RNA–Protein interactions for RNA: ENST00000610401.4

SSBP3-216, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 5 BASIC

Gene SSBP3, Length 3,168 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-216ENST00000610401 GUCY1B3Q02153 619 aa24.28■■□□□ 1.48
SSBP3-216ENST00000610401 SPATA32Q96LK8 384 aa24.28■■□□□ 1.48
SSBP3-216ENST00000610401 SEC62Q99442 399 aaKnown RBP24.28■■□□□ 1.48
SSBP3-216ENST00000610401 DNAJC25Q9H1X3 360 aa24.28■■□□□ 1.48
SSBP3-216ENST00000610401 KRT85P78386 507 aa24.28■■□□□ 1.48
SSBP3-216ENST00000610401 TYRO3Q06418 890 aa24.27■■□□□ 1.48
SSBP3-216ENST00000610401 BLOC1S2Q6QNY1 142 aa24.27■■□□□ 1.48
SSBP3-216ENST00000610401 SUCLG2Q96I99 432 aa24.27■■□□□ 1.48
SSBP3-216ENST00000610401 CCDC171Q6TFL3 1326 aa24.27■■□□□ 1.48
SSBP3-216ENST00000610401 NPHP1O15259 732 aa24.27■■□□□ 1.48
SSBP3-216ENST00000610401 U2AF2P26368 475 aaKnown RBP eCLIP24.27■■□□□ 1.48
SSBP3-216ENST00000610401 MAP3K11Q16584 847 aa24.27■■□□□ 1.48
SSBP3-216ENST00000610401 ATP2B3Q16720 1220 aa24.27■■□□□ 1.48
SSBP3-216ENST00000610401 MAP7D2Q96T17 732 aa24.27■■□□□ 1.48
SSBP3-216ENST00000610401 GPATCH3Q96I76 525 aa24.26■■□□□ 1.47
SSBP3-216ENST00000610401 NOL12Q9UGY1 213 aaKnown RBP eCLIP24.26■■□□□ 1.47
SSBP3-216ENST00000610401 V9GYY5 206 aaPredicted RBP24.26■■□□□ 1.47
SSBP3-216ENST00000610401 SLC27A2O14975 620 aa24.26■■□□□ 1.47
SSBP3-216ENST00000610401 NR1I2O75469 434 aa24.26■■□□□ 1.47
SSBP3-216ENST00000610401 CHAF1AQ13111 956 aaPredicted RBP24.26■■□□□ 1.47
SSBP3-216ENST00000610401 UVSSAQ2YD98 709 aa24.26■■□□□ 1.47
SSBP3-216ENST00000610401 VPS53Q5VIR6 699 aa24.25■■□□□ 1.47
SSBP3-216ENST00000610401 SSH2Q76I76 1423 aa24.25■■□□□ 1.47
SSBP3-216ENST00000610401 SASH1O94885 1247 aa24.24■■□□□ 1.47
SSBP3-216ENST00000610401 ARID5BQ14865 1188 aa24.24■■□□□ 1.47
SSBP3-216ENST00000610401 CHST3Q7LGC8 479 aa24.24■■□□□ 1.47
SSBP3-216ENST00000610401 SYTL4Q96C24 671 aaPredicted RBP24.24■■□□□ 1.47
SSBP3-216ENST00000610401 ZSWIM6Q9HCJ5 1215 aa24.24■■□□□ 1.47
SSBP3-216ENST00000610401 ESCO1Q5FWF5 840 aa24.24■■□□□ 1.47
SSBP3-216ENST00000610401 RIC3Q7Z5B4 369 aa24.24■■□□□ 1.47
SSBP3-216ENST00000610401 USP31Q70CQ4 1352 aa24.23■■□□□ 1.47
SSBP3-216ENST00000610401 MRVI1Q9Y6F6 885 aa24.23■■□□□ 1.47
SSBP3-216ENST00000610401 PTPRUQ92729 1446 aa24.23■■□□□ 1.47
SSBP3-216ENST00000610401 H3BQV1 296 aa24.23■■□□□ 1.47
SSBP3-216ENST00000610401 LETM1O95202 739 aaPredicted RBP24.23■■□□□ 1.47
SSBP3-216ENST00000610401 IFFO2Q5TF58 517 aa24.23■■□□□ 1.47
SSBP3-216ENST00000610401 CBX8Q9HC52 389 aa24.23■■□□□ 1.47
SSBP3-216ENST00000610401 KDRP35968 1356 aa24.23■■□□□ 1.47
SSBP3-216ENST00000610401 NECTIN1Q15223 517 aa24.22■■□□□ 1.47
SSBP3-216ENST00000610401 HSP90AB4PQ58FF6 505 aa24.22■■□□□ 1.47
SSBP3-216ENST00000610401 FUCA2Q9BTY2 467 aa24.22■■□□□ 1.47
SSBP3-216ENST00000610401 C3P01024 1663 aa24.22■■□□□ 1.47
SSBP3-216ENST00000610401 TTC21AQ8NDW8 1320 aa24.22■■□□□ 1.47
SSBP3-216ENST00000610401 PSME1Q06323 249 aa24.22■■□□□ 1.47
SSBP3-216ENST00000610401 KIAA1524Q8TCG1 905 aa24.22■■□□□ 1.47
SSBP3-216ENST00000610401 ADCY9O60503 1353 aa24.22■■□□□ 1.47
SSBP3-216ENST00000610401 TMEM87AQ8NBN3 555 aa24.22■■□□□ 1.47
SSBP3-216ENST00000610401 CCDC94Q9BW85 323 aaPredicted RBP24.22■■□□□ 1.47
SSBP3-216ENST00000610401 CCT2P78371 535 aaKnown RBP24.21■■□□□ 1.47
SSBP3-216ENST00000610401 C1orf141Q5JVX7 400 aa24.21■■□□□ 1.47
SSBP3-216ENST00000610401 RAB11FIP4Q86YS3 637 aa24.21■■□□□ 1.47
SSBP3-216ENST00000610401 EVI5LQ96CN4 794 aa24.21■■□□□ 1.47
SSBP3-216ENST00000610401 ADAMTS13Q76LX8 1427 aa24.21■■□□□ 1.47
SSBP3-216ENST00000610401 NRXN3Q9Y4C0 1643 aa24.2■■□□□ 1.47
SSBP3-216ENST00000610401 DDX46Q7L014 1031 aaKnown RBP24.2■■□□□ 1.47
SSBP3-216ENST00000610401 FILIP1Q7Z7B0 1213 aa24.2■■□□□ 1.47
SSBP3-216ENST00000610401 PDCL2Q8N4E4 241 aa24.2■■□□□ 1.47
SSBP3-216ENST00000610401 ATP5J2-PTCD1G3V325 749 aa24.2■■□□□ 1.46
SSBP3-216ENST00000610401 PTCD1O75127 700 aaKnown RBP24.2■■□□□ 1.46
SSBP3-216ENST00000610401 TRMT1Q9NXH9 659 aaKnown RBP24.2■■□□□ 1.46
SSBP3-216ENST00000610401 DBF4Q9UBU7 674 aaPredicted RBP24.2■■□□□ 1.46
SSBP3-216ENST00000610401 AOX1Q06278 1338 aa24.19■■□□□ 1.46
SSBP3-216ENST00000610401 HMGN5P82970 282 aaKnown RBP24.19■■□□□ 1.46
SSBP3-216ENST00000610401 FAM200AQ8TCP9 573 aa24.19■■□□□ 1.46
SSBP3-216ENST00000610401 ITSN1Q15811 1721 aa24.19■■□□□ 1.46
SSBP3-216ENST00000610401 HTATSF1O43719 755 aaKnown RBP24.19■■□□□ 1.46
SSBP3-216ENST00000610401 PRDM4Q9UKN5 801 aa24.19■■□□□ 1.46
SSBP3-216ENST00000610401 ZNF165P49910 485 aa24.18■■□□□ 1.46
SSBP3-216ENST00000610401 BRF1Q92994 677 aa24.18■■□□□ 1.46
SSBP3-216ENST00000610401 SH2B1Q9NRF2 756 aaPredicted RBP24.18■■□□□ 1.46
SSBP3-216ENST00000610401 SIPA1L2Q9P2F8 1722 aaPredicted RBP24.18■■□□□ 1.46
SSBP3-216ENST00000610401 GOLGA6L6A8MZA4 724 aa24.17■■□□□ 1.46
SSBP3-216ENST00000610401 EPHA10Q5JZY3 1008 aa24.17■■□□□ 1.46
SSBP3-216ENST00000610401 SIRT1Q96EB6 747 aa24.17■■□□□ 1.46
SSBP3-216ENST00000610401 PRIMPOLQ96LW4 560 aa24.17■■□□□ 1.46
SSBP3-216ENST00000610401 ZSCAN31Q96LW9 406 aaPredicted RBP24.17■■□□□ 1.46
SSBP3-216ENST00000610401 MON2Q7Z3U7 1717 aa24.17■■□□□ 1.46
SSBP3-216ENST00000610401 MYD88Q99836 296 aa24.17■■□□□ 1.46
SSBP3-216ENST00000610401 GRM8O00222 908 aa24.16■■□□□ 1.46
SSBP3-216ENST00000610401 LEO1Q8WVC0 666 aaPredicted RBP24.16■■□□□ 1.46
SSBP3-216ENST00000610401 KAZALD1Q96I82 304 aa24.16■■□□□ 1.46
SSBP3-216ENST00000610401 FMNL2Q96PY5 1086 aa24.16■■□□□ 1.46
SSBP3-216ENST00000610401 NCOA5Q9HCD5 579 aaKnown RBP24.16■■□□□ 1.46
SSBP3-216ENST00000610401 TTC41PQ6P2S7 1318 aa24.16■■□□□ 1.46
SSBP3-216ENST00000610401 A0A0G2JLW4 131 aa24.16■■□□□ 1.46
SSBP3-216ENST00000610401 TOB2Q14106 344 aaPredicted RBP24.16■■□□□ 1.46
SSBP3-216ENST00000610401 TPD52L1Q16890 204 aaPredicted RBP24.16■■□□□ 1.46
SSBP3-216ENST00000610401 NEUROD6Q96NK8 337 aa24.15■■□□□ 1.46
SSBP3-216ENST00000610401 ZC3H6P61129 1189 aaKnown RBP24.15■■□□□ 1.46
SSBP3-216ENST00000610401 Q6ZUG5 572 aa24.15■■□□□ 1.46
SSBP3-216ENST00000610401 PGBD1Q96JS3 809 aa24.15■■□□□ 1.46
SSBP3-216ENST00000610401 CLIP2Q9UDT6 1046 aa24.15■■□□□ 1.46
SSBP3-216ENST00000610401 KSR2Q6VAB6 950 aa24.15■■□□□ 1.46
SSBP3-216ENST00000610401 MAP4K1Q92918 833 aa24.15■■□□□ 1.46
SSBP3-216ENST00000610401 PPP6R1Q9UPN7 881 aa24.15■■□□□ 1.46
SSBP3-216ENST00000610401 USP16Q9Y5T5 823 aa24.14■■□□□ 1.46
SSBP3-216ENST00000610401 TNNT1P13805 278 aa24.14■■□□□ 1.45
SSBP3-216ENST00000610401 PSMA5P28066 241 aa24.14■■□□□ 1.45
SSBP3-216ENST00000610401 CCDC144BQ3MJ40 725 aa24.13■■□□□ 1.45
SSBP3-216ENST00000610401 CCDC144CPQ8IYA2 1237 aa24.13■■□□□ 1.45
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms