RNA–Protein interactions for RNA: ENST00000616395.4

TRAPPC3-209, Transcript of trafficking protein particle complex 3, humanhuman

TSL 3 BASIC

Gene TRAPPC3, Length 1,336 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC3-209ENST00000616395 USP50Q70EL3 339 aaPredicted RBP23.57■■□□□ 1.36
TRAPPC3-209ENST00000616395 CA12O43570 354 aa23.56■■□□□ 1.36
TRAPPC3-209ENST00000616395 BTBD11A6QL63 1104 aa23.55■■□□□ 1.36
TRAPPC3-209ENST00000616395 DGKZQ13574 1117 aa23.55■■□□□ 1.36
TRAPPC3-209ENST00000616395 GAS2L2Q8NHY3 880 aa23.55■■□□□ 1.36
TRAPPC3-209ENST00000616395 SAPCD2Q86UD0 394 aa23.54■■□□□ 1.36
TRAPPC3-209ENST00000616395 TRPM7Q96QT4 1865 aa23.54■■□□□ 1.36
TRAPPC3-209ENST00000616395 GTF2E1P29083 439 aaPredicted RBP23.53■■□□□ 1.36
TRAPPC3-209ENST00000616395 LARGE2Q8N3Y3 721 aa23.53■■□□□ 1.36
TRAPPC3-209ENST00000616395 CEMIPQ8WUJ3 1361 aa23.52■■□□□ 1.36
TRAPPC3-209ENST00000616395 BRPF1P55201 1214 aaPredicted RBP23.52■■□□□ 1.36
TRAPPC3-209ENST00000616395 CC2D2BQ6DHV5 1058 aa23.52■■□□□ 1.36
TRAPPC3-209ENST00000616395 CELF2O95319 508 aaKnown RBP23.51■■□□□ 1.35
TRAPPC3-209ENST00000616395 CRY2Q49AN0 593 aa23.51■■□□□ 1.35
TRAPPC3-209ENST00000616395 NBPF26B4DH59 902 aa23.5■■□□□ 1.35
TRAPPC3-209ENST00000616395 HLFQ16534 295 aa23.5■■□□□ 1.35
TRAPPC3-209ENST00000616395 NBPF10Q6P3W6 841 aaKnown RBP23.5■■□□□ 1.35
TRAPPC3-209ENST00000616395 SLC51AQ86UW1 340 aa23.5■■□□□ 1.35
TRAPPC3-209ENST00000616395 NBPF15Q8N660 670 aa23.5■■□□□ 1.35
TRAPPC3-209ENST00000616395 CASP8AP2Q9UKL3 1982 aa23.49■■□□□ 1.35
TRAPPC3-209ENST00000616395 ABCC12Q96J65 1359 aa23.49■■□□□ 1.35
TRAPPC3-209ENST00000616395 U2SURPO15042 1029 aaKnown RBP23.49■■□□□ 1.35
TRAPPC3-209ENST00000616395 RGL2O15211 777 aa23.49■■□□□ 1.35
TRAPPC3-209ENST00000616395 HHIPL1Q96JK4 782 aa23.49■■□□□ 1.35
TRAPPC3-209ENST00000616395 ADARB2Q9NS39 739 aaKnown RBP23.49■■□□□ 1.35
TRAPPC3-209ENST00000616395 SNRPA1P09661 255 aaKnown RBP23.48■■□□□ 1.35
TRAPPC3-209ENST00000616395 CIAPIN1Q6FI81 312 aa23.48■■□□□ 1.35
TRAPPC3-209ENST00000616395 NIM1KQ8IY84 436 aa23.48■■□□□ 1.35
TRAPPC3-209ENST00000616395 GPRC5DQ9NZD1 345 aa23.48■■□□□ 1.35
TRAPPC3-209ENST00000616395 NUTM1Q86Y26 1132 aa23.47■■□□□ 1.35
TRAPPC3-209ENST00000616395 GLIS2Q9BZE0 524 aaPredicted RBP23.47■■□□□ 1.35
TRAPPC3-209ENST00000616395 RPGRQ92834 1020 aaKnown RBP23.46■■□□□ 1.35
TRAPPC3-209ENST00000616395 HOXA10P31260 410 aaPredicted RBP23.45■■□□□ 1.34
TRAPPC3-209ENST00000616395 GRIPAP1Q4V328 841 aa23.45■■□□□ 1.34
TRAPPC3-209ENST00000616395 ZNF408Q9H9D4 720 aa23.45■■□□□ 1.34
TRAPPC3-209ENST00000616395 COL3A1P02461 1466 aaPredicted RBP23.45■■□□□ 1.34
TRAPPC3-209ENST00000616395 TCERG1O14776 1098 aaKnown RBP23.44■■□□□ 1.34
TRAPPC3-209ENST00000616395 SOX10P56693 466 aa23.43■■□□□ 1.34
TRAPPC3-209ENST00000616395 PHACTR3Q96KR7 559 aa23.43■■□□□ 1.34
TRAPPC3-209ENST00000616395 ZIC5Q96T25 663 aa23.43■■□□□ 1.34
TRAPPC3-209ENST00000616395 NYXQ9GZU5 481 aa23.43■■□□□ 1.34
TRAPPC3-209ENST00000616395 PPEF1O14829 653 aaPredicted RBP23.42■■□□□ 1.34
TRAPPC3-209ENST00000616395 PPIP5K2O43314 1243 aa23.42■■□□□ 1.34
TRAPPC3-209ENST00000616395 CC2D1BQ5T0F9 858 aaKnown RBP23.42■■□□□ 1.34
TRAPPC3-209ENST00000616395 NPC1L1Q9UHC9 1359 aa23.41■■□□□ 1.34
TRAPPC3-209ENST00000616395 CXCL9Q07325 125 aa23.41■■□□□ 1.34
TRAPPC3-209ENST00000616395 AOC3Q16853 763 aa23.41■■□□□ 1.34
TRAPPC3-209ENST00000616395 PGAP2Q9UHJ9 254 aa23.41■■□□□ 1.34
TRAPPC3-209ENST00000616395 GMPSP49915 693 aaPredicted RBP23.4■■□□□ 1.34
TRAPPC3-209ENST00000616395 NOGQ13253 232 aa23.4■■□□□ 1.34
TRAPPC3-209ENST00000616395 RIC1Q4ADV7 1423 aa23.4■■□□□ 1.34
TRAPPC3-209ENST00000616395 CRAMP1Q96RY5 1269 aa23.39■■□□□ 1.34
TRAPPC3-209ENST00000616395 PRKAR2BP31323 418 aa23.38■■□□□ 1.33
TRAPPC3-209ENST00000616395 MCM10Q7L590 875 aa23.38■■□□□ 1.33
TRAPPC3-209ENST00000616395 NGEFQ8N5V2 710 aa23.38■■□□□ 1.33
TRAPPC3-209ENST00000616395 RBM17Q96I25 401 aaKnown RBP23.38■■□□□ 1.33
TRAPPC3-209ENST00000616395 ZNRF3Q9ULT6 936 aa23.38■■□□□ 1.33
TRAPPC3-209ENST00000616395 PDE4DIPQ5VU43 2346 aa23.38■■□□□ 1.33
TRAPPC3-209ENST00000616395 HIRAP54198 1017 aaPredicted RBP23.37■■□□□ 1.33
TRAPPC3-209ENST00000616395 C3orf67Q6ZVT6 689 aa23.36■■□□□ 1.33
TRAPPC3-209ENST00000616395 CDC37L1Q7L3B6 337 aa23.36■■□□□ 1.33
TRAPPC3-209ENST00000616395 ZC3H15Q8WU90 426 aaKnown RBP23.36■■□□□ 1.33
TRAPPC3-209ENST00000616395 ERVV-1B6SEH8 477 aa23.35■■□□□ 1.33
TRAPPC3-209ENST00000616395 PER1O15534 1290 aaPredicted RBP23.35■■□□□ 1.33
TRAPPC3-209ENST00000616395 GPTP24298 496 aa23.35■■□□□ 1.33
TRAPPC3-209ENST00000616395 HUNKP57058 714 aa23.35■■□□□ 1.33
TRAPPC3-209ENST00000616395 PRPF38BQ5VTL8 546 aaKnown RBP23.35■■□□□ 1.33
TRAPPC3-209ENST00000616395 VPS33BQ9H267 617 aa23.35■■□□□ 1.33
TRAPPC3-209ENST00000616395 UBN2Q6ZU65 1347 aa23.35■■□□□ 1.33
TRAPPC3-209ENST00000616395 CNGB1Q14028 1251 aaPredicted RBP23.34■■□□□ 1.33
TRAPPC3-209ENST00000616395 SUSD4Q5VX71 490 aa23.34■■□□□ 1.33
TRAPPC3-209ENST00000616395 TRPM4Q8TD43 1214 aa23.34■■□□□ 1.33
TRAPPC3-209ENST00000616395 RSPH6AQ9H0K4 717 aa23.34■■□□□ 1.33
TRAPPC3-209ENST00000616395 DLK2Q6UY11 383 aa23.33■■□□□ 1.33
TRAPPC3-209ENST00000616395 RTF1Q92541 710 aaKnown RBP23.33■■□□□ 1.33
TRAPPC3-209ENST00000616395 BCL2L13Q9BXK5 485 aa23.33■■□□□ 1.33
TRAPPC3-209ENST00000616395 ATP6V0A2Q9Y487 856 aa23.33■■□□□ 1.33
TRAPPC3-209ENST00000616395 MAP3K15Q6ZN16 1313 aa23.33■■□□□ 1.33
TRAPPC3-209ENST00000616395 RAD17O75943 681 aa23.33■■□□□ 1.32
TRAPPC3-209ENST00000616395 DCTN1Q14203 1278 aa23.33■■□□□ 1.32
TRAPPC3-209ENST00000616395 USP48Q86UV5 1035 aa23.33■■□□□ 1.32
TRAPPC3-209ENST00000616395 TMX4Q9H1E5 349 aaPredicted RBP23.33■■□□□ 1.32
TRAPPC3-209ENST00000616395 CDHR2Q9BYE9 1310 aa23.32■■□□□ 1.32
TRAPPC3-209ENST00000616395 IBTKQ9P2D0 1353 aaPredicted RBP23.32■■□□□ 1.32
TRAPPC3-209ENST00000616395 FAM155AB1AL88 458 aaPredicted RBP23.32■■□□□ 1.32
TRAPPC3-209ENST00000616395 TTLL7Q6ZT98 887 aa23.32■■□□□ 1.32
TRAPPC3-209ENST00000616395 SUPT20HQ8NEM7 779 aa23.32■■□□□ 1.32
TRAPPC3-209ENST00000616395 SAGE1Q9NXZ1 904 aa23.32■■□□□ 1.32
TRAPPC3-209ENST00000616395 SHTN1A0MZ66 631 aa23.31■■□□□ 1.32
TRAPPC3-209ENST00000616395 RTFDC1Q9BY42 306 aaPredicted RBP23.31■■□□□ 1.32
TRAPPC3-209ENST00000616395 NUP98P52948 1817 aa23.3■■□□□ 1.32
TRAPPC3-209ENST00000616395 NTSR2O95665 410 aa23.3■■□□□ 1.32
TRAPPC3-209ENST00000616395 TNIP1Q15025 636 aa23.3■■□□□ 1.32
TRAPPC3-209ENST00000616395 RGMBQ6NW40 437 aa23.3■■□□□ 1.32
TRAPPC3-209ENST00000616395 KIF6Q6ZMV9 814 aa23.3■■□□□ 1.32
TRAPPC3-209ENST00000616395 ZBTB3Q9H5J0 574 aa23.3■■□□□ 1.32
TRAPPC3-209ENST00000616395 CNOT7Q9UIV1 285 aaKnown RBP23.3■■□□□ 1.32
TRAPPC3-209ENST00000616395 TRPA1O75762 1119 aa23.29■■□□□ 1.32
TRAPPC3-209ENST00000616395 KIF23Q02241 960 aaPredicted RBP23.29■■□□□ 1.32
TRAPPC3-209ENST00000616395 DDX10Q13206 875 aaKnown RBP23.29■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms