RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 TTC9Q92623 222 aa2.03□□□□□ -2.08
VPS35-212ENST00000640313 L3MBTL2Q969R5 705 aa2.03□□□□□ -2.08
VPS35-212ENST00000640313 ASIC4Q96FT7 647 aa2.03□□□□□ -2.08
VPS35-212ENST00000640313 DDRGK1Q96HY6 314 aa2.03□□□□□ -2.08
VPS35-212ENST00000640313 UBE2OQ9C0C9 1292 aaKnown RBP2.03□□□□□ -2.08
VPS35-212ENST00000640313 BRD7Q9NPI1 651 aa2.03□□□□□ -2.08
VPS35-212ENST00000640313 FRRS1LQ9P0K9 344 aa2.03□□□□□ -2.08
VPS35-212ENST00000640313 SCHIP1Q9P0W5 487 aaPredicted RBP2.03□□□□□ -2.08
VPS35-212ENST00000640313 STOML1Q9UBI4 398 aa2.03□□□□□ -2.08
VPS35-212ENST00000640313 SERTAD1Q9UHV2 236 aa2.03□□□□□ -2.08
VPS35-212ENST00000640313 PARP3Q9Y6F1 533 aa2.03□□□□□ -2.08
VPS35-212ENST00000640313 PRR19A6NJB7 356 aa2.02□□□□□ -2.09
VPS35-212ENST00000640313 F8W735 103 aaPredicted RBP2.02□□□□□ -2.09
VPS35-212ENST00000640313 BACH1O14867 736 aa2.02□□□□□ -2.09
VPS35-212ENST00000640313 DEAF1O75398 565 aaPredicted RBP2.02□□□□□ -2.09
VPS35-212ENST00000640313 PCSK7Q16549 785 aa2.02□□□□□ -2.09
VPS35-212ENST00000640313 MAP7D1Q3KQU3 841 aa2.02□□□□□ -2.09
VPS35-212ENST00000640313 C1orf53Q5VUE5 145 aa2.02□□□□□ -2.09
VPS35-212ENST00000640313 SPOCD1Q6ZMY3 1216 aa2.02□□□□□ -2.09
VPS35-212ENST00000640313 CBLL1Q75N03 491 aa2.02□□□□□ -2.09
VPS35-212ENST00000640313 WFDC8Q8IUA0 241 aa2.02□□□□□ -2.09
VPS35-212ENST00000640313 BHMTQ93088 406 aa2.02□□□□□ -2.09
VPS35-212ENST00000640313 CEP63Q96MT8 703 aa2.02□□□□□ -2.09
VPS35-212ENST00000640313 MRPL18Q9H0U6 180 aaKnown RBP2.02□□□□□ -2.09
VPS35-212ENST00000640313 DNAJB12Q9NXW2 375 aaKnown RBP2.02□□□□□ -2.09
VPS35-212ENST00000640313 ANKIB1Q9P2G1 1089 aa2.02□□□□□ -2.09
VPS35-212ENST00000640313 NAGPAQ9UK23 515 aa2.02□□□□□ -2.09
VPS35-212ENST00000640313 DBX1A6NMT0 343 aa2.01□□□□□ -2.09
VPS35-212ENST00000640313 SFI1A8K8P3 1242 aa2.01□□□□□ -2.09
VPS35-212ENST00000640313 ALX3O95076 343 aa2.01□□□□□ -2.09
VPS35-212ENST00000640313 JUNBP17275 347 aaPredicted RBP2.01□□□□□ -2.09
VPS35-212ENST00000640313 ITGB5P18084 799 aa2.01□□□□□ -2.09
VPS35-212ENST00000640313 BRPF1P55201 1214 aaPredicted RBP2.01□□□□□ -2.09
VPS35-212ENST00000640313 TYRO3Q06418 890 aa2.01□□□□□ -2.09
VPS35-212ENST00000640313 NFIAQ12857 509 aa2.01□□□□□ -2.09
VPS35-212ENST00000640313 SLFNL1Q499Z3 407 aa2.01□□□□□ -2.09
VPS35-212ENST00000640313 OXLD1Q5BKU9 147 aa2.01□□□□□ -2.09
VPS35-212ENST00000640313 ABI1Q8IZP0 508 aa2.01□□□□□ -2.09
VPS35-212ENST00000640313 DCAF11Q8TEB1 546 aa2.01□□□□□ -2.09
VPS35-212ENST00000640313 LPIN3Q9BQK8 851 aa2.01□□□□□ -2.09
VPS35-212ENST00000640313 GSX2Q9BZM3 304 aa2.01□□□□□ -2.09
VPS35-212ENST00000640313 FAM117AQ9C073 453 aa2.01□□□□□ -2.09
VPS35-212ENST00000640313 IGFLR1Q9H665 355 aa2.01□□□□□ -2.09
VPS35-212ENST00000640313 SLC24A3Q9HC58 644 aa2.01□□□□□ -2.09
VPS35-212ENST00000640313 SERTM1A2A2V5 107 aa2□□□□□ -2.09
VPS35-212ENST00000640313 DHX15O43143 795 aaKnown RBP2□□□□□ -2.09
VPS35-212ENST00000640313 MAP3K6O95382 1288 aa2□□□□□ -2.09
VPS35-212ENST00000640313 HIRAP54198 1017 aaPredicted RBP2□□□□□ -2.09
VPS35-212ENST00000640313 EIF4G2P78344 907 aaKnown RBP eCLIP2□□□□□ -2.09
VPS35-212ENST00000640313 TBC1D8BQ0IIM8 1120 aa2□□□□□ -2.09
VPS35-212ENST00000640313 KRTAP19-4Q3LI73 84 aa2□□□□□ -2.09
VPS35-212ENST00000640313 RNF43Q68DV7 783 aa2□□□□□ -2.09
VPS35-212ENST00000640313 POTEAQ6S8J7 498 aa2□□□□□ -2.09
VPS35-212ENST00000640313 FAM35AQ86V20 835 aa2□□□□□ -2.09
VPS35-212ENST00000640313 RHPN1Q8TCX5 695 aa2□□□□□ -2.09
VPS35-212ENST00000640313 DBNDD2Q9BQY9 259 aa2□□□□□ -2.09
VPS35-212ENST00000640313 SRA1Q9HD15 236 aaKnown RBP2□□□□□ -2.09
VPS35-212ENST00000640313 GOPCQ9HD26 462 aa2□□□□□ -2.09
VPS35-212ENST00000640313 PCDHGA11Q9Y5H2 935 aa2□□□□□ -2.09
VPS35-212ENST00000640313 GTF3C5Q9Y5Q8 519 aaPredicted RBP2□□□□□ -2.09
VPS35-212ENST00000640313 NDUFB9Q9Y6M9 179 aa2□□□□□ -2.09
VPS35-212ENST00000640313 EPHA4P54764 986 aa1.99□□□□□ -2.09
VPS35-212ENST00000640313 PLAURQ03405 335 aa1.99□□□□□ -2.09
VPS35-212ENST00000640313 CCINQ13939 588 aa1.99□□□□□ -2.09
VPS35-212ENST00000640313 UVSSAQ2YD98 709 aa1.99□□□□□ -2.09
VPS35-212ENST00000640313 PERM1Q5SV97 790 aa1.99□□□□□ -2.09
VPS35-212ENST00000640313 ELMSAN1Q6PJG2 1045 aa1.99□□□□□ -2.09
VPS35-212ENST00000640313 MAP4K3Q8IVH8 894 aa1.99□□□□□ -2.09
VPS35-212ENST00000640313 ARMC10Q8N2F6 343 aa1.99□□□□□ -2.09
VPS35-212ENST00000640313 ZNF280CQ8ND82 737 aa1.99□□□□□ -2.09
VPS35-212ENST00000640313 BANK1Q8NDB2 785 aa1.99□□□□□ -2.09
VPS35-212ENST00000640313 TRPM4Q8TD43 1214 aa1.99□□□□□ -2.09
VPS35-212ENST00000640313 SUSD3Q96L08 255 aa1.99□□□□□ -2.09
VPS35-212ENST00000640313 UBL7Q96S82 380 aaPredicted RBP1.99□□□□□ -2.09
VPS35-212ENST00000640313 KDM4CQ9H3R0 1056 aa1.99□□□□□ -2.09
VPS35-212ENST00000640313 C7orf69Q9H7B7 122 aa1.99□□□□□ -2.09
VPS35-212ENST00000640313 ZNF232Q9UNY5 417 aa1.99□□□□□ -2.09
VPS35-212ENST00000640313 ZBTB42B2RXF5 422 aa1.98□□□□□ -2.09
VPS35-212ENST00000640313 APBB1O00213 710 aa1.98□□□□□ -2.09
VPS35-212ENST00000640313 PRNPP04156 253 aa1.98□□□□□ -2.09
VPS35-212ENST00000640313 CPB1P15086 417 aa1.98□□□□□ -2.09
VPS35-212ENST00000640313 GLB1P16278 677 aa1.98□□□□□ -2.09
VPS35-212ENST00000640313 ZC3HAV1Q7Z2W4 902 aaKnown RBP1.98□□□□□ -2.09
VPS35-212ENST00000640313 BTLAQ7Z6A9 289 aa1.98□□□□□ -2.09
VPS35-212ENST00000640313 CLEC10AQ8IUN9 316 aa1.98□□□□□ -2.09
VPS35-212ENST00000640313 SLC9A9Q8IVB4 645 aa1.98□□□□□ -2.09
VPS35-212ENST00000640313 TRIM42Q8IWZ5 723 aa1.98□□□□□ -2.09
VPS35-212ENST00000640313 PLPP7Q8NBV4 271 aa1.98□□□□□ -2.09
VPS35-212ENST00000640313 FAM46AQ96IP4 442 aaKnown RBP1.98□□□□□ -2.09
VPS35-212ENST00000640313 HSH2DQ96JZ2 352 aa1.98□□□□□ -2.09
VPS35-212ENST00000640313 FBXL18Q96ME1 805 aa1.98□□□□□ -2.09
VPS35-212ENST00000640313 PCMTD1Q96MG8 357 aaPredicted RBP1.98□□□□□ -2.09
VPS35-212ENST00000640313 PNMA5Q96PV4 448 aa1.98□□□□□ -2.09
VPS35-212ENST00000640313 FAM83CQ9BQN1 747 aa1.98□□□□□ -2.09
VPS35-212ENST00000640313 KRTAP9-8Q9BYQ0 159 aa1.98□□□□□ -2.09
VPS35-212ENST00000640313 KRTAP9-3Q9BYQ3 159 aa1.98□□□□□ -2.09
VPS35-212ENST00000640313 CEP41Q9BYV8 373 aa1.98□□□□□ -2.09
VPS35-212ENST00000640313 C11orf16Q9NQ32 467 aa1.98□□□□□ -2.09
VPS35-212ENST00000640313 HMX2A2RU54 273 aa1.97□□□□□ -2.09
VPS35-212ENST00000640313 LZTS3O60299 673 aaPredicted RBP1.97□□□□□ -2.09
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms