RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 DNAJC2Q99543 621 aaKnown RBP15.49■□□□□ 0.07
CCDC88A-214ENST00000621814 LARP1Q6PKG0 1096 aaKnown RBP15.48■□□□□ 0.07
CCDC88A-214ENST00000621814 ADGRL3Q9HAR2 1447 aa15.48■□□□□ 0.07
CCDC88A-214ENST00000621814 TPCN1Q9ULQ1 816 aa15.48■□□□□ 0.07
CCDC88A-214ENST00000621814 R3HCC1Q9Y3T6 440 aaKnown RBP15.48■□□□□ 0.07
CCDC88A-214ENST00000621814 ERBB3P21860 1342 aa15.48■□□□□ 0.07
CCDC88A-214ENST00000621814 NEURL1BA8MQ27 555 aa15.47■□□□□ 0.07
CCDC88A-214ENST00000621814 TATP17735 454 aaPredicted RBP15.47■□□□□ 0.07
CCDC88A-214ENST00000621814 ANKRD13DQ6ZTN6 518 aa15.47■□□□□ 0.07
CCDC88A-214ENST00000621814 SLC52A2Q9HAB3 445 aa15.47■□□□□ 0.07
CCDC88A-214ENST00000621814 HCLS1P14317 486 aaPredicted RBP15.47■□□□□ 0.07
CCDC88A-214ENST00000621814 GCKRQ14397 625 aa15.47■□□□□ 0.07
CCDC88A-214ENST00000621814 NECTIN1Q15223 517 aa15.47■□□□□ 0.07
CCDC88A-214ENST00000621814 GIMAP6Q6P9H5 292 aa15.47■□□□□ 0.07
CCDC88A-214ENST00000621814 ZNF830Q96NB3 372 aaPredicted RBP15.47■□□□□ 0.07
CCDC88A-214ENST00000621814 PHF14O94880 888 aa15.47■□□□□ 0.07
CCDC88A-214ENST00000621814 VPS53Q5VIR6 699 aa15.47■□□□□ 0.07
CCDC88A-214ENST00000621814 LARP1BQ659C4 914 aaKnown RBP15.47■□□□□ 0.07
CCDC88A-214ENST00000621814 ZNF589Q86UQ0 364 aaPredicted RBP15.47■□□□□ 0.07
CCDC88A-214ENST00000621814 USP25Q9UHP3 1055 aa15.47■□□□□ 0.07
CCDC88A-214ENST00000621814 PDLIM2Q96JY6 352 aa15.46■□□□□ 0.07
CCDC88A-214ENST00000621814 ZSWIM6Q9HCJ5 1215 aa15.46■□□□□ 0.07
CCDC88A-214ENST00000621814 USP42Q9H9J4 1324 aaKnown RBP15.46■□□□□ 0.07
CCDC88A-214ENST00000621814 SLC27A2O14975 620 aa15.46■□□□□ 0.07
CCDC88A-214ENST00000621814 EPB41L2O43491 1005 aaKnown RBP15.46■□□□□ 0.07
CCDC88A-214ENST00000621814 NOL7Q9UMY1 257 aaKnown RBP15.46■□□□□ 0.07
CCDC88A-214ENST00000621814 TFCP2Q12800 502 aa15.45■□□□□ 0.06
CCDC88A-214ENST00000621814 CCDC129Q6ZRS4 1044 aa15.45■□□□□ 0.06
CCDC88A-214ENST00000621814 EIF2AK3Q9NZJ5 1116 aaKnown RBP15.45■□□□□ 0.06
CCDC88A-214ENST00000621814 CACNA1FO60840 1977 aa15.45■□□□□ 0.06
CCDC88A-214ENST00000621814 NPHP3Q7Z494 1330 aa15.45■□□□□ 0.06
CCDC88A-214ENST00000621814 A0A087WZG4 1122 aa15.45■□□□□ 0.06
CCDC88A-214ENST00000621814 PHKG2P15735 406 aa15.45■□□□□ 0.06
CCDC88A-214ENST00000621814 BLOC1S2Q6QNY1 142 aa15.45■□□□□ 0.06
CCDC88A-214ENST00000621814 IL17RAQ96F46 866 aa15.45■□□□□ 0.06
CCDC88A-214ENST00000621814 ATP6V1DQ9Y5K8 247 aa15.45■□□□□ 0.06
CCDC88A-214ENST00000621814 ST3GAL1Q11201 340 aa15.44■□□□□ 0.06
CCDC88A-214ENST00000621814 CCDC183Q5T5S1 534 aa15.44■□□□□ 0.06
CCDC88A-214ENST00000621814 MAP4K1Q92918 833 aa15.44■□□□□ 0.06
CCDC88A-214ENST00000621814 SEC62Q99442 399 aaKnown RBP15.44■□□□□ 0.06
CCDC88A-214ENST00000621814 MTMR6Q9Y217 621 aa15.44■□□□□ 0.06
CCDC88A-214ENST00000621814 ZNF330Q9Y3S2 320 aaPredicted RBP15.44■□□□□ 0.06
CCDC88A-214ENST00000621814 PPFIA3O75145 1194 aa15.44■□□□□ 0.06
CCDC88A-214ENST00000621814 ATF3P18847 181 aa15.44■□□□□ 0.06
CCDC88A-214ENST00000621814 UBE2HP62256 183 aa15.44■□□□□ 0.06
CCDC88A-214ENST00000621814 NEUROD6Q96NK8 337 aa15.44■□□□□ 0.06
CCDC88A-214ENST00000621814 FOSBP53539 338 aa15.43■□□□□ 0.06
CCDC88A-214ENST00000621814 CAMK4Q16566 473 aa15.43■□□□□ 0.06
CCDC88A-214ENST00000621814 SLFNL1Q499Z3 407 aa15.43■□□□□ 0.06
CCDC88A-214ENST00000621814 DDX46Q7L014 1031 aaKnown RBP15.43■□□□□ 0.06
CCDC88A-214ENST00000621814 METTL22Q9BUU2 404 aaPredicted RBP15.43■□□□□ 0.06
CCDC88A-214ENST00000621814 CABP4P57796 275 aa15.43■□□□□ 0.06
CCDC88A-214ENST00000621814 HSP90AA2PQ14568 343 aaPredicted RBP15.43■□□□□ 0.06
CCDC88A-214ENST00000621814 IFNL2Q8IZJ0 200 aa15.43■□□□□ 0.06
CCDC88A-214ENST00000621814 LRRC2Q9BYS8 371 aa15.43■□□□□ 0.06
CCDC88A-214ENST00000621814 TFIP11Q9UBB9 837 aaKnown RBP15.43■□□□□ 0.06
CCDC88A-214ENST00000621814 CCDC39Q9UFE4 941 aa15.43■□□□□ 0.06
CCDC88A-214ENST00000621814 TUBGCP6Q96RT7 1819 aa15.43■□□□□ 0.06
CCDC88A-214ENST00000621814 PSMA5P28066 241 aa15.42■□□□□ 0.06
CCDC88A-214ENST00000621814 RNF20Q5VTR2 975 aa15.42■□□□□ 0.06
CCDC88A-214ENST00000621814 CDC37L1Q7L3B6 337 aa15.42■□□□□ 0.06
CCDC88A-214ENST00000621814 ZSCAN31Q96LW9 406 aaPredicted RBP15.42■□□□□ 0.06
CCDC88A-214ENST00000621814 DBNLQ9UJU6 430 aaKnown RBP15.42■□□□□ 0.06
CCDC88A-214ENST00000621814 ZKSCAN5Q9Y2L8 839 aa15.42■□□□□ 0.06
CCDC88A-214ENST00000621814 HSP90B1P14625 803 aaKnown RBP15.42■□□□□ 0.06
CCDC88A-214ENST00000621814 FGD1P98174 961 aa15.42■□□□□ 0.06
CCDC88A-214ENST00000621814 RBM10P98175 930 aaKnown RBP15.42■□□□□ 0.06
CCDC88A-214ENST00000621814 MED1Q15648 1581 aaPredicted RBP15.42■□□□□ 0.06
CCDC88A-214ENST00000621814 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.42■□□□□ 0.06
CCDC88A-214ENST00000621814 HIP1O00291 1037 aa15.42■□□□□ 0.06
CCDC88A-214ENST00000621814 OFD1O75665 1012 aa15.42■□□□□ 0.06
CCDC88A-214ENST00000621814 SNRPA1P09661 255 aaKnown RBP15.42■□□□□ 0.06
CCDC88A-214ENST00000621814 DBNDD2Q9BQY9 259 aa15.42■□□□□ 0.06
CCDC88A-214ENST00000621814 SH2B1Q9NRF2 756 aaPredicted RBP15.42■□□□□ 0.06
CCDC88A-214ENST00000621814 NAP1L2Q9ULW6 460 aaPredicted RBP15.42■□□□□ 0.06
CCDC88A-214ENST00000621814 NPHP4O75161 1426 aaPredicted RBP15.41■□□□□ 0.06
CCDC88A-214ENST00000621814 HEG1Q9ULI3 1381 aa15.41■□□□□ 0.06
CCDC88A-214ENST00000621814 DNTTIP2Q5QJE6 756 aaKnown RBP15.41■□□□□ 0.06
CCDC88A-214ENST00000621814 C19orf44Q9H6X5 657 aa15.41■□□□□ 0.06
CCDC88A-214ENST00000621814 CYP27B1O15528 508 aa15.41■□□□□ 0.06
CCDC88A-214ENST00000621814 LMBR1LQ6UX01 489 aa15.4■□□□□ 0.06
CCDC88A-214ENST00000621814 PDZRN4Q6ZMN7 1036 aaPredicted RBP15.4■□□□□ 0.06
CCDC88A-214ENST00000621814 DDX11Q96FC9 970 aa15.4■□□□□ 0.06
CCDC88A-214ENST00000621814 TCHHQ07283 1943 aa15.4■□□□□ 0.06
CCDC88A-214ENST00000621814 KDM3BQ7LBC6 1761 aa15.4■□□□□ 0.06
CCDC88A-214ENST00000621814 ADCY5O95622 1261 aa15.4■□□□□ 0.06
CCDC88A-214ENST00000621814 TNNI3KQ59H18 835 aa15.4■□□□□ 0.06
CCDC88A-214ENST00000621814 TM6SF1Q9BZW5 370 aa15.4■□□□□ 0.06
CCDC88A-214ENST00000621814 FPGT-TNNI3KV9GXZ4 949 aa15.4■□□□□ 0.06
CCDC88A-214ENST00000621814 NCAPD2Q15021 1401 aa15.4■□□□□ 0.06
CCDC88A-214ENST00000621814 PTPN12Q05209 780 aaKnown RBP15.4■□□□□ 0.06
CCDC88A-214ENST00000621814 HS1BP3Q53T59 392 aa15.4■□□□□ 0.06
CCDC88A-214ENST00000621814 FMNL2Q96PY5 1086 aa15.4■□□□□ 0.06
CCDC88A-214ENST00000621814 ARID3AQ99856 593 aa15.39■□□□□ 0.05
CCDC88A-214ENST00000621814 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.39■□□□□ 0.05
CCDC88A-214ENST00000621814 CHD2O14647 1828 aaKnown RBP15.39■□□□□ 0.05
CCDC88A-214ENST00000621814 UTYO14607 1347 aa15.39■□□□□ 0.05
CCDC88A-214ENST00000621814 GOLGA6L4A6NEF3 574 aa15.39■□□□□ 0.05
CCDC88A-214ENST00000621814 CEBPZQ03701 1054 aaKnown RBP15.39■□□□□ 0.05
CCDC88A-214ENST00000621814 C17orf53Q8N3J3 647 aaPredicted RBP15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms