RNA–Protein interactions for RNA: ENST00000611712.4

LIG4-204, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 4 BASIC

Gene LIG4, Length 4,180 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-204ENST00000611712 UVSSAQ2YD98 709 aa10.25□□□□□ -0.77
LIG4-204ENST00000611712 VPS53Q5VIR6 699 aa10.25□□□□□ -0.77
LIG4-204ENST00000611712 KLHDC4Q8TBB5 520 aa10.25□□□□□ -0.77
LIG4-204ENST00000611712 GPT2Q8TD30 523 aa10.25□□□□□ -0.77
LIG4-204ENST00000611712 NAT10Q9H0A0 1025 aaKnown RBP10.25□□□□□ -0.77
LIG4-204ENST00000611712 CCDC171Q6TFL3 1326 aa10.25□□□□□ -0.77
LIG4-204ENST00000611712 PPFIA3O75145 1194 aa10.25□□□□□ -0.77
LIG4-204ENST00000611712 GADD45BO75293 160 aaPredicted RBP10.25□□□□□ -0.77
LIG4-204ENST00000611712 HS1BP3Q53T59 392 aa10.25□□□□□ -0.77
LIG4-204ENST00000611712 KIF6Q6ZMV9 814 aa10.25□□□□□ -0.77
LIG4-204ENST00000611712 MTERF4Q7Z6M4 381 aaKnown RBP10.25□□□□□ -0.77
LIG4-204ENST00000611712 CCDC34Q96HJ3 373 aa10.25□□□□□ -0.77
LIG4-204ENST00000611712 ZBTB3Q9H5J0 574 aa10.25□□□□□ -0.77
LIG4-204ENST00000611712 HMG20BQ9P0W2 317 aa10.25□□□□□ -0.77
LIG4-204ENST00000611712 BEND3Q5T5X7 828 aa10.25□□□□□ -0.77
LIG4-204ENST00000611712 LRRC2Q9BYS8 371 aa10.25□□□□□ -0.77
LIG4-204ENST00000611712 GTF2E1P29083 439 aaPredicted RBP10.24□□□□□ -0.77
LIG4-204ENST00000611712 GUCY1B3Q02153 619 aa10.24□□□□□ -0.77
LIG4-204ENST00000611712 TPD52L1Q16890 204 aaPredicted RBP10.24□□□□□ -0.77
LIG4-204ENST00000611712 RUFY3Q7L099 469 aa10.24□□□□□ -0.77
LIG4-204ENST00000611712 FAM227BQ96M60 508 aa10.24□□□□□ -0.77
LIG4-204ENST00000611712 CNNM1Q9NRU3 951 aa10.24□□□□□ -0.77
LIG4-204ENST00000611712 FAM177BA6PVY3 158 aa10.24□□□□□ -0.77
LIG4-204ENST00000611712 CCT2P78371 535 aaKnown RBP10.24□□□□□ -0.77
LIG4-204ENST00000611712 BRF1Q92994 677 aa10.24□□□□□ -0.77
LIG4-204ENST00000611712 COL3A1P02461 1466 aaPredicted RBP10.24□□□□□ -0.77
LIG4-204ENST00000611712 AKAP17AQ02040 695 aaKnown RBP10.24□□□□□ -0.77
LIG4-204ENST00000611712 LMBR1LQ6UX01 489 aa10.24□□□□□ -0.77
LIG4-204ENST00000611712 SUCLG2Q96I99 432 aa10.24□□□□□ -0.77
LIG4-204ENST00000611712 MYO3AQ8NEV4 1616 aa10.23□□□□□ -0.77
LIG4-204ENST00000611712 OFD1O75665 1012 aa10.23□□□□□ -0.77
LIG4-204ENST00000611712 CTNNA3Q9UI47 895 aa10.23□□□□□ -0.77
LIG4-204ENST00000611712 TBC1D2BQ9UPU7 963 aa10.23□□□□□ -0.77
LIG4-204ENST00000611712 CD163L1Q9NR16 1453 aa10.23□□□□□ -0.77
LIG4-204ENST00000611712 NLRP1Q9C000 1473 aa10.23□□□□□ -0.77
LIG4-204ENST00000611712 PPP1R9BQ96SB3 815 aa10.23□□□□□ -0.77
LIG4-204ENST00000611712 SSH2Q76I76 1423 aa10.22□□□□□ -0.77
LIG4-204ENST00000611712 GIGYF1O75420 1035 aaPredicted RBP10.22□□□□□ -0.77
LIG4-204ENST00000611712 HMGB1P09429 215 aaKnown RBP10.22□□□□□ -0.77
LIG4-204ENST00000611712 ZNF790Q6PG37 636 aa10.22□□□□□ -0.77
LIG4-204ENST00000611712 CABLES1Q8TDN4 633 aa10.22□□□□□ -0.77
LIG4-204ENST00000611712 TTC12Q9H892 705 aaPredicted RBP10.22□□□□□ -0.77
LIG4-204ENST00000611712 SNRKQ9NRH2 765 aa10.22□□□□□ -0.77
LIG4-204ENST00000611712 DDX19AQ9NUU7 478 aaKnown RBP10.22□□□□□ -0.77
LIG4-204ENST00000611712 NOL7Q9UMY1 257 aaKnown RBP10.22□□□□□ -0.77
LIG4-204ENST00000611712 EPB41L2O43491 1005 aaKnown RBP10.22□□□□□ -0.77
LIG4-204ENST00000611712 FILIP1Q7Z7B0 1213 aa10.22□□□□□ -0.77
LIG4-204ENST00000611712 CREBRFQ8IUR6 639 aa10.22□□□□□ -0.77
LIG4-204ENST00000611712 RASEFQ8IZ41 740 aa10.22□□□□□ -0.77
LIG4-204ENST00000611712 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.22□□□□□ -0.77
LIG4-204ENST00000611712 CPS1P31327 1500 aa10.22□□□□□ -0.77
LIG4-204ENST00000611712 PTH1RQ03431 593 aa10.22□□□□□ -0.77
LIG4-204ENST00000611712 IMMTQ16891 758 aaKnown RBP10.22□□□□□ -0.77
LIG4-204ENST00000611712 HOMER1Q86YM7 354 aa10.22□□□□□ -0.77
LIG4-204ENST00000611712 DACT1Q9NYF0 836 aa10.22□□□□□ -0.77
LIG4-204ENST00000611712 SMC2O95347 1197 aa10.22□□□□□ -0.77
LIG4-204ENST00000611712 TFCP2Q12800 502 aa10.22□□□□□ -0.77
LIG4-204ENST00000611712 SAFBQ15424 915 aaKnown RBP eCLIP10.22□□□□□ -0.77
LIG4-204ENST00000611712 FAM173BQ6P4H8 233 aa10.22□□□□□ -0.77
LIG4-204ENST00000611712 CWC25Q9NXE8 425 aaPredicted RBP10.22□□□□□ -0.77
LIG4-204ENST00000611712 CUL4AQ13619 759 aa10.21□□□□□ -0.77
LIG4-204ENST00000611712 PROSER3Q2NL68 480 aa10.21□□□□□ -0.78
LIG4-204ENST00000611712 MCMDC2Q4G0Z9 681 aa10.21□□□□□ -0.78
LIG4-204ENST00000611712 Q6ZUG5 572 aa10.21□□□□□ -0.78
LIG4-204ENST00000611712 ARHGEF28Q8N1W1 1705 aaKnown RBP10.21□□□□□ -0.78
LIG4-204ENST00000611712 ERICH2A1L162 156 aa10.21□□□□□ -0.78
LIG4-204ENST00000611712 SLC27A2O14975 620 aa10.21□□□□□ -0.78
LIG4-204ENST00000611712 ATP2B1P20020 1258 aa10.21□□□□□ -0.78
LIG4-204ENST00000611712 ZNF165P49910 485 aa10.21□□□□□ -0.78
LIG4-204ENST00000611712 RRP12Q5JTH9 1297 aaKnown RBP10.21□□□□□ -0.78
LIG4-204ENST00000611712 IDH1O75874 414 aaKnown RBP10.2□□□□□ -0.78
LIG4-204ENST00000611712 METTL24Q5JXM2 366 aa10.2□□□□□ -0.78
LIG4-204ENST00000611712 CEP57L1Q8IYX8 460 aa10.2□□□□□ -0.78
LIG4-204ENST00000611712 EAF2Q96CJ1 260 aaPredicted RBP10.2□□□□□ -0.78
LIG4-204ENST00000611712 USP32Q8NFA0 1604 aa10.2□□□□□ -0.78
LIG4-204ENST00000611712 DLC1Q96QB1 1528 aa10.2□□□□□ -0.78
LIG4-204ENST00000611712 CDK11BP21127 795 aaKnown RBP10.2□□□□□ -0.78
LIG4-204ENST00000611712 HAND2P61296 217 aa10.2□□□□□ -0.78
LIG4-204ENST00000611712 AKAP2Q9Y2D5 859 aa10.2□□□□□ -0.78
LIG4-204ENST00000611712 RGS12O14924 1447 aa10.2□□□□□ -0.78
LIG4-204ENST00000611712 LSG1Q9H089 658 aaKnown RBP10.2□□□□□ -0.78
LIG4-204ENST00000611712 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP10.2□□□□□ -0.78
LIG4-204ENST00000611712 NDUFB9Q9Y6M9 179 aa10.2□□□□□ -0.78
LIG4-204ENST00000611712 RASSF8Q8NHQ8 419 aa10.19□□□□□ -0.78
LIG4-204ENST00000611712 EDC3Q96F86 508 aaKnown RBP10.19□□□□□ -0.78
LIG4-204ENST00000611712 PDCL3Q9H2J4 239 aa10.19□□□□□ -0.78
LIG4-204ENST00000611712 ADGRB2O60241 1585 aa10.19□□□□□ -0.78
LIG4-204ENST00000611712 CRB1P82279 1406 aa10.19□□□□□ -0.78
LIG4-204ENST00000611712 GCKRQ14397 625 aa10.19□□□□□ -0.78
LIG4-204ENST00000611712 NOLC1Q14978 699 aaKnown RBP eCLIP10.19□□□□□ -0.78
LIG4-204ENST00000611712 STK11IPQ8N1F8 1099 aa10.19□□□□□ -0.78
LIG4-204ENST00000611712 FAM200AQ8TCP9 573 aa10.19□□□□□ -0.78
LIG4-204ENST00000611712 METTL22Q9BUU2 404 aaPredicted RBP10.19□□□□□ -0.78
LIG4-204ENST00000611712 HOOK1Q9UJC3 728 aaKnown RBP10.19□□□□□ -0.78
LIG4-204ENST00000611712 NSFL1CQ9UNZ2 370 aaKnown RBP10.19□□□□□ -0.78
LIG4-204ENST00000611712 ATP10DQ9P241 1426 aa10.19□□□□□ -0.78
LIG4-204ENST00000611712 IFIT5Q13325 482 aaKnown RBP10.19□□□□□ -0.78
LIG4-204ENST00000611712 CCDC129Q6ZRS4 1044 aa10.19□□□□□ -0.78
LIG4-204ENST00000611712 VPS37DQ86XT2 251 aa10.19□□□□□ -0.78
LIG4-204ENST00000611712 ZNF496Q96IT1 587 aaPredicted RBP10.19□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms