RNA–Protein interactions for RNA: ENST00000618939.4

CNOT3-210, Transcript of CCR4-NOT transcription complex subunit 3, humanhuman

TSL 5

Gene CNOT3, Length 4,516 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT3-210ENST00000618939 ZNF213O14771 459 aa16.27■□□□□ 0.2
CNOT3-210ENST00000618939 PIP4K2AP48426 406 aaPredicted RBP16.27■□□□□ 0.2
CNOT3-210ENST00000618939 DDX21Q9NR30 783 aaKnown RBP eCLIP16.27■□□□□ 0.2
CNOT3-210ENST00000618939 A0A0U1RQG5 324 aaPredicted RBP16.27■□□□□ 0.2
CNOT3-210ENST00000618939 NFATC2IPQ8NCF5 419 aa16.27■□□□□ 0.2
CNOT3-210ENST00000618939 UBAC1Q9BSL1 405 aa16.27■□□□□ 0.2
CNOT3-210ENST00000618939 NBPF7P0C2Y1 421 aaPredicted RBP16.27■□□□□ 0.2
CNOT3-210ENST00000618939 CREB3L3Q68CJ9 461 aa16.27■□□□□ 0.2
CNOT3-210ENST00000618939 ANTXR1Q9H6X2 564 aa16.27■□□□□ 0.2
CNOT3-210ENST00000618939 GOLGA8BA8MQT2 603 aa16.27■□□□□ 0.19
CNOT3-210ENST00000618939 ZNF165P49910 485 aa16.27■□□□□ 0.19
CNOT3-210ENST00000618939 RRAGDQ9NQL2 400 aaPredicted RBP16.27■□□□□ 0.19
CNOT3-210ENST00000618939 LRP2BPQ9P2M1 347 aa16.27■□□□□ 0.19
CNOT3-210ENST00000618939 CLSTN1O94985 981 aa16.26■□□□□ 0.19
CNOT3-210ENST00000618939 SLC3A2P08195 630 aaKnown RBP16.26■□□□□ 0.19
CNOT3-210ENST00000618939 SGSM2O43147 1006 aa16.26■□□□□ 0.19
CNOT3-210ENST00000618939 CPA1P15085 419 aa16.26■□□□□ 0.19
CNOT3-210ENST00000618939 SYT1P21579 422 aa16.26■□□□□ 0.19
CNOT3-210ENST00000618939 FSIP1Q8NA03 581 aa16.26■□□□□ 0.19
CNOT3-210ENST00000618939 LRRC2Q9BYS8 371 aa16.26■□□□□ 0.19
CNOT3-210ENST00000618939 ZKSCAN5Q9Y2L8 839 aa16.26■□□□□ 0.19
CNOT3-210ENST00000618939 FILIP1LQ4L180 1135 aa16.26■□□□□ 0.19
CNOT3-210ENST00000618939 CADPS2Q86UW7 1296 aa16.26■□□□□ 0.19
CNOT3-210ENST00000618939 BICC1Q9H694 974 aaKnown RBP16.26■□□□□ 0.19
CNOT3-210ENST00000618939 CCDC171Q6TFL3 1326 aa16.25■□□□□ 0.19
CNOT3-210ENST00000618939 SMTNL1A8MU46 457 aa16.25■□□□□ 0.19
CNOT3-210ENST00000618939 RAD21O60216 631 aa16.25■□□□□ 0.19
CNOT3-210ENST00000618939 PPFIA3O75145 1194 aa16.25■□□□□ 0.19
CNOT3-210ENST00000618939 HAND2P61296 217 aa16.25■□□□□ 0.19
CNOT3-210ENST00000618939 MCMDC2Q4G0Z9 681 aa16.25■□□□□ 0.19
CNOT3-210ENST00000618939 ZSCAN16Q9H4T2 348 aaPredicted RBP16.25■□□□□ 0.19
CNOT3-210ENST00000618939 ABCA6Q8N139 1617 aa16.25■□□□□ 0.19
CNOT3-210ENST00000618939 WASF1Q92558 559 aa16.25■□□□□ 0.19
CNOT3-210ENST00000618939 CLIP2Q9UDT6 1046 aa16.25■□□□□ 0.19
CNOT3-210ENST00000618939 DACH1Q9UI36 760 aa16.25■□□□□ 0.19
CNOT3-210ENST00000618939 CBFA2T2O43439 604 aa16.25■□□□□ 0.19
CNOT3-210ENST00000618939 GPTP24298 496 aa16.25■□□□□ 0.19
CNOT3-210ENST00000618939 HSP90AB3PQ58FF7 597 aa16.25■□□□□ 0.19
CNOT3-210ENST00000618939 IL17REQ8NFR9 667 aa16.25■□□□□ 0.19
CNOT3-210ENST00000618939 USP44Q9H0E7 712 aa16.25■□□□□ 0.19
CNOT3-210ENST00000618939 TRMT112Q9UI30 125 aaKnown RBP16.25■□□□□ 0.19
CNOT3-210ENST00000618939 ARHGAP31Q2M1Z3 1444 aa16.25■□□□□ 0.19
CNOT3-210ENST00000618939 IGHMBP2P38935 993 aaKnown RBP16.24■□□□□ 0.19
CNOT3-210ENST00000618939 NAPBQ9H115 298 aa16.24■□□□□ 0.19
CNOT3-210ENST00000618939 HS1BP3Q53T59 392 aa16.24■□□□□ 0.19
CNOT3-210ENST00000618939 LDHAL6AQ6ZMR3 332 aa16.24■□□□□ 0.19
CNOT3-210ENST00000618939 RAI14Q9P0K7 980 aa16.24■□□□□ 0.19
CNOT3-210ENST00000618939 RAD50Q92878 1312 aa16.24■□□□□ 0.19
CNOT3-210ENST00000618939 SIRT2Q8IXJ6 389 aa16.24■□□□□ 0.19
CNOT3-210ENST00000618939 RBSNQ9H1K0 784 aa16.24■□□□□ 0.19
CNOT3-210ENST00000618939 ANKRD18BA2A2Z9 1011 aa16.24■□□□□ 0.19
CNOT3-210ENST00000618939 TXLNAP40222 546 aa16.24■□□□□ 0.19
CNOT3-210ENST00000618939 NBPF6Q5VWK0 638 aa16.24■□□□□ 0.19
CNOT3-210ENST00000618939 RUFY3Q7L099 469 aa16.24■□□□□ 0.19
CNOT3-210ENST00000618939 NBPF4Q96M43 638 aa16.24■□□□□ 0.19
CNOT3-210ENST00000618939 LMBRD1Q9NUN5 540 aa16.24■□□□□ 0.19
CNOT3-210ENST00000618939 ABCF2Q9UG63 623 aa16.24■□□□□ 0.19
CNOT3-210ENST00000618939 USP16Q9Y5T5 823 aa16.24■□□□□ 0.19
CNOT3-210ENST00000618939 SNX14Q9Y5W7 946 aa16.24■□□□□ 0.19
CNOT3-210ENST00000618939 CCDC70Q6NSX1 233 aa16.23■□□□□ 0.19
CNOT3-210ENST00000618939 ZNF445P59923 1031 aa16.23■□□□□ 0.19
CNOT3-210ENST00000618939 EIF4A1P60842 406 aaKnown RBP16.23■□□□□ 0.19
CNOT3-210ENST00000618939 TEX35Q5T0J7 233 aa16.23■□□□□ 0.19
CNOT3-210ENST00000618939 Q6ZUG5 572 aa16.23■□□□□ 0.19
CNOT3-210ENST00000618939 NOC3LQ8WTT2 800 aaKnown RBP16.23■□□□□ 0.19
CNOT3-210ENST00000618939 DACT1Q9NYF0 836 aa16.23■□□□□ 0.19
CNOT3-210ENST00000618939 ORC3Q9UBD5 711 aaPredicted RBP16.23■□□□□ 0.19
CNOT3-210ENST00000618939 IL15P40933 162 aaPredicted RBP16.22■□□□□ 0.19
CNOT3-210ENST00000618939 CCAR1Q8IX12 1150 aaKnown RBP16.22■□□□□ 0.19
CNOT3-210ENST00000618939 FAM200AQ8TCP9 573 aa16.22■□□□□ 0.19
CNOT3-210ENST00000618939 SSH3Q8TE77 659 aa16.22■□□□□ 0.19
CNOT3-210ENST00000618939 PRR36Q9H6K5 1346 aa16.22■□□□□ 0.19
CNOT3-210ENST00000618939 CAVIN2O95810 425 aa16.22■□□□□ 0.19
CNOT3-210ENST00000618939 MAP3K12Q12852 859 aa16.22■□□□□ 0.19
CNOT3-210ENST00000618939 GLI2P10070 1586 aa16.22■□□□□ 0.19
CNOT3-210ENST00000618939 NPHP3Q7Z494 1330 aa16.22■□□□□ 0.19
CNOT3-210ENST00000618939 CDK12Q9NYV4 1490 aaPredicted RBP16.22■□□□□ 0.19
CNOT3-210ENST00000618939 ZNF830Q96NB3 372 aaPredicted RBP16.22■□□□□ 0.19
CNOT3-210ENST00000618939 NOL7Q9UMY1 257 aaKnown RBP16.22■□□□□ 0.19
CNOT3-210ENST00000618939 SFPQP23246 707 aaKnown RBP eCLIP16.21■□□□□ 0.19
CNOT3-210ENST00000618939 STX1AQ16623 288 aa16.21■□□□□ 0.19
CNOT3-210ENST00000618939 CFAP100Q494V2 611 aa16.21■□□□□ 0.19
CNOT3-210ENST00000618939 TEX13AQ9BXU3 409 aaPredicted RBP16.21■□□□□ 0.19
CNOT3-210ENST00000618939 ADGRB3O60242 1522 aa16.21■□□□□ 0.19
CNOT3-210ENST00000618939 ZCRB1Q8TBF4 217 aaKnown RBP16.21■□□□□ 0.19
CNOT3-210ENST00000618939 HSPA4P34932 840 aa16.21■□□□□ 0.19
CNOT3-210ENST00000618939 CD2BP2O95400 341 aaKnown RBP16.2■□□□□ 0.18
CNOT3-210ENST00000618939 TFCP2Q12800 502 aa16.2■□□□□ 0.18
CNOT3-210ENST00000618939 CABLES1Q8TDN4 633 aa16.2■□□□□ 0.18
CNOT3-210ENST00000618939 ZNF790Q6PG37 636 aa16.2■□□□□ 0.18
CNOT3-210ENST00000618939 NCOA7Q8NI08 942 aa16.2■□□□□ 0.18
CNOT3-210ENST00000618939 SMARCE1Q969G3 411 aa16.2■□□□□ 0.18
CNOT3-210ENST00000618939 PTPN14Q15678 1187 aa16.2■□□□□ 0.18
CNOT3-210ENST00000618939 TTLL5Q6EMB2 1281 aa16.2■□□□□ 0.18
CNOT3-210ENST00000618939 DCAF5Q96JK2 942 aa16.2■□□□□ 0.18
CNOT3-210ENST00000618939 POLR3DP05423 398 aaPredicted RBP16.2■□□□□ 0.18
CNOT3-210ENST00000618939 RAB11FIP4Q86YS3 637 aa16.2■□□□□ 0.18
CNOT3-210ENST00000618939 C19orf44Q9H6X5 657 aa16.2■□□□□ 0.18
CNOT3-210ENST00000618939 PTCH1Q13635 1447 aa16.2■□□□□ 0.18
CNOT3-210ENST00000618939 ROBO2Q9HCK4 1378 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 78.8 ms