RNA–Protein interactions for RNA: ENST00000543627.1

DDB1-222, Transcript of damage specific DNA binding protein 1, human

TSL 5

Gene DDB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-222	ENST00000543627	STX11	O75558	287 aa		10.01	□□□□□ -0.81
DDB1-222	ENST00000543627	SOX30	O94993	753 aa		10.01	□□□□□ -0.81
DDB1-222	ENST00000543627	KRT75	O95678	551 aa		10.01	□□□□□ -0.81
DDB1-222	ENST00000543627	AGR2	O95994	175 aa		10.01	□□□□□ -0.81
DDB1-222	ENST00000543627	IL2RA	P01589	272 aa		10.01	□□□□□ -0.81
DDB1-222	ENST00000543627	HOXD4	P09016	255 aa	Predicted RBP	10.01	□□□□□ -0.81
DDB1-222	ENST00000543627	NR2F1	P10589	423 aa		10.01	□□□□□ -0.81
DDB1-222	ENST00000543627	CHRNB4	P30926	498 aa		10.01	□□□□□ -0.81
DDB1-222	ENST00000543627	ADH7	P40394	386 aa		10.01	□□□□□ -0.81
DDB1-222	ENST00000543627	ANXA11	P50995	505 aa	Known RBP	10.01	□□□□□ -0.81
DDB1-222	ENST00000543627	GUCY1A3	Q02108	690 aa		10.01	□□□□□ -0.81
DDB1-222	ENST00000543627	LRRC74A	Q0VAA2	488 aa		10.01	□□□□□ -0.81
DDB1-222	ENST00000543627	ART3	Q13508	389 aa		10.01	□□□□□ -0.81
DDB1-222	ENST00000543627	SF3B4	Q15427	424 aa	Known RBP eCLIP	10.01	□□□□□ -0.81	8e-11	■■□□□ 12.1
DDB1-222	ENST00000543627	SYPL1	Q16563	259 aa		10.01	□□□□□ -0.81
DDB1-222	ENST00000543627	SGCB	Q16585	318 aa		10.01	□□□□□ -0.81
DDB1-222	ENST00000543627	ARHGAP11B	Q3KRB8	267 aa		10.01	□□□□□ -0.81
DDB1-222	ENST00000543627	GTDC1	Q4AE62	458 aa		10.01	□□□□□ -0.81
DDB1-222	ENST00000543627	ACSF3	Q4G176	576 aa	Predicted RBP	10.01	□□□□□ -0.81
DDB1-222	ENST00000543627	COX20	Q5RI15	118 aa		10.01	□□□□□ -0.81
DDB1-222	ENST00000543627	SAXO2	Q658L1	398 aa		10.01	□□□□□ -0.81
DDB1-222	ENST00000543627	TNIP2	Q8NFZ5	429 aa		10.01	□□□□□ -0.81
DDB1-222	ENST00000543627	ROPN1L	Q96C74	230 aa		10.01	□□□□□ -0.81
DDB1-222	ENST00000543627	NTNG2	Q96CW9	530 aa		10.01	□□□□□ -0.81
DDB1-222	ENST00000543627	ARSG	Q96EG1	525 aa		10.01	□□□□□ -0.81
DDB1-222	ENST00000543627	NEURL3	Q96EH8	262 aa		10.01	□□□□□ -0.81
DDB1-222	ENST00000543627	TUBA1C	Q9BQE3	449 aa		10.01	□□□□□ -0.81
DDB1-222	ENST00000543627	PIGQ	Q9BRB3	760 aa		10.01	□□□□□ -0.81
DDB1-222	ENST00000543627	KCNJ16	Q9NPI9	418 aa		10.01	□□□□□ -0.81
DDB1-222	ENST00000543627		Q9UFV3	132 aa		10.01	□□□□□ -0.81
DDB1-222	ENST00000543627	WDR45	Q9Y484	360 aa		10.01	□□□□□ -0.81
DDB1-222	ENST00000543627	DTNA	Q9Y4J8	743 aa		10.01	□□□□□ -0.81
DDB1-222	ENST00000543627	MED12	Q93074	2177 aa		10.01	□□□□□ -0.81
DDB1-222	ENST00000543627	OR2M5	A3KFT3	312 aa		10	□□□□□ -0.81
DDB1-222	ENST00000543627	CLCA1	A8K7I4	914 aa		10	□□□□□ -0.81
DDB1-222	ENST00000543627		H0YC42	278 aa		10	□□□□□ -0.81
DDB1-222	ENST00000543627	C19orf84	I3L1E1	186 aa		10	□□□□□ -0.81
DDB1-222	ENST00000543627	OIP5	O43482	229 aa		10	□□□□□ -0.81
DDB1-222	ENST00000543627	TNFRSF21	O75509	655 aa		10	□□□□□ -0.81
DDB1-222	ENST00000543627	EPPIN	O95925	133 aa		10	□□□□□ -0.81
DDB1-222	ENST00000543627	AK1	P00568	194 aa		10	□□□□□ -0.81
DDB1-222	ENST00000543627	TROVE2	P10155	538 aa	Known RBP eCLIP	10	□□□□□ -0.81
DDB1-222	ENST00000543627	PEPD	P12955	493 aa		10	□□□□□ -0.81
DDB1-222	ENST00000543627	COX6B1	P14854	86 aa		10	□□□□□ -0.81
DDB1-222	ENST00000543627	BMP5	P22003	454 aa		10	□□□□□ -0.81
DDB1-222	ENST00000543627	CHM	P24386	653 aa		10	□□□□□ -0.81
DDB1-222	ENST00000543627	MSX1	P28360	303 aa		10	□□□□□ -0.81
DDB1-222	ENST00000543627	LCN1	P31025	176 aa		10	□□□□□ -0.81
DDB1-222	ENST00000543627	PTGER4	P35408	488 aa		10	□□□□□ -0.81
DDB1-222	ENST00000543627	TPD52	P55327	224 aa	Predicted RBP	10	□□□□□ -0.81
DDB1-222	ENST00000543627	GFRA1	P56159	465 aa		10	□□□□□ -0.81
DDB1-222	ENST00000543627	ZNF117	Q03924	483 aa		10	□□□□□ -0.81
DDB1-222	ENST00000543627	CHRNE	Q04844	493 aa		10	□□□□□ -0.81
DDB1-222	ENST00000543627	GANAB	Q14697	944 aa	Known RBP	10	□□□□□ -0.81
DDB1-222	ENST00000543627	ZNF630	Q2M218	657 aa	Predicted RBP	10	□□□□□ -0.81
DDB1-222	ENST00000543627	NHSL2	Q5HYW2	709 aa		10	□□□□□ -0.81
DDB1-222	ENST00000543627	EXOSC6	Q5RKV6	272 aa	Known RBP	10	□□□□□ -0.81
DDB1-222	ENST00000543627	DDX59	Q5T1V6	619 aa	Known RBP eCLIP	10	□□□□□ -0.81
DDB1-222	ENST00000543627	POMZP3	Q6PJE2	187 aa		10	□□□□□ -0.81
DDB1-222	ENST00000543627	CBLN3	Q6UW01	205 aa		10	□□□□□ -0.81
DDB1-222	ENST00000543627	GRAMD2A	Q8IUY3	354 aa		10	□□□□□ -0.81
DDB1-222	ENST00000543627	MISP	Q8IVT2	679 aa		10	□□□□□ -0.81
DDB1-222	ENST00000543627	MEIOB	Q8N635	442 aa		10	□□□□□ -0.81
DDB1-222	ENST00000543627	ANKFN1	Q8N957	763 aa		10	□□□□□ -0.81
DDB1-222	ENST00000543627	GOT1L1	Q8NHS2	421 aa	Predicted RBP	10	□□□□□ -0.81
DDB1-222	ENST00000543627	RNF138	Q8WVD3	245 aa		10	□□□□□ -0.81
DDB1-222	ENST00000543627	SPDL1	Q96EA4	605 aa		10	□□□□□ -0.81
DDB1-222	ENST00000543627	AURKB	Q96GD4	344 aa	Predicted RBP	10	□□□□□ -0.81
DDB1-222	ENST00000543627	PRRG4	Q9BZD6	226 aa		10	□□□□□ -0.81
DDB1-222	ENST00000543627	PRDM14	Q9GZV8	571 aa		10	□□□□□ -0.81
DDB1-222	ENST00000543627	TMEM185B	Q9H7F4	350 aa		10	□□□□□ -0.81
DDB1-222	ENST00000543627	SLC6A13	Q9NSD5	602 aa		10	□□□□□ -0.81
DDB1-222	ENST00000543627	MED17	Q9NVC6	651 aa		10	□□□□□ -0.81
DDB1-222	ENST00000543627	FGFR1OP2	Q9NVK5	253 aa		10	□□□□□ -0.81
DDB1-222	ENST00000543627	TRIM33	Q9UPN9	1127 aa		10	□□□□□ -0.81
DDB1-222	ENST00000543627	MRPS18C	Q9Y3D5	142 aa	Known RBP	10	□□□□□ -0.81
DDB1-222	ENST00000543627	UNC79	Q9P2D8	2635 aa		10	□□□□□ -0.81
DDB1-222	ENST00000543627	PCNX3	Q9H6A9	2034 aa		9.99	□□□□□ -0.81
DDB1-222	ENST00000543627	SERINC4	A6NH21	518 aa		9.99	□□□□□ -0.81
DDB1-222	ENST00000543627	HSPB2	A8KAH6	182 aa		9.99	□□□□□ -0.81
DDB1-222	ENST00000543627	HMGN4	O00479	90 aa		9.99	□□□□□ -0.81
DDB1-222	ENST00000543627	EIF1AY	O14602	144 aa	Known RBP	9.99	□□□□□ -0.81
DDB1-222	ENST00000543627	ZNF264	O43296	627 aa		9.99	□□□□□ -0.81
DDB1-222	ENST00000543627	H6PD	O95479	791 aa		9.99	□□□□□ -0.81
DDB1-222	ENST00000543627	CSTA	P01040	98 aa		9.99	□□□□□ -0.81
DDB1-222	ENST00000543627	NGFR	P08138	427 aa		9.99	□□□□□ -0.81
DDB1-222	ENST00000543627	UBTFL6	P0CB48	400 aa	Predicted RBP	9.99	□□□□□ -0.81
DDB1-222	ENST00000543627	UBL4A	P11441	157 aa		9.99	□□□□□ -0.81
DDB1-222	ENST00000543627	ETFA	P13804	333 aa		9.99	□□□□□ -0.81
DDB1-222	ENST00000543627	CPN1	P15169	458 aa		9.99	□□□□□ -0.81
DDB1-222	ENST00000543627	AGA	P20933	346 aa		9.99	□□□□□ -0.81
DDB1-222	ENST00000543627	RYK	P34925	604 aa		9.99	□□□□□ -0.81
DDB1-222	ENST00000543627	EIF1AX	P47813	144 aa	Known RBP	9.99	□□□□□ -0.81
DDB1-222	ENST00000543627	LHX2	P50458	406 aa		9.99	□□□□□ -0.81
DDB1-222	ENST00000543627	P2RX1	P51575	399 aa		9.99	□□□□□ -0.81
DDB1-222	ENST00000543627	ARFIP2	P53365	341 aa		9.99	□□□□□ -0.81
DDB1-222	ENST00000543627	SUCLG1	P53597	346 aa	Known RBP	9.99	□□□□□ -0.81
DDB1-222	ENST00000543627	B3GALT5-AS1	P59052	145 aa		9.99	□□□□□ -0.81
DDB1-222	ENST00000543627	SNTB1	Q13884	538 aa	Known RBP	9.99	□□□□□ -0.81
DDB1-222	ENST00000543627	SQLE	Q14534	574 aa		9.99	□□□□□ -0.81

Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms