RNA–Protein interactions for RNA: ENST00000224237.9

VIM-201, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIM, Length 1,868 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-201ENST00000224237 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP16.52■□□□□ 0.23
VIM-201ENST00000224237 YARS2Q9Y2Z4 477 aaKnown RBP16.52■□□□□ 0.23
VIM-201ENST00000224237 ANKUB1A6NFN9 424 aa16.51■□□□□ 0.23
VIM-201ENST00000224237 KDM4EB2RXH2 506 aaPredicted RBP16.51■□□□□ 0.23
VIM-201ENST00000224237 CXCR1P25024 350 aa16.51■□□□□ 0.23
VIM-201ENST00000224237 ST13P50502 369 aaKnown RBP16.51■□□□□ 0.23
VIM-201ENST00000224237 MLLT10P55197 1068 aa16.51■□□□□ 0.23
VIM-201ENST00000224237 EGR4Q05215 589 aa16.51■□□□□ 0.23
VIM-201ENST00000224237 FHL1Q13642 323 aa16.51■□□□□ 0.23
VIM-201ENST00000224237 SYT6Q5T7P8 510 aaPredicted RBP16.51■□□□□ 0.23
VIM-201ENST00000224237 OPN5Q6U736 354 aa16.51■□□□□ 0.23
VIM-201ENST00000224237 GRINAQ7Z429 371 aa16.51■□□□□ 0.23
VIM-201ENST00000224237 LIPHQ8WWY8 451 aa16.51■□□□□ 0.23
VIM-201ENST00000224237 TMEM234Q8WY98 164 aa16.51■□□□□ 0.23
VIM-201ENST00000224237 RFKQ969G6 155 aa16.51■□□□□ 0.23
VIM-201ENST00000224237 CDCA4Q9BXL8 241 aa16.51■□□□□ 0.23
VIM-201ENST00000224237 ENKD1Q9H0I2 346 aa16.51■□□□□ 0.23
VIM-201ENST00000224237 FN3KQ9H479 309 aa16.51■□□□□ 0.23
VIM-201ENST00000224237 METTL7AQ9H8H3 244 aa16.51■□□□□ 0.23
VIM-201ENST00000224237 SDHAF3Q9NRP4 125 aa16.51■□□□□ 0.23
VIM-201ENST00000224237 PCDHGB6Q9Y5F9 930 aa16.51■□□□□ 0.23
VIM-201ENST00000224237 TP53I11O14683 189 aa16.5■□□□□ 0.23
VIM-201ENST00000224237 NDUFB2O95178 105 aa16.5■□□□□ 0.23
VIM-201ENST00000224237 HPP00738 406 aa16.5■□□□□ 0.23
VIM-201ENST00000224237 DLSTP36957 453 aa16.5■□□□□ 0.23
VIM-201ENST00000224237 SOX3P41225 446 aa16.5■□□□□ 0.23
VIM-201ENST00000224237 HTR3AP46098 478 aa16.5■□□□□ 0.23
VIM-201ENST00000224237 POLR2HP52434 150 aaKnown RBP16.5■□□□□ 0.23
VIM-201ENST00000224237 GP2P55259 537 aaKnown RBP16.5■□□□□ 0.23
VIM-201ENST00000224237 ZNF74Q16587 644 aa16.5■□□□□ 0.23
VIM-201ENST00000224237 ZNF791Q3KP31 576 aaPredicted RBP16.5■□□□□ 0.23
VIM-201ENST00000224237 UBE2UQ5VVX9 321 aa16.5■□□□□ 0.23
VIM-201ENST00000224237 GPR107Q5VW38 600 aa16.5■□□□□ 0.23
VIM-201ENST00000224237 DND1Q8IYX4 353 aaKnown RBP16.5■□□□□ 0.23
VIM-201ENST00000224237 CACTIN-AS1Q8N1I8 211 aa16.5■□□□□ 0.23
VIM-201ENST00000224237 ISOC1Q96CN7 298 aa16.5■□□□□ 0.23
VIM-201ENST00000224237 LRRN3E7EW58 273 aa16.5■□□□□ 0.23
VIM-201ENST00000224237 STMND1H3BQB6 276 aa16.5■□□□□ 0.23
VIM-201ENST00000224237 SLC25A12O75746 678 aa16.5■□□□□ 0.23
VIM-201ENST00000224237 MSX1P28360 303 aa16.5■□□□□ 0.23
VIM-201ENST00000224237 PRPS1P60891 318 aa16.5■□□□□ 0.23
VIM-201ENST00000224237 RPS4XP62701 263 aaKnown RBP16.5■□□□□ 0.23
VIM-201ENST00000224237 FOXK2Q01167 660 aa16.5■□□□□ 0.23
VIM-201ENST00000224237 NXNL2Q5VZ03 156 aa16.5■□□□□ 0.23
VIM-201ENST00000224237 ASCL5Q7RTU5 278 aa16.5■□□□□ 0.23
VIM-201ENST00000224237 ARMC10Q8N2F6 343 aa16.5■□□□□ 0.23
VIM-201ENST00000224237 ST8SIA1Q92185 356 aa16.5■□□□□ 0.23
VIM-201ENST00000224237 TMEM80Q96HE8 168 aa16.5■□□□□ 0.23
VIM-201ENST00000224237 CMC2Q9NRP2 79 aa16.5■□□□□ 0.23
VIM-201ENST00000224237 PPP4R1LQ9P1A2 415 aa16.5■□□□□ 0.23
VIM-201ENST00000224237 WARS2Q9UGM6 360 aaKnown RBP16.5■□□□□ 0.23
VIM-201ENST00000224237 WIF1Q9Y5W5 379 aa16.5■□□□□ 0.23
VIM-201ENST00000224237 IRGMA1A4Y4 181 aa16.49■□□□□ 0.23
VIM-201ENST00000224237 RAD1O60671 282 aa16.49■□□□□ 0.23
VIM-201ENST00000224237 NOL3O60936 208 aaKnown RBP16.49■□□□□ 0.23
VIM-201ENST00000224237 SLC2A10O95528 541 aa16.49■□□□□ 0.23
VIM-201ENST00000224237 F8A1P23610 371 aa16.49■□□□□ 0.23
VIM-201ENST00000224237 PSMB9P28065 219 aa16.49■□□□□ 0.23
VIM-201ENST00000224237 PTGDSP41222 190 aa16.49■□□□□ 0.23
VIM-201ENST00000224237 SSR4P51571 173 aa16.49■□□□□ 0.23
VIM-201ENST00000224237 IRF3Q14653 427 aa16.49■□□□□ 0.23
VIM-201ENST00000224237 AADACL4Q5VUY2 407 aa16.49■□□□□ 0.23
VIM-201ENST00000224237 BICRALQ6AI39 1079 aa16.49■□□□□ 0.23
VIM-201ENST00000224237 OR5M10Q6IEU7 315 aa16.49■□□□□ 0.23
VIM-201ENST00000224237 ARHGAP11AQ6P4F7 1023 aa16.49■□□□□ 0.23
VIM-201ENST00000224237 RPS19BP1Q86WX3 136 aaKnown RBP16.49■□□□□ 0.23
VIM-201ENST00000224237 LRRC17Q8N6Y2 441 aa16.49■□□□□ 0.23
VIM-201ENST00000224237 ASB15Q8WXK1 588 aa16.49■□□□□ 0.23
VIM-201ENST00000224237 NANSQ9NR45 359 aa16.49■□□□□ 0.23
VIM-201ENST00000224237 MRPS18AQ9NVS2 196 aaKnown RBP16.49■□□□□ 0.23
VIM-201ENST00000224237 FBXL4Q9UKA2 621 aa16.49■□□□□ 0.23
VIM-201ENST00000224237 IGLV3-32A0A0A0MS00 114 aa16.48■□□□□ 0.23
VIM-201ENST00000224237 C2orf72A6NCS6 295 aa16.48■□□□□ 0.23
VIM-201ENST00000224237 TERTO14746 1132 aaKnown RBP16.48■□□□□ 0.23
VIM-201ENST00000224237 PPP1R3DO95685 299 aa16.48■□□□□ 0.23
VIM-201ENST00000224237 ADORA3P0DMS8 318 aa16.48■□□□□ 0.23
VIM-201ENST00000224237 PEPDP12955 493 aa16.48■□□□□ 0.23
VIM-201ENST00000224237 ACVR2AP27037 513 aa16.48■□□□□ 0.23
VIM-201ENST00000224237 NOS3P29474 1203 aa16.48■□□□□ 0.23
VIM-201ENST00000224237 CASP3P42574 277 aa16.48■□□□□ 0.23
VIM-201ENST00000224237 LIMK1P53667 647 aa16.48■□□□□ 0.23
VIM-201ENST00000224237 TMBIM6P55061 237 aa16.48■□□□□ 0.23
VIM-201ENST00000224237 CDH11P55287 796 aa16.48■□□□□ 0.23
VIM-201ENST00000224237 SNTA1Q13424 505 aa16.48■□□□□ 0.23
VIM-201ENST00000224237 ANKDD1AQ495B1 522 aa16.48■□□□□ 0.23
VIM-201ENST00000224237 KLHL22Q53GT1 634 aa16.48■□□□□ 0.23
VIM-201ENST00000224237 TMEM81Q6P7N7 255 aa16.48■□□□□ 0.23
VIM-201ENST00000224237 CXXC5Q7LFL8 322 aaKnown RBP16.48■□□□□ 0.23
VIM-201ENST00000224237 C10orf53Q8N6V4 93 aa16.48■□□□□ 0.23
VIM-201ENST00000224237 CRELD1Q96HD1 420 aa16.48■□□□□ 0.23
VIM-201ENST00000224237 SECISBP2Q96T21 854 aaKnown RBP16.48■□□□□ 0.23
VIM-201ENST00000224237 DOK1Q99704 481 aa16.48■□□□□ 0.23
VIM-201ENST00000224237 CDCP1Q9H5V8 836 aa16.48■□□□□ 0.23
VIM-201ENST00000224237 HINT3Q9NQE9 182 aaKnown RBP16.48■□□□□ 0.23
VIM-201ENST00000224237 CHCHD2Q9Y6H1 151 aaPredicted RBP16.48■□□□□ 0.23
VIM-201ENST00000224237 PCSK5Q92824 1860 aa16.48■□□□□ 0.23
VIM-201ENST00000224237 FAM186AA6NE01 2351 aa16.48■□□□□ 0.23
VIM-201ENST00000224237 TMED7-TICAM2A0A0A6YYA0 188 aa16.48■□□□□ 0.23
VIM-201ENST00000224237 MAN1A2O60476 641 aa16.48■□□□□ 0.23
VIM-201ENST00000224237 LCKP06239 509 aa16.48■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms