RNA–Protein interactions for RNA: ENST00000543627.1

DDB1-222, Transcript of damage specific DNA binding protein 1, human

TSL 5

Gene DDB1, Length 540 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDB1-222	ENST00000543627	ZNF787	Q6DD87	383 aa		10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	AAGAB	Q6PD74	315 aa		10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	ENPP6	Q6UWR7	440 aa		10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	PLXDC2	Q6UX71	529 aa		10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	CHMP1B	Q7LBR1	199 aa		10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	PM20D2	Q8IYS1	436 aa		10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	ULK2	Q8IYT8	1036 aa		10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	MARVELD2	Q8N4S9	558 aa		10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	TMCO5A	Q8N6Q1	288 aa		10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	TRIML2	Q8N7C3	387 aa		10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	GLB1L3	Q8NCI6	653 aa	Predicted RBP	10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	PSMA8	Q8TAA3	256 aa		10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	VPS33A	Q96AX1	596 aa		10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	MAEL	Q96JY0	434 aa	Known RBP	10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	DMRTA2	Q96SC8	542 aa		10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	TTYH2	Q9BSA4	534 aa		10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	UCK2	Q9BZX2	261 aa		10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	UBQLN4	Q9NRR5	601 aa		10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	DUSP22	Q9NRW4	184 aa		10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	EXD2	Q9NVH0	621 aa		10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	BTNL2	Q9UIR0	455 aa		10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	MKLN1	Q9UL63	735 aa		10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	ABCG2	Q9UNQ0	655 aa		10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	RNF6	Q9Y252	685 aa		10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	HECTD1	Q9ULT8	2610 aa		10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	USP9X	Q93008	2570 aa	Predicted RBP	10.04	□□□□□ -0.8
DDB1-222	ENST00000543627	ICE1	Q9Y2F5	2266 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627		A0A0G2JND7	137 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	NKX2-6	A6NCS4	301 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	AHRR	A9YTQ3	701 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	KDM4E	B2RXH2	506 aa	Predicted RBP	10.03	□□□□□ -0.8
DDB1-222	ENST00000543627		H3BNH8	94 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	NR5A2	O00482	541 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	SEC14L5	O43304	696 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	HCRTR2	O43614	444 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	SCN2B	O60939	215 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	TGDS	O95455	350 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	CLDN14	O95500	239 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	ACTL6A	O96019	429 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	C1QC	P02747	245 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	IL6	P05231	212 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	GLI4	P10075	376 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	TBXA2R	P21731	343 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	DCT	P40126	519 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	CCR4	P51679	360 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	AGFG1	P52594	562 aa	Known RBP	10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	HPCA	P84074	193 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	RCAN2	Q14206	197 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	CPEB4	Q17RY0	729 aa	Known RBP eCLIP	10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	NDUFAF6	Q330K2	333 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	TIGD2	Q4W5G0	525 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	AGK	Q53H12	422 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	VASN	Q6EMK4	673 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	RTL6	Q6ICC9	239 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	RNF130	Q86XS8	419 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	ARFGAP2	Q8N6H7	521 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	ZNF527	Q8NB42	609 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	FAM110B	Q8TC76	370 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	WDYHV1	Q96HA8	205 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	CCDC115	Q96NT0	180 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	SDF2	Q99470	211 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	OR2B2	Q9GZK3	357 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	SERHL2	Q9H4I8	314 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	RMND5A	Q9H871	391 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	ZIM2	Q9NZV7	527 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	CCDC167	Q9P0B6	97 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	CARD8	Q9Y2G2	431 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	FAM215A	Q9Y5M1	114 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627	LRRK2	Q5S007	2527 aa		10.03	□□□□□ -0.8
DDB1-222	ENST00000543627		B4DXG7	233 aa		10.02	□□□□□ -0.81
DDB1-222	ENST00000543627	ALG1L2	C9J202	215 aa		10.02	□□□□□ -0.81
DDB1-222	ENST00000543627	ZIC3	O60481	467 aa		10.02	□□□□□ -0.81
DDB1-222	ENST00000543627	FCMR	O60667	390 aa		10.02	□□□□□ -0.81
DDB1-222	ENST00000543627	POU3F2	P20265	443 aa	Predicted RBP	10.02	□□□□□ -0.81
DDB1-222	ENST00000543627	CRAT	P43155	626 aa		10.02	□□□□□ -0.81
DDB1-222	ENST00000543627	ZFP36L2	P47974	494 aa	Known RBP	10.02	□□□□□ -0.81
DDB1-222	ENST00000543627	KHK	P50053	298 aa		10.02	□□□□□ -0.81
DDB1-222	ENST00000543627	ZNF41	P51814	821 aa	Predicted RBP	10.02	□□□□□ -0.81
DDB1-222	ENST00000543627	ATP12A	P54707	1039 aa		10.02	□□□□□ -0.81
DDB1-222	ENST00000543627	CD226	Q15762	336 aa		10.02	□□□□□ -0.81
DDB1-222	ENST00000543627	PDZK1	Q5T2W1	519 aa		10.02	□□□□□ -0.81
DDB1-222	ENST00000543627	SLC2A7	Q6PXP3	512 aa		10.02	□□□□□ -0.81
DDB1-222	ENST00000543627	ARSK	Q6UWY0	536 aa		10.02	□□□□□ -0.81
DDB1-222	ENST00000543627	P4HA3	Q7Z4N8	544 aa		10.02	□□□□□ -0.81
DDB1-222	ENST00000543627	FADS6	Q8N9I5	356 aa		10.02	□□□□□ -0.81
DDB1-222	ENST00000543627	ATP6V1C2	Q8NEY4	427 aa		10.02	□□□□□ -0.81
DDB1-222	ENST00000543627	B4GALNT2	Q8NHY0	566 aa		10.02	□□□□□ -0.81
DDB1-222	ENST00000543627	PHF10	Q8WUB8	498 aa	Known RBP	10.02	□□□□□ -0.81
DDB1-222	ENST00000543627	ASB5	Q8WWX0	329 aa		10.02	□□□□□ -0.81
DDB1-222	ENST00000543627	HOXB13	Q92826	284 aa	Predicted RBP	10.02	□□□□□ -0.81
DDB1-222	ENST00000543627	C1GALT1C1	Q96EU7	318 aa		10.02	□□□□□ -0.81
DDB1-222	ENST00000543627	ITCH	Q96J02	903 aa		10.02	□□□□□ -0.81
DDB1-222	ENST00000543627	CCDC28B	Q9BUN5	200 aa		10.02	□□□□□ -0.81
DDB1-222	ENST00000543627	HOXD1	Q9GZZ0	328 aa		10.02	□□□□□ -0.81
DDB1-222	ENST00000543627	SDR39U1	Q9NRG7	319 aa	Predicted RBP	10.02	□□□□□ -0.81
DDB1-222	ENST00000543627	ZNF337	Q9Y3M9	751 aa		10.02	□□□□□ -0.81
DDB1-222	ENST00000543627	PCNX1	Q96RV3	2341 aa		10.01	□□□□□ -0.81
DDB1-222	ENST00000543627		A0A0G2JNJ9	132 aa		10.01	□□□□□ -0.81
DDB1-222	ENST00000543627	FAM234B	A2RU67	622 aa		10.01	□□□□□ -0.81
DDB1-222	ENST00000543627	EDF1	O60869	148 aa	Known RBP	10.01	□□□□□ -0.81

Retrieved 100 of 20,778 RNA–protein pairs in 59 ms