RNA–Protein interactions for RNA: ENST00000636964.1

CLN6-217, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 2

Gene CLN6, Length 3,335 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-217ENST00000636964 ACSBG1Q96GR2 724 aa14.02□□□□□ -0.16
CLN6-217ENST00000636964 ESPNB1AK53 854 aa14.02□□□□□ -0.17
CLN6-217ENST00000636964 COL22A1Q8NFW1 1626 aaPredicted RBP14.02□□□□□ -0.17
CLN6-217ENST00000636964 SPATA31A1Q5TZJ5 1347 aa14.01□□□□□ -0.17
CLN6-217ENST00000636964 HSP90AB4PQ58FF6 505 aa14.01□□□□□ -0.17
CLN6-217ENST00000636964 CASC1Q6TDU7 716 aa14.01□□□□□ -0.17
CLN6-217ENST00000636964 DDB1Q16531 1140 aa14.01□□□□□ -0.17
CLN6-217ENST00000636964 KIF2CQ99661 725 aa14.01□□□□□ -0.17
CLN6-217ENST00000636964 STAP2Q9UGK3 403 aa14.01□□□□□ -0.17
CLN6-217ENST00000636964 TNS2Q63HR2 1409 aa14.01□□□□□ -0.17
CLN6-217ENST00000636964 SLC4A9Q96Q91 983 aa14□□□□□ -0.17
CLN6-217ENST00000636964 TRAK2O60296 914 aa14□□□□□ -0.17
CLN6-217ENST00000636964 G3BP1Q13283 466 aaKnown RBP eCLIP14□□□□□ -0.17
CLN6-217ENST00000636964 UBR2Q8IWV8 1755 aa14□□□□□ -0.17
CLN6-217ENST00000636964 CLASRPQ8N2M8 674 aaKnown RBP14□□□□□ -0.17
CLN6-217ENST00000636964 C8orf37Q96NL8 207 aa14□□□□□ -0.17
CLN6-217ENST00000636964 SASH1O94885 1247 aa13.99□□□□□ -0.17
CLN6-217ENST00000636964 GAS2L3Q86XJ1 694 aa13.99□□□□□ -0.17
CLN6-217ENST00000636964 GRPEL1Q9HAV7 217 aa13.99□□□□□ -0.17
CLN6-217ENST00000636964 CHMP3Q9Y3E7 222 aa13.99□□□□□ -0.17
CLN6-217ENST00000636964 LAMB4A4D0S4 1761 aa13.99□□□□□ -0.17
CLN6-217ENST00000636964 USP26Q9BXU7 913 aa13.99□□□□□ -0.17
CLN6-217ENST00000636964 PI4K2BQ8TCG2 481 aa13.98□□□□□ -0.17
CLN6-217ENST00000636964 CCDC8Q9H0W5 538 aaPredicted RBP13.98□□□□□ -0.17
CLN6-217ENST00000636964 STARD3NLO95772 234 aa13.98□□□□□ -0.17
CLN6-217ENST00000636964 MRE11P49959 708 aa13.98□□□□□ -0.17
CLN6-217ENST00000636964 AACSQ86V21 672 aa13.98□□□□□ -0.17
CLN6-217ENST00000636964 ARFGEF2Q9Y6D5 1785 aa13.98□□□□□ -0.17
CLN6-217ENST00000636964 PLCH1Q4KWH8 1693 aa13.98□□□□□ -0.17
CLN6-217ENST00000636964 BCL9O00512 1426 aa13.98□□□□□ -0.17
CLN6-217ENST00000636964 MARCH10Q8NA82 808 aaPredicted RBP13.98□□□□□ -0.17
CLN6-217ENST00000636964 NGLY1Q96IV0 654 aa13.98□□□□□ -0.17
CLN6-217ENST00000636964 CWC25Q9NXE8 425 aaPredicted RBP13.98□□□□□ -0.17
CLN6-217ENST00000636964 ITGB4P16144 1822 aa13.98□□□□□ -0.17
CLN6-217ENST00000636964 PAPPAQ13219 1627 aa13.98□□□□□ -0.17
CLN6-217ENST00000636964 AFDNP55196 1824 aaKnown RBP13.97□□□□□ -0.17
CLN6-217ENST00000636964 IFIT2P09913 472 aaKnown RBP13.97□□□□□ -0.17
CLN6-217ENST00000636964 CHRM1P11229 460 aaPredicted RBP13.97□□□□□ -0.17
CLN6-217ENST00000636964 LMBR1LQ6UX01 489 aa13.97□□□□□ -0.17
CLN6-217ENST00000636964 ERC2O15083 957 aa13.97□□□□□ -0.17
CLN6-217ENST00000636964 CD2BP2O95400 341 aaKnown RBP13.97□□□□□ -0.17
CLN6-217ENST00000636964 SPATA31A5Q5VU36 1347 aa13.97□□□□□ -0.17
CLN6-217ENST00000636964 SPATA31A7Q8IWB4 1347 aa13.97□□□□□ -0.17
CLN6-217ENST00000636964 CHMLP26374 656 aa13.97□□□□□ -0.17
CLN6-217ENST00000636964 CASP7P55210 303 aa13.97□□□□□ -0.17
CLN6-217ENST00000636964 HSCBQ8IWL3 235 aa13.97□□□□□ -0.17
CLN6-217ENST00000636964 EAF2Q96CJ1 260 aaPredicted RBP13.97□□□□□ -0.17
CLN6-217ENST00000636964 FAM98CQ17RN3 349 aaKnown RBP13.96□□□□□ -0.17
CLN6-217ENST00000636964 ERC1Q8IUD2 1116 aa13.96□□□□□ -0.17
CLN6-217ENST00000636964 TEX13AQ9BXU3 409 aaPredicted RBP13.96□□□□□ -0.17
CLN6-217ENST00000636964 H7C1W4 665 aa13.96□□□□□ -0.18
CLN6-217ENST00000636964 TLR7Q9NYK1 1049 aaKnown RBP13.96□□□□□ -0.18
CLN6-217ENST00000636964 KCNG1Q9UIX4 513 aa13.95□□□□□ -0.18
CLN6-217ENST00000636964 ZBTB1Q9Y2K1 713 aa13.95□□□□□ -0.18
CLN6-217ENST00000636964 CYP19A1P11511 503 aaPredicted RBP13.95□□□□□ -0.18
CLN6-217ENST00000636964 ESYT1Q9BSJ8 1104 aa13.95□□□□□ -0.18
CLN6-217ENST00000636964 THRAP3Q9Y2W1 955 aaKnown RBP13.95□□□□□ -0.18
CLN6-217ENST00000636964 REC8O95072 547 aa13.95□□□□□ -0.18
CLN6-217ENST00000636964 PTPN12Q05209 780 aaKnown RBP13.95□□□□□ -0.18
CLN6-217ENST00000636964 IL25Q9H293 177 aa13.95□□□□□ -0.18
CLN6-217ENST00000636964 GPTP24298 496 aa13.94□□□□□ -0.18
CLN6-217ENST00000636964 RFX5P48382 616 aaPredicted RBP13.94□□□□□ -0.18
CLN6-217ENST00000636964 FOXO4P98177 505 aa13.94□□□□□ -0.18
CLN6-217ENST00000636964 HLFQ16534 295 aa13.94□□□□□ -0.18
CLN6-217ENST00000636964 KIF6Q6ZMV9 814 aa13.94□□□□□ -0.18
CLN6-217ENST00000636964 CCDC85AQ96PX6 553 aaPredicted RBP13.94□□□□□ -0.18
CLN6-217ENST00000636964 CDCA7Q9BWT1 371 aaPredicted RBP13.94□□□□□ -0.18
CLN6-217ENST00000636964 AOX1Q06278 1338 aa13.94□□□□□ -0.18
CLN6-217ENST00000636964 KCNQ2O43526 872 aa13.94□□□□□ -0.18
CLN6-217ENST00000636964 PDCL3Q9H2J4 239 aa13.94□□□□□ -0.18
CLN6-217ENST00000636964 ANO2Q9NQ90 1003 aa13.94□□□□□ -0.18
CLN6-217ENST00000636964 FOXD4L1Q9NU39 408 aa13.94□□□□□ -0.18
CLN6-217ENST00000636964 TCIRG1Q13488 830 aa13.93□□□□□ -0.18
CLN6-217ENST00000636964 RABL6Q3YEC7 729 aaPredicted RBP13.93□□□□□ -0.18
CLN6-217ENST00000636964 CCDC191Q8NCU4 936 aa13.93□□□□□ -0.18
CLN6-217ENST00000636964 ECHDC1Q9NTX5 307 aa13.93□□□□□ -0.18
CLN6-217ENST00000636964 TBC1D2BQ9UPU7 963 aa13.93□□□□□ -0.18
CLN6-217ENST00000636964 TFCP2Q12800 502 aa13.93□□□□□ -0.18
CLN6-217ENST00000636964 SYNE4Q8N205 404 aa13.93□□□□□ -0.18
CLN6-217ENST00000636964 FAM89AQ96GI7 184 aa13.93□□□□□ -0.18
CLN6-217ENST00000636964 ZNF830Q96NB3 372 aaPredicted RBP13.93□□□□□ -0.18
CLN6-217ENST00000636964 VGLL3A8MV65 326 aa13.92□□□□□ -0.18
CLN6-217ENST00000636964 GLRX3O76003 335 aaKnown RBP13.92□□□□□ -0.18
CLN6-217ENST00000636964 ZNF594Q96JF6 807 aaPredicted RBP13.92□□□□□ -0.18
CLN6-217ENST00000636964 COPRSQ9NQ92 184 aa13.92□□□□□ -0.18
CLN6-217ENST00000636964 NRAPQ86VF7 1730 aa13.92□□□□□ -0.18
CLN6-217ENST00000636964 CNTROBQ8N137 903 aa13.92□□□□□ -0.18
CLN6-217ENST00000636964 ISCA1Q9BUE6 129 aa13.92□□□□□ -0.18
CLN6-217ENST00000636964 RNF216Q9NWF9 866 aaPredicted RBP13.92□□□□□ -0.18
CLN6-217ENST00000636964 SLIT2O94813 1529 aa13.92□□□□□ -0.18
CLN6-217ENST00000636964 DDIT3P35638 169 aa13.92□□□□□ -0.18
CLN6-217ENST00000636964 BOLA2Q9H3K6 86 aa13.92□□□□□ -0.18
CLN6-217ENST00000636964 TTC41PQ6P2S7 1318 aa13.91□□□□□ -0.18
CLN6-217ENST00000636964 ATP6V1AP38606 617 aa13.91□□□□□ -0.18
CLN6-217ENST00000636964 CWC27Q6UX04 472 aaKnown RBP13.91□□□□□ -0.18
CLN6-217ENST00000636964 GPATCH3Q96I76 525 aa13.91□□□□□ -0.18
CLN6-217ENST00000636964 TPM2P07951 284 aa13.91□□□□□ -0.18
CLN6-217ENST00000636964 KIAA1211Q6ZU35 1233 aa13.91□□□□□ -0.18
CLN6-217ENST00000636964 SNX21Q969T3 373 aa13.91□□□□□ -0.18
CLN6-217ENST00000636964 DOT1LQ8TEK3 1739 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 103.8 ms