□□□□□ -0.32
ACTN1-201ENST00000193403 ERCC6LQ2NKX8 1250 aa13.08□□□□□ -0.32
ACTN1-201ENST00000193403 ZNF396Q96N95 335 aaPredicted RBP13.08□□□□□ -0.32
ACTN1-201ENST00000193403 TAF6LQ9Y6J9 622 aa13.08□□□□□ -0.32
ACTN1-201ENST00000193403 SLU7O95391 586 aaKnown RBP13.07□□□□□ -0.32
ACTN1-201ENST00000193403 CFAP100Q494V2 611 aa13.07□□□□□ -0.32
ACTN1-201ENST00000193403 SEC62Q99442 399 aaKnown RBP13.07□□□□□ -0.32
ACTN1-201ENST00000193403 NOL10Q9BSC4 688 aaKnown RBP13.07□□□□□ -0.32
ACTN1-201ENST00000193403 PTPRMP28827 1452 aa13.07□□□□□ -0.32
ACTN1-201ENST00000193403 CDK12Q9NYV4 1490 aaPredicted RBP13.07□□□□□ -0.32
ACTN1-201ENST00000193403 RPS6KB1P23443 525 aa13.07□□□□□ -0.32
ACTN1-201ENST00000193403 HAND2P61296 217 aa13.07□□□□□ -0.32
ACTN1-201ENST00000193403 TEX35Q5T0J7 233 aa13.07□□□□□ -0.32
ACTN1-201ENST00000193403 IFNKQ9P0W0 207 aa13.07□□□□□ -0.32
ACTN1-201ENST00000193403 COL9A3Q14050 684 aaPredicted RBP13.07□□□□□ -0.32
ACTN1-201ENST00000193403 ARHGAP29Q52LW3 1261 aa13.07□□□□□ -0.32
ACTN1-201ENST00000193403 LRRC59Q96AG4 307 aaKnown RBP13.07□□□□□ -0.32
ACTN1-201ENST00000193403 EAF2Q96CJ1 260 aaPredicted RBP13.07□□□□□ -0.32
ACTN1-201ENST00000193403 ORAI2Q96SN7 254 aa13.07□□□□□ -0.32
ACTN1-201ENST00000193403 CPSF1Q10570 1443 aaKnown RBP13.07□□□□□ -0.32
ACTN1-201ENST00000193403 TTC41PQ6P2S7 1318 aa13.07□□□□□ -0.32
ACTN1-201ENST00000193403 PLCD3Q8N3E9 789 aa13.06□□□□□ -0.32
ACTN1-201ENST00000193403 CABLES1Q8TDN4 633 aa13.06□□□□□ -0.32
ACTN1-201ENST00000193403 BICC1Q9H694 974 aaKnown RBP13.06□□□□□ -0.32
ACTN1-201ENST00000193403 INO80Q9ULG1 1556 aaPredicted RBP13.06□□□□□ -0.32
ACTN1-201ENST00000193403 ZNF589Q86UQ0 364 aaPredicted RBP13.06□□□□□ -0.32
ACTN1-201ENST00000193403 LRRC8AQ8IWT6 810 aa13.06□□□□□ -0.32
ACTN1-201ENST00000193403 ARAP3Q8WWN8 1544 aa13.06□□□□□ -0.32
ACTN1-201ENST00000193403 AOX1Q06278 1338 aa13.06□□□□□ -0.32
ACTN1-201ENST00000193403 ATP5J2-PTCD1G3V325 749 aa13.06□□□□□ -0.32
ACTN1-201ENST00000193403 PTCD1O75127 700 aaKnown RBP13.06□□□□□ -0.32
ACTN1-201ENST00000193403 SLC39A6Q13433 755 aa13.06□□□□□ -0.32
ACTN1-201ENST00000193403 TMCO3Q6UWJ1 677 aa13.06□□□□□ -0.32
ACTN1-201ENST00000193403 MYD88Q99836 296 aa13.06□□□□□ -0.32
ACTN1-201ENST00000193403 CHMP4AQ9BY43 222 aa13.06□□□□□ -0.32
ACTN1-201ENST00000193403 FRMPD1Q5SYB0 1578 aa13.06□□□□□ -0.32
ACTN1-201ENST00000193403 DBF4Q9UBU7 674 aaPredicted RBP13.05□□□□□ -0.32
ACTN1-201ENST00000193403 AATKQ6ZMQ8 1374 aa13.05□□□□□ -0.32
ACTN1-201ENST00000193403 CHGBP05060 677 aa13.05□□□□□ -0.32
ACTN1-201ENST00000193403 RAPGEF4Q8WZA2 1011 aa13.05□□□□□ -0.32
ACTN1-201ENST00000193403 PGBD1Q96JS3 809 aa13.05□□□□□ -0.32
ACTN1-201ENST00000193403 FLT4P35916 1363 aa13.05□□□□□ -0.32
ACTN1-201ENST00000193403 TCHHQ07283 1943 aa13.05□□□□□ -0.32
ACTN1-201ENST00000193403 FUCA2Q9BTY2 467 aa13.05□□□□□ -0.32
ACTN1-201ENST00000193403 CTNNA3Q9UI47 895 aa13.05□□□□□ -0.32
ACTN1-201ENST00000193403 SALL3Q9BXA9 1300 aa13.05□□□□□ -0.32
ACTN1-201ENST00000193403 PTPDC1A2A3K4 754 aa13.04□□□□□ -0.32
ACTN1-201ENST00000193403 GOLIM4O00461 696 aa13.04□□□□□ -0.32
ACTN1-201ENST00000193403 KRT32Q14532 448 aa13.04□□□□□ -0.32
ACTN1-201ENST00000193403 FBXO38Q6PIJ6 1188 aa13.04□□□□□ -0.32
ACTN1-201ENST00000193403 CCDC34Q96HJ3 373 aa13.04□□□□□ -0.32
ACTN1-201ENST00000193403 MYO3AQ8NEV4 1616 aa13.04□□□□□ -0.32
ACTN1-201ENST00000193403 TMEM2Q9UHN6 1383 aa13.04□□□□□ -0.32
ACTN1-201ENST00000193403 FKBP4Q02790 459 aaKnown RBP eCLIP13.04□□□□□ -0.32
ACTN1-201ENST00000193403 PROSER3Q2NL68 480 aa13.04□□□□□ -0.32
ACTN1-201ENST00000193403 PRAMEF22A3QJZ6 481 aa13.04□□□□□ -0.32
ACTN1-201ENST00000193403 MARCKSP29966 332 aaPredicted RBP13.04□□□□□ -0.32
ACTN1-201ENST00000193403 SUCLG2Q96I99 432 aa13.04□□□□□ -0.32
ACTN1-201ENST00000193403 TIGD1Q96MW7 591 aa13.04□□□□□ -0.32
ACTN1-201ENST00000193403 USP28Q96RU2 1077 aa13.04□□□□□ -0.32
ACTN1-201ENST00000193403 MAP3K5Q99683 1374 aa13.03□□□□□ -0.32
ACTN1-201ENST00000193403 PES1O00541 588 aaKnown RBP13.03□□□□□ -0.32
ACTN1-201ENST00000193403 VWDEQ8N2E2 1590 aa13.03□□□□□ -0.32
ACTN1-201ENST00000193403 SNRKQ9NRH2 765 aa13.03□□□□□ -0.32
ACTN1-201ENST00000193403 ATP7BP35670 1465 aa13.03□□□□□ -0.32
ACTN1-201ENST00000193403 GRM8O00222 908 aa13.03□□□□□ -0.32
ACTN1-201ENST00000193403 KMT5BQ4FZB7 885 aa13.03□□□□□ -0.32
ACTN1-201ENST00000193403 HSP90AB3PQ58FF7 597 aa13.03□□□□□ -0.32
ACTN1-201ENST00000193403 BEND3Q5T5X7 828 aa13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 88.1 ms