RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 COL11A2P13942 1736 aaPredicted RBP8.34□□□□□ -1.07
CUX1-220ENST00000607092 ERBB4Q15303 1308 aa8.33□□□□□ -1.08
CUX1-220ENST00000607092 RNF123Q5XPI4 1314 aa8.33□□□□□ -1.08
CUX1-220ENST00000607092 BCORQ6W2J9 1755 aa8.33□□□□□ -1.08
CUX1-220ENST00000607092 FOXN1O15353 648 aa8.33□□□□□ -1.08
CUX1-220ENST00000607092 CA12O43570 354 aa8.33□□□□□ -1.08
CUX1-220ENST00000607092 HOXA10P31260 410 aaPredicted RBP8.33□□□□□ -1.08
CUX1-220ENST00000607092 VEGFBP49765 207 aa8.33□□□□□ -1.08
CUX1-220ENST00000607092 PARP10Q53GL7 1025 aa8.33□□□□□ -1.08
CUX1-220ENST00000607092 USP50Q70EL3 339 aaPredicted RBP8.33□□□□□ -1.08
CUX1-220ENST00000607092 SYNE4Q8N205 404 aa8.33□□□□□ -1.08
CUX1-220ENST00000607092 SUPT20HQ8NEM7 779 aa8.33□□□□□ -1.08
CUX1-220ENST00000607092 PHACTR3Q96KR7 559 aa8.33□□□□□ -1.08
CUX1-220ENST00000607092 ABT1Q9ULW3 272 aaKnown RBP8.33□□□□□ -1.08
CUX1-220ENST00000607092 SLX4Q8IY92 1834 aa8.33□□□□□ -1.08
CUX1-220ENST00000607092 CDHR2Q9BYE9 1310 aa8.32□□□□□ -1.08
CUX1-220ENST00000607092 POTEIP0CG38 1075 aa8.32□□□□□ -1.08
CUX1-220ENST00000607092 POTEJP0CG39 1038 aa8.32□□□□□ -1.08
CUX1-220ENST00000607092 PPP1R42Q7Z4L9 355 aa8.32□□□□□ -1.08
CUX1-220ENST00000607092 LARGE2Q8N3Y3 721 aa8.32□□□□□ -1.08
CUX1-220ENST00000607092 RBM17Q96I25 401 aaKnown RBP8.32□□□□□ -1.08
CUX1-220ENST00000607092 CRAMP1Q96RY5 1269 aa8.32□□□□□ -1.08
CUX1-220ENST00000607092 MAP3K15Q6ZN16 1313 aa8.31□□□□□ -1.08
CUX1-220ENST00000607092 ZNF541Q9H0D2 1346 aa8.31□□□□□ -1.08
CUX1-220ENST00000607092 MAP2K2P36507 400 aa8.31□□□□□ -1.08
CUX1-220ENST00000607092 POLA2Q14181 598 aa8.31□□□□□ -1.08
CUX1-220ENST00000607092 MCM10Q7L590 875 aa8.31□□□□□ -1.08
CUX1-220ENST00000607092 NIM1KQ8IY84 436 aa8.31□□□□□ -1.08
CUX1-220ENST00000607092 NLRP3Q96P20 1036 aa8.31□□□□□ -1.08
CUX1-220ENST00000607092 DDX21Q9NR30 783 aaKnown RBP eCLIP8.31□□□□□ -1.081e-7■□□□□ 10.9
CUX1-220ENST00000607092 WDR33Q9C0J8 1336 aaKnown RBP8.3□□□□□ -1.08
CUX1-220ENST00000607092 FAM177BA6PVY3 158 aa8.3□□□□□ -1.08
CUX1-220ENST00000607092 NBPF26B4DH59 902 aa8.3□□□□□ -1.08
CUX1-220ENST00000607092 KCNQ3O43525 872 aa8.3□□□□□ -1.08
CUX1-220ENST00000607092 LBX1P52954 281 aa8.3□□□□□ -1.08
CUX1-220ENST00000607092 HSP90AB3PQ58FF7 597 aa8.3□□□□□ -1.08
CUX1-220ENST00000607092 NBPF10Q6P3W6 841 aaKnown RBP8.3□□□□□ -1.08
CUX1-220ENST00000607092 TMC4Q7Z404 712 aa8.3□□□□□ -1.08
CUX1-220ENST00000607092 NBPF15Q8N660 670 aa8.3□□□□□ -1.08
CUX1-220ENST00000607092 ADARB2Q9NS39 739 aaKnown RBP8.3□□□□□ -1.08
CUX1-220ENST00000607092 GJA3Q9Y6H8 435 aa8.3□□□□□ -1.08
CUX1-220ENST00000607092 PPEF1O14829 653 aaPredicted RBP8.29□□□□□ -1.08
CUX1-220ENST00000607092 PPP2R1AP30153 589 aa8.29□□□□□ -1.08
CUX1-220ENST00000607092 CNGB1Q14028 1251 aaPredicted RBP8.29□□□□□ -1.08
CUX1-220ENST00000607092 TNIP1Q15025 636 aa8.29□□□□□ -1.08
CUX1-220ENST00000607092 MAP1SQ66K74 1059 aaPredicted RBP8.29□□□□□ -1.08
CUX1-220ENST00000607092 GIGYF2Q6Y7W6 1299 aaKnown RBP8.29□□□□□ -1.08
CUX1-220ENST00000607092 PAXIP1Q6ZW49 1069 aaPredicted RBP8.29□□□□□ -1.08
CUX1-220ENST00000607092 ZC3H15Q8WU90 426 aaKnown RBP8.29□□□□□ -1.08
CUX1-220ENST00000607092 HHIPL1Q96JK4 782 aa8.29□□□□□ -1.08
CUX1-220ENST00000607092 BABAM1Q9NWV8 329 aa8.29□□□□□ -1.08
CUX1-220ENST00000607092 MAPK8IP3Q9UPT6 1336 aa8.29□□□□□ -1.08
CUX1-220ENST00000607092 ADAMTSL1Q8N6G6 1762 aa8.28□□□□□ -1.08
CUX1-220ENST00000607092 PPIP5K2O43314 1243 aa8.28□□□□□ -1.08
CUX1-220ENST00000607092 BBOX1O75936 387 aa8.28□□□□□ -1.08
CUX1-220ENST00000607092 HSPA8P11142 646 aaKnown RBP8.28□□□□□ -1.08
CUX1-220ENST00000607092 PIP4K2AP48426 406 aaPredicted RBP8.28□□□□□ -1.08
CUX1-220ENST00000607092 VASPP50552 380 aaPredicted RBP8.28□□□□□ -1.08
CUX1-220ENST00000607092 HLFQ16534 295 aa8.28□□□□□ -1.08
CUX1-220ENST00000607092 ABHD8Q96I13 439 aa8.28□□□□□ -1.08
CUX1-220ENST00000607092 CAPNS2Q96L46 248 aa8.28□□□□□ -1.08
CUX1-220ENST00000607092 GPR101Q96P66 508 aaPredicted RBP8.28□□□□□ -1.08
CUX1-220ENST00000607092 ZNRF3Q9ULT6 936 aa8.28□□□□□ -1.08
CUX1-220ENST00000607092 RRP7AQ9Y3A4 280 aaKnown RBP8.28□□□□□ -1.08
CUX1-220ENST00000607092 CACNA1SQ13698 1873 aa8.28□□□□□ -1.08
CUX1-220ENST00000607092 PRAMEF22A3QJZ6 481 aa8.27□□□□□ -1.09
CUX1-220ENST00000607092 LMOD3Q0VAK6 560 aa8.27□□□□□ -1.09
CUX1-220ENST00000607092 NFE2L2Q16236 605 aa8.27□□□□□ -1.09
CUX1-220ENST00000607092 SLC10A5Q5PT55 438 aa8.27□□□□□ -1.09
CUX1-220ENST00000607092 NUTM1Q86Y26 1132 aa8.27□□□□□ -1.09
CUX1-220ENST00000607092 ZNF34Q8IZ26 560 aa8.27□□□□□ -1.09
CUX1-220ENST00000607092 UTP14AQ9BVJ6 771 aaKnown RBP8.27□□□□□ -1.09
CUX1-220ENST00000607092 GPRC5DQ9NZD1 345 aa8.27□□□□□ -1.09
CUX1-220ENST00000607092 ATP6V0A2Q9Y487 856 aa8.27□□□□□ -1.09
CUX1-220ENST00000607092 TLL2Q9Y6L7 1015 aa8.27□□□□□ -1.09
CUX1-220ENST00000607092 LAMB4A4D0S4 1761 aa8.27□□□□□ -1.09
CUX1-220ENST00000607092 SNED1Q8TER0 1413 aa8.27□□□□□ -1.09
CUX1-220ENST00000607092 PDE4DIPQ5VU43 2346 aa8.26□□□□□ -1.09
CUX1-220ENST00000607092 ABCC12Q96J65 1359 aa8.26□□□□□ -1.09
CUX1-220ENST00000607092 NTSR2O95665 410 aa8.26□□□□□ -1.09
CUX1-220ENST00000607092 HSP90B1P14625 803 aaKnown RBP8.26□□□□□ -1.09
CUX1-220ENST00000607092 MYL6BP14649 208 aa8.26□□□□□ -1.09
CUX1-220ENST00000607092 GPTP24298 496 aa8.26□□□□□ -1.09
CUX1-220ENST00000607092 SCNN1DP51172 638 aa8.26□□□□□ -1.09
CUX1-220ENST00000607092 BRPF1P55201 1214 aaPredicted RBP8.26□□□□□ -1.09
CUX1-220ENST00000607092 EIF4A1P60842 406 aaKnown RBP8.26□□□□□ -1.09
CUX1-220ENST00000607092 DCTN1Q14203 1278 aa8.26□□□□□ -1.09
CUX1-220ENST00000607092 CIAPIN1Q6FI81 312 aa8.26□□□□□ -1.09
CUX1-220ENST00000607092 DPP8Q6V1X1 898 aaPredicted RBP8.26□□□□□ -1.09
CUX1-220ENST00000607092 DDX46Q7L014 1031 aaKnown RBP8.26□□□□□ -1.09
CUX1-220ENST00000607092 CDC37L1Q7L3B6 337 aa8.26□□□□□ -1.09
CUX1-220ENST00000607092 SP8Q8IXZ3 490 aa8.26□□□□□ -1.09
CUX1-220ENST00000607092 MPNDQ8N594 471 aa8.26□□□□□ -1.09
CUX1-220ENST00000607092 NGEFQ8N5V2 710 aa8.26□□□□□ -1.09
CUX1-220ENST00000607092 BCL2L13Q9BXK5 485 aa8.26□□□□□ -1.09
CUX1-220ENST00000607092 RTFDC1Q9BY42 306 aaPredicted RBP8.26□□□□□ -1.09
CUX1-220ENST00000607092 RNF39Q9H2S5 420 aa8.26□□□□□ -1.09
CUX1-220ENST00000607092 ZBTB3Q9H5J0 574 aa8.26□□□□□ -1.09
CUX1-220ENST00000607092 H7C1D1 291 aa8.25□□□□□ -1.09
CUX1-220ENST00000607092 EPS15P42566 896 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms