RNA–Protein interactions for RNA: YBR278W

DPB3, Transcript of Third-largest subunit of DNA polymerase II (DNA polymerase epsilon), yeast

Gene DPB3, Length 606 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DPB3	YBR278W	URA1	P28272	314 aa	Predicted RBP	4.08	□□□□□ -1.76
DPB3	YBR278W	EUG1	P32474	517 aa		4.08	□□□□□ -1.76
DPB3	YBR278W	PRP19	P32523	503 aa	Known RBP	4.08	□□□□□ -1.76
DPB3	YBR278W	YBR071W	P38243	211 aa		4.08	□□□□□ -1.76
DPB3	YBR278W	YAP1801	P38856	637 aa		4.08	□□□□□ -1.76
DPB3	YBR278W	JSN1	P47135	1091 aa	Known RBP RIP-Chip data	4.08	□□□□□ -1.76	not detected
DPB3	YBR278W	YJR096W	P47137	282 aa		4.08	□□□□□ -1.76
DPB3	YBR278W	TAD1	P53065	400 aa		4.08	□□□□□ -1.76
DPB3	YBR278W	COG6	P53959	839 aa		4.08	□□□□□ -1.76
DPB3	YBR278W	RCM1	P53972	490 aa		4.08	□□□□□ -1.76
DPB3	YBR278W	ATG33	Q06485	197 aa		4.08	□□□□□ -1.76
DPB3	YBR278W	GUD1	Q07729	489 aa		4.08	□□□□□ -1.76
DPB3	YBR278W	TRE2	Q08693	809 aa		4.08	□□□□□ -1.76
DPB3	YBR278W	GUP2	Q08929	609 aa		4.08	□□□□□ -1.76
DPB3	YBR278W	OSW2	Q12202	724 aa		4.08	□□□□□ -1.76
DPB3	YBR278W	DAL7	P21826	554 aa		4.07	□□□□□ -1.76
DPB3	YBR278W	RFA1	P22336	621 aa	Known RBP	4.07	□□□□□ -1.76
DPB3	YBR278W	PUB1	P32588	453 aa	Known RBP RIP-Chip data	4.07	□□□□□ -1.76	not detected
DPB3	YBR278W	SEC6	P32844	805 aa		4.07	□□□□□ -1.76
DPB3	YBR278W	AIM26	P32858	118 aa		4.07	□□□□□ -1.76
DPB3	YBR278W	ECM21	P38167	1117 aa	Known RBP	4.07	□□□□□ -1.76
DPB3	YBR278W	CKB2	P38930	258 aa		4.07	□□□□□ -1.76
DPB3	YBR278W	PEX7	P39108	375 aa		4.07	□□□□□ -1.76
DPB3	YBR278W	ALY2	P47029	1046 aa		4.07	□□□□□ -1.76
DPB3	YBR278W	HXT16	P47185	567 aa		4.07	□□□□□ -1.76
DPB3	YBR278W	NOG2	P53742	486 aa	Known RBP	4.07	□□□□□ -1.76
DPB3	YBR278W	MAP1	Q01662	387 aa	Known RBP RIP-Chip data	4.07	□□□□□ -1.76	not detected
DPB3	YBR278W	LRS4	Q04087	347 aa	Known RBP	4.07	□□□□□ -1.76
DPB3	YBR278W	RIB2	Q12362	591 aa	Known RBP	4.07	□□□□□ -1.76
DPB3	YBR278W	CYC7	P00045	113 aa		4.06	□□□□□ -1.76
DPB3	YBR278W	MIH1	P23748	554 aa		4.06	□□□□□ -1.76
DPB3	YBR278W	AIM14	P53109	570 aa		4.06	□□□□□ -1.76
DPB3	YBR278W	PEX14	P53112	341 aa		4.06	□□□□□ -1.76
DPB3	YBR278W	BRE4	Q07660	1125 aa		4.06	□□□□□ -1.76
DPB3	YBR278W	TRE1	Q08919	783 aa		4.06	□□□□□ -1.76
DPB3	YBR278W	TMA7	Q3E764	64 aa	Known RBP	4.06	□□□□□ -1.76
DPB3	YBR278W	NOT3	P06102	836 aa	Known RBP	4.05	□□□□□ -1.76
DPB3	YBR278W	SPS1	P08458	490 aa		4.05	□□□□□ -1.76
DPB3	YBR278W	MSB1	P21339	1137 aa	Known RBP	4.05	□□□□□ -1.76
DPB3	YBR278W	RFC5	P38251	354 aa		4.05	□□□□□ -1.76
DPB3	YBR278W	PTC7	P38797	343 aa		4.05	□□□□□ -1.76
DPB3	YBR278W	RPN10	P38886	268 aa	Known RBP	4.05	□□□□□ -1.76
DPB3	YBR278W	OAF1	P39720	1047 aa	Predicted RBP	4.05	□□□□□ -1.76
DPB3	YBR278W	DOT6	P40059	670 aa	Known RBP	4.05	□□□□□ -1.76
DPB3	YBR278W	GTS1	P40956	396 aa		4.05	□□□□□ -1.76
DPB3	YBR278W	GZF3	P42944	551 aa	Known RBP	4.05	□□□□□ -1.76
DPB3	YBR278W	NHX1	Q04121	633 aa		4.05	□□□□□ -1.76
DPB3	YBR278W	SIZ1	Q04195	904 aa		4.05	□□□□□ -1.76
DPB3	YBR278W	YDR338C	Q05497	695 aa		4.05	□□□□□ -1.76
DPB3	YBR278W	YTM1	Q12024	460 aa	Predicted RBP	4.05	□□□□□ -1.76
DPB3	YBR278W	GIN4	Q12263	1142 aa		4.05	□□□□□ -1.76
DPB3	YBR278W	RPS9A	O13516	197 aa	Known RBP	4.04	□□□□□ -1.76
DPB3	YBR278W	YCL002C	P25565	263 aa		4.04	□□□□□ -1.76
DPB3	YBR278W	SRP101	P32916	621 aa		4.04	□□□□□ -1.76
DPB3	YBR278W	STE13	P33894	931 aa		4.04	□□□□□ -1.76
DPB3	YBR278W	SET5	P38890	526 aa	Known RBP	4.04	□□□□□ -1.76
DPB3	YBR278W	RLP7	P40693	322 aa	Known RBP	4.04	□□□□□ -1.76
DPB3	YBR278W	YGR153W	P48238	217 aa		4.04	□□□□□ -1.76
DPB3	YBR278W	RAI1	P53063	387 aa	Known RBP	4.04	□□□□□ -1.76
DPB3	YBR278W	HDA1	P53973	706 aa		4.04	□□□□□ -1.76
DPB3	YBR278W	SND1	Q04007	877 aa		4.04	□□□□□ -1.76
DPB3	YBR278W	NSI1	Q12457	570 aa		4.04	□□□□□ -1.76
DPB3	YBR278W	YBR182C-A	Q8TGU6	64 aa		4.04	□□□□□ -1.76
DPB3	YBR278W	DIF1	O13577	133 aa		4.03	□□□□□ -1.76
DPB3	YBR278W	KIN2	P13186	1147 aa	Known RBP	4.03	□□□□□ -1.76
DPB3	YBR278W	AEP2	P22136	580 aa		4.03	□□□□□ -1.76
DPB3	YBR278W	APL1	P27351	700 aa		4.03	□□□□□ -1.76
DPB3	YBR278W	CCR4	P31384	837 aa	Known RBP	4.03	□□□□□ -1.76
DPB3	YBR278W	PLC1	P32383	869 aa		4.03	□□□□□ -1.76
DPB3	YBR278W	TYE7	P33122	291 aa	Predicted RBP	4.03	□□□□□ -1.76
DPB3	YBR278W	TFC4	P33339	1025 aa		4.03	□□□□□ -1.76
DPB3	YBR278W	SAP190	P36123	1033 aa		4.03	□□□□□ -1.76
DPB3	YBR278W	ABZ1	P37254	787 aa	Predicted RBP	4.03	□□□□□ -1.76
DPB3	YBR278W	HSL7	P38274	827 aa		4.03	□□□□□ -1.76
DPB3	YBR278W	DUG1	P43616	481 aa	Known RBP	4.03	□□□□□ -1.76
DPB3	YBR278W	RET2	P43621	546 aa		4.03	□□□□□ -1.76
DPB3	YBR278W	CTH1	P47976	325 aa		4.03	□□□□□ -1.76
DPB3	YBR278W	YNL034W	P53963	612 aa		4.03	□□□□□ -1.76
DPB3	YBR278W	YNL018C	P53976	612 aa		4.03	□□□□□ -1.76
DPB3	YBR278W	YKR011C	Q02209	353 aa		4.03	□□□□□ -1.76
DPB3	YBR278W	MSC2	Q03455	724 aa		4.03	□□□□□ -1.76
DPB3	YBR278W	CDA1	Q06702	301 aa		4.03	□□□□□ -1.76
DPB3	YBR278W	YOR378W	Q08902	515 aa		4.03	□□□□□ -1.76
DPB3	YBR278W	SLX4	Q12098	748 aa		4.03	□□□□□ -1.76
DPB3	YBR278W	PRC1	P00729	532 aa		4.02	□□□□□ -1.77
DPB3	YBR278W	GCD1	P09032	578 aa	Predicted RBP	4.02	□□□□□ -1.77
DPB3	YBR278W	TDA3	P38758	523 aa		4.02	□□□□□ -1.77
DPB3	YBR278W	PEA2	P40091	420 aa		4.02	□□□□□ -1.77
DPB3	YBR278W	CEP3	P40969	608 aa		4.02	□□□□□ -1.77
DPB3	YBR278W	SHR5	P41912	237 aa		4.02	□□□□□ -1.77
DPB3	YBR278W	MNN11	P46985	422 aa	Known RBP	4.02	□□□□□ -1.77
DPB3	YBR278W	NIT2	P47016	307 aa		4.02	□□□□□ -1.77
DPB3	YBR278W	UBC9	P50623	157 aa	Predicted RBP	4.02	□□□□□ -1.77
DPB3	YBR278W	TGL2	P54857	326 aa		4.02	□□□□□ -1.77
DPB3	YBR278W	VPS30	Q02948	557 aa		4.02	□□□□□ -1.77
DPB3	YBR278W	SSY1	Q03770	852 aa		4.02	□□□□□ -1.77
DPB3	YBR278W	YOR022C	Q12204	715 aa		4.02	□□□□□ -1.77
DPB3	YBR278W	ATP4	P05626	244 aa		4.01	□□□□□ -1.77
DPB3	YBR278W	HSF1	P10961	833 aa		4.01	□□□□□ -1.77
DPB3	YBR278W	CYS3	P31373	394 aa	Known RBP	4.01	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 17.5 ms