RNA–Protein interactions for RNA: YDL042C

SIR2, Transcript of Conserved NAD+ dependent histone deacetylase of the Sirtuin family, yeast

Gene SIR2, Length 1,689 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SIR2	YDL042C	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	7.5	□□□□□ -1.21	not detected
SIR2	YDL042C	INP52	P50942	1183 aa		7.5	□□□□□ -1.21
SIR2	YDL042C	CDA1	Q06702	301 aa		7.5	□□□□□ -1.21
SIR2	YDL042C	RPS9A	O13516	197 aa	Known RBP	7.49	□□□□□ -1.21
SIR2	YDL042C	GRX4	P32642	244 aa		7.49	□□□□□ -1.21
SIR2	YDL042C	YLR001C	Q07895	862 aa		7.49	□□□□□ -1.21
SIR2	YDL042C	RAD18	P10862	487 aa		7.48	□□□□□ -1.21
SIR2	YDL042C	MCD4	P36051	919 aa		7.48	□□□□□ -1.21
SIR2	YDL042C	UBP12	P39538	1254 aa		7.48	□□□□□ -1.21
SIR2	YDL042C	SDA1	P53313	767 aa	Known RBP	7.48	□□□□□ -1.21
SIR2	YDL042C	HDA1	P53973	706 aa		7.48	□□□□□ -1.21
SIR2	YDL042C	YOR352W	Q08816	343 aa		7.48	□□□□□ -1.21
SIR2	YDL042C	YDL177C	Q12257	170 aa		7.48	□□□□□ -1.21
SIR2	YDL042C	CYS3	P31373	394 aa	Known RBP	7.47	□□□□□ -1.21
SIR2	YDL042C	TYE7	P33122	291 aa	Predicted RBP	7.47	□□□□□ -1.21
SIR2	YDL042C	POL12	P38121	705 aa	Predicted RBP	7.47	□□□□□ -1.21
SIR2	YDL042C	PSP2	P50109	593 aa	Known RBP	7.47	□□□□□ -1.21
SIR2	YDL042C	SNO2	P53823	222 aa		7.47	□□□□□ -1.21
SIR2	YDL042C	LRS4	Q04087	347 aa	Known RBP	7.47	□□□□□ -1.21
SIR2	YDL042C	YCL002C	P25565	263 aa		7.47	□□□□□ -1.21
SIR2	YDL042C	PCL2	P25693	308 aa		7.47	□□□□□ -1.21
SIR2	YDL042C	YEL1	P34225	687 aa		7.47	□□□□□ -1.21
SIR2	YDL042C	MND2	P40577	368 aa		7.47	□□□□□ -1.21
SIR2	YDL042C	YKR011C	Q02209	353 aa		7.47	□□□□□ -1.21
SIR2	YDL042C	RPD3	P32561	433 aa		7.46	□□□□□ -1.22
SIR2	YDL042C	SGD1	Q06132	899 aa		7.46	□□□□□ -1.22
SIR2	YDL042C	DFG16	Q99234	619 aa		7.46	□□□□□ -1.22
SIR2	YDL042C	GLT1	Q12680	2145 aa	Known RBP	7.46	□□□□□ -1.22
SIR2	YDL042C	SAP190	P36123	1033 aa		7.45	□□□□□ -1.22
SIR2	YDL042C	PMT3	P47190	753 aa		7.45	□□□□□ -1.22
SIR2	YDL042C	SNP1	Q00916	300 aa	Predicted RBP	7.45	□□□□□ -1.22
SIR2	YDL042C	ROT1	Q03691	256 aa		7.45	□□□□□ -1.22
SIR2	YDL042C	IOC4	Q04213	475 aa		7.45	□□□□□ -1.22
SIR2	YDL042C	SSL1	Q04673	461 aa	Predicted RBP	7.45	□□□□□ -1.22
SIR2	YDL042C	THI73	Q07904	523 aa		7.45	□□□□□ -1.22
SIR2	YDL042C	SFL1	P20134	766 aa		7.44	□□□□□ -1.22
SIR2	YDL042C	YEN1	P40028	759 aa		7.44	□□□□□ -1.22
SIR2	YDL042C	RLP7	P40693	322 aa	Known RBP	7.44	□□□□□ -1.22
SIR2	YDL042C	ALY2	P47029	1046 aa		7.44	□□□□□ -1.22
SIR2	YDL042C	PLB2	Q03674	706 aa		7.44	□□□□□ -1.22
SIR2	YDL042C	POA1	P38218	177 aa		7.44	□□□□□ -1.22
SIR2	YDL042C	YIL108W	P40483	696 aa	Known RBP	7.44	□□□□□ -1.22
SIR2	YDL042C	SHR5	P41912	237 aa		7.44	□□□□□ -1.22
SIR2	YDL042C	PUS2	P53167	370 aa		7.44	□□□□□ -1.22
SIR2	YDL042C	PBP1	P53297	722 aa	Known RBP	7.44	□□□□□ -1.22
SIR2	YDL042C	YBR182C-A	Q8TGU6	64 aa		7.44	□□□□□ -1.22
SIR2	YDL042C	SPE1	P08432	466 aa		7.43	□□□□□ -1.22
SIR2	YDL042C	HOG1	P32485	435 aa		7.43	□□□□□ -1.22
SIR2	YDL042C	MAC1	P35192	417 aa		7.43	□□□□□ -1.22
SIR2	YDL042C	ATG19	P35193	415 aa		7.43	□□□□□ -1.22
SIR2	YDL042C	LAM1	P38851	1228 aa		7.43	□□□□□ -1.22
SIR2	YDL042C	RPN10	P38886	268 aa	Known RBP	7.43	□□□□□ -1.22
SIR2	YDL042C	MGS1	P40151	587 aa		7.43	□□□□□ -1.22
SIR2	YDL042C	HXT16	P47185	567 aa		7.43	□□□□□ -1.22
SIR2	YDL042C	YGR237C	P50089	785 aa		7.43	□□□□□ -1.22
SIR2	YDL042C	GTF1	P53260	183 aa	Predicted RBP	7.43	□□□□□ -1.22
SIR2	YDL042C	MRPL22	P53881	309 aa		7.43	□□□□□ -1.22
SIR2	YDL042C	PRC1	P00729	532 aa		7.42	□□□□□ -1.22
SIR2	YDL042C	LRG1	P35688	1017 aa		7.42	□□□□□ -1.22
SIR2	YDL042C	MET13	P53128	600 aa		7.42	□□□□□ -1.22
SIR2	YDL042C	COG8	Q04632	607 aa		7.42	□□□□□ -1.22
SIR2	YDL042C	TPO1	Q07824	586 aa		7.42	□□□□□ -1.22
SIR2	YDL042C	NUP145	P49687	1317 aa		7.42	□□□□□ -1.22
SIR2	YDL042C	DIF1	O13577	133 aa		7.41	□□□□□ -1.22
SIR2	YDL042C	SET5	P38890	526 aa	Known RBP	7.41	□□□□□ -1.22
SIR2	YDL042C	GCV2	P49095	1034 aa		7.41	□□□□□ -1.22
SIR2	YDL042C	HAL9	Q12180	1030 aa		7.41	□□□□□ -1.22
SIR2	YDL042C	YOR022C	Q12204	715 aa		7.41	□□□□□ -1.22
SIR2	YDL042C	SSB1	P11484	613 aa	Known RBP	7.41	□□□□□ -1.22
SIR2	YDL042C	SSB2	P40150	613 aa	Known RBP	7.41	□□□□□ -1.22
SIR2	YDL042C	UME1	Q03010	460 aa		7.41	□□□□□ -1.22
SIR2	YDL042C	NHX1	Q04121	633 aa		7.41	□□□□□ -1.22
SIR2	YDL042C	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	7.4	□□□□□ -1.23	not detected
SIR2	YDL042C	ECL1	P48235	211 aa		7.4	□□□□□ -1.23
SIR2	YDL042C	ADY3	Q07732	790 aa		7.4	□□□□□ -1.23
SIR2	YDL042C	PCM1	P38628	557 aa	Known RBP	7.39	□□□□□ -1.23
SIR2	YDL042C	MEF2	P39677	819 aa		7.39	□□□□□ -1.23
SIR2	YDL042C	MET12	P46151	657 aa		7.39	□□□□□ -1.23
SIR2	YDL042C	AIM14	P53109	570 aa		7.39	□□□□□ -1.23
SIR2	YDL042C	ATG33	Q06485	197 aa		7.39	□□□□□ -1.23
SIR2	YDL042C	GUP2	Q08929	609 aa		7.39	□□□□□ -1.23
SIR2	YDL042C	RPP2A	P05319	106 aa	Known RBP	7.38	□□□□□ -1.23
SIR2	YDL042C	FBP1	P09201	348 aa		7.38	□□□□□ -1.23
SIR2	YDL042C	TYS1	P36421	394 aa	Known RBP	7.38	□□□□□ -1.23
SIR2	YDL042C	CRR1	Q05790	422 aa		7.38	□□□□□ -1.23
SIR2	YDL042C	WHI4	Q07655	649 aa	Known RBP	7.38	□□□□□ -1.23
SIR2	YDL042C	GUD1	Q07729	489 aa		7.38	□□□□□ -1.23
SIR2	YDL042C	GIN4	Q12263	1142 aa		7.38	□□□□□ -1.23
SIR2	YDL042C	DOT6	P40059	670 aa	Known RBP	7.38	□□□□□ -1.23
SIR2	YDL042C	GPB1	Q08886	897 aa		7.38	□□□□□ -1.23
SIR2	YDL042C	THI21	Q08975	551 aa		7.38	□□□□□ -1.23
SIR2	YDL042C	DUS1	P53759	423 aa	Known RBP	7.37	□□□□□ -1.23
SIR2	YDL042C	HSL7	P38274	827 aa		7.36	□□□□□ -1.23
SIR2	YDL042C	URM1	P40554	99 aa	Predicted RBP	7.36	□□□□□ -1.23
SIR2	YDL042C	GPG1	P53130	126 aa		7.36	□□□□□ -1.23
SIR2	YDL042C	GCN5	Q03330	439 aa		7.36	□□□□□ -1.23
SIR2	YDL042C	YDR338C	Q05497	695 aa		7.36	□□□□□ -1.23
SIR2	YDL042C	DUS4	Q06063	367 aa		7.36	□□□□□ -1.23
SIR2	YDL042C	RXT3	Q07458	294 aa		7.36	□□□□□ -1.23
SIR2	YDL042C	HMI1	Q12039	706 aa		7.36	□□□□□ -1.23

Retrieved 100 of 5,963 RNA–protein pairs in 19.1 ms