RNA–Protein interactions for RNA: ENST00000600320.5

SHKBP1-222, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 5

Gene SHKBP1, Length 913 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-222ENST00000600320 NRXN2Q9P2S2 1712 aa25.37■■□□□ 1.65
SHKBP1-222ENST00000600320 TMEM57Q8N5G2 664 aa25.36■■□□□ 1.65
SHKBP1-222ENST00000600320 PANK1Q8TE04 598 aa25.36■■□□□ 1.65
SHKBP1-222ENST00000600320 CWC25Q9NXE8 425 aaPredicted RBP25.36■■□□□ 1.65
SHKBP1-222ENST00000600320 SUPT16HQ9Y5B9 1047 aaKnown RBP25.36■■□□□ 1.65
SHKBP1-222ENST00000600320 RNF123Q5XPI4 1314 aa25.36■■□□□ 1.65
SHKBP1-222ENST00000600320 ALDH1L1O75891 902 aa25.35■■□□□ 1.65
SHKBP1-222ENST00000600320 POLD1P28340 1107 aa25.35■■□□□ 1.65
SHKBP1-222ENST00000600320 GCKRQ14397 625 aa25.35■■□□□ 1.65
SHKBP1-222ENST00000600320 C20orf194Q5TEA3 1177 aa25.35■■□□□ 1.65
SHKBP1-222ENST00000600320 INTS3Q68E01 1043 aaKnown RBP25.35■■□□□ 1.65
SHKBP1-222ENST00000600320 NBPF5PQ86XG9 351 aaPredicted RBP25.35■■□□□ 1.65
SHKBP1-222ENST00000600320 CCDC24Q8N4L8 307 aa25.35■■□□□ 1.65
SHKBP1-222ENST00000600320 GOLGA6L2Q8N9W4 650 aaPredicted RBP25.35■■□□□ 1.65
SHKBP1-222ENST00000600320 JARID2Q92833 1246 aaPredicted RBP25.35■■□□□ 1.65
SHKBP1-222ENST00000600320 IBTKQ9P2D0 1353 aaPredicted RBP25.34■■□□□ 1.65
SHKBP1-222ENST00000600320 CCT4P50991 539 aaKnown RBP25.34■■□□□ 1.65
SHKBP1-222ENST00000600320 PRR5LQ6MZQ0 368 aa25.34■■□□□ 1.65
SHKBP1-222ENST00000600320 PPP1R42Q7Z4L9 355 aa25.34■■□□□ 1.65
SHKBP1-222ENST00000600320 NUTM1Q86Y26 1132 aa25.34■■□□□ 1.65
SHKBP1-222ENST00000600320 SYNE4Q8N205 404 aa25.34■■□□□ 1.65
SHKBP1-222ENST00000600320 UTP14AQ9BVJ6 771 aaKnown RBP25.34■■□□□ 1.65
SHKBP1-222ENST00000600320 FTSJ3Q8IY81 847 aaKnown RBP25.33■■□□□ 1.65
SHKBP1-222ENST00000600320 LRP5O75197 1615 aa25.33■■□□□ 1.65
SHKBP1-222ENST00000600320 ABCC12Q96J65 1359 aa25.32■■□□□ 1.64
SHKBP1-222ENST00000600320 CENPBP07199 599 aaPredicted RBP25.32■■□□□ 1.64
SHKBP1-222ENST00000600320 ERFEQ4G0M1 354 aa25.32■■□□□ 1.64
SHKBP1-222ENST00000600320 RTL5Q5HYW3 569 aaPredicted RBP25.32■■□□□ 1.64
SHKBP1-222ENST00000600320 TRMT112Q9UI30 125 aaKnown RBP25.32■■□□□ 1.64
SHKBP1-222ENST00000600320 TPTE2Q6XPS3 522 aa25.31■■□□□ 1.64
SHKBP1-222ENST00000600320 CNBD1Q8NA66 436 aa25.31■■□□□ 1.64
SHKBP1-222ENST00000600320 FAM89AQ96GI7 184 aa25.31■■□□□ 1.64
SHKBP1-222ENST00000600320 NYXQ9GZU5 481 aa25.31■■□□□ 1.64
SHKBP1-222ENST00000600320 H7C1W4 665 aa25.3■■□□□ 1.64
SHKBP1-222ENST00000600320 PCCAP05165 728 aaPredicted RBP25.3■■□□□ 1.64
SHKBP1-222ENST00000600320 CASP7P55210 303 aa25.3■■□□□ 1.64
SHKBP1-222ENST00000600320 ZBTB38Q8NAP3 1195 aaPredicted RBP25.3■■□□□ 1.64
SHKBP1-222ENST00000600320 SH3TC1Q8TE82 1336 aa25.3■■□□□ 1.64
SHKBP1-222ENST00000600320 PDE3AQ14432 1141 aa25.29■■□□□ 1.64
SHKBP1-222ENST00000600320 GRM8O00222 908 aa25.28■■□□□ 1.64
SHKBP1-222ENST00000600320 MS4A1P11836 297 aa25.28■■□□□ 1.64
SHKBP1-222ENST00000600320 UBE3BQ7Z3V4 1068 aa25.28■■□□□ 1.64
SHKBP1-222ENST00000600320 USP44Q9H0E7 712 aa25.28■■□□□ 1.64
SHKBP1-222ENST00000600320 COG6Q9Y2V7 657 aa25.28■■□□□ 1.64
SHKBP1-222ENST00000600320 C10orf71Q711Q0 1435 aa25.28■■□□□ 1.64
SHKBP1-222ENST00000600320 NPHP1O15259 732 aa25.27■■□□□ 1.64
SHKBP1-222ENST00000600320 GTF2E1P29083 439 aaPredicted RBP25.27■■□□□ 1.64
SHKBP1-222ENST00000600320 ITPRIPQ8IWB1 547 aa25.27■■□□□ 1.64
SHKBP1-222ENST00000600320 ANKRD31Q8N7Z5 1873 aa25.26■■□□□ 1.63
SHKBP1-222ENST00000600320 NBPF7P0C2Y1 421 aaPredicted RBP25.26■■□□□ 1.63
SHKBP1-222ENST00000600320 HCLS1P14317 486 aaPredicted RBP25.26■■□□□ 1.63
SHKBP1-222ENST00000600320 ST5P78524 1137 aa25.26■■□□□ 1.63
SHKBP1-222ENST00000600320 SLC10A5Q5PT55 438 aa25.26■■□□□ 1.63
SHKBP1-222ENST00000600320 MEIS3Q99687 375 aa25.26■■□□□ 1.63
SHKBP1-222ENST00000600320 C9orf78Q9NZ63 289 aaPredicted RBP25.26■■□□□ 1.63
SHKBP1-222ENST00000600320 UTYO14607 1347 aa25.26■■□□□ 1.63
SHKBP1-222ENST00000600320 TNRC6CQ9HCJ0 1690 aaKnown RBP25.26■■□□□ 1.63
SHKBP1-222ENST00000600320 IRS4O14654 1257 aaPredicted RBP25.25■■□□□ 1.63
SHKBP1-222ENST00000600320 MVPQ14764 893 aaKnown RBP25.25■■□□□ 1.63
SHKBP1-222ENST00000600320 CDHR2Q9BYE9 1310 aa25.25■■□□□ 1.63
SHKBP1-222ENST00000600320 DDX60Q8IY21 1712 aaKnown RBP25.25■■□□□ 1.63
SHKBP1-222ENST00000600320 C3orf67Q6ZVT6 689 aa25.24■■□□□ 1.63
SHKBP1-222ENST00000600320 KIF13BQ9NQT8 1826 aa25.22■■□□□ 1.63
SHKBP1-222ENST00000600320 SUCLG2Q96I99 432 aa25.22■■□□□ 1.63
SHKBP1-222ENST00000600320 BRIP1Q9BX63 1249 aa25.22■■□□□ 1.63
SHKBP1-222ENST00000600320 LAMB2P55268 1798 aa25.22■■□□□ 1.63
SHKBP1-222ENST00000600320 RIC1Q4ADV7 1423 aa25.21■■□□□ 1.63
SHKBP1-222ENST00000600320 ZBTB7BO15156 539 aaPredicted RBP25.21■■□□□ 1.63
SHKBP1-222ENST00000600320 EPHA10Q5JZY3 1008 aa25.21■■□□□ 1.63
SHKBP1-222ENST00000600320 KLHL34Q8N239 644 aa25.21■■□□□ 1.63
SHKBP1-222ENST00000600320 KAZALD1Q96I82 304 aa25.21■■□□□ 1.63
SHKBP1-222ENST00000600320 CRBNQ96SW2 442 aa25.2■■□□□ 1.62
SHKBP1-222ENST00000600320 PDE8AO60658 829 aa25.19■■□□□ 1.62
SHKBP1-222ENST00000600320 PLA2G12BQ9BX93 195 aa25.19■■□□□ 1.62
SHKBP1-222ENST00000600320 PPP1R1BQ9UD71 204 aaPredicted RBP25.19■■□□□ 1.62
SHKBP1-222ENST00000600320 KIAA1551Q9HCM1 1747 aa25.18■■□□□ 1.62
SHKBP1-222ENST00000600320 UBTFL1P0CB47 393 aaPredicted RBP25.18■■□□□ 1.62
SHKBP1-222ENST00000600320 COL11A2P13942 1736 aaPredicted RBP25.17■■□□□ 1.62
SHKBP1-222ENST00000600320 KLRG2A4D1S0 409 aaPredicted RBP25.17■■□□□ 1.62
SHKBP1-222ENST00000600320 CHRNA5P30532 468 aa25.17■■□□□ 1.62
SHKBP1-222ENST00000600320 FOXO4P98177 505 aa25.17■■□□□ 1.62
SHKBP1-222ENST00000600320 NLRP3Q96P20 1036 aa25.17■■□□□ 1.62
SHKBP1-222ENST00000600320 FHDC1Q9C0D6 1143 aaPredicted RBP25.17■■□□□ 1.62
SHKBP1-222ENST00000600320 DDX19BQ9UMR2 479 aa25.17■■□□□ 1.62
SHKBP1-222ENST00000600320 CD2APQ9Y5K6 639 aa25.17■■□□□ 1.62
SHKBP1-222ENST00000600320 GNAI3P08754 354 aa25.16■■□□□ 1.62
SHKBP1-222ENST00000600320 PDE6BP35913 854 aa25.16■■□□□ 1.62
SHKBP1-222ENST00000600320 IRX6P78412 446 aaPredicted RBP25.16■■□□□ 1.62
SHKBP1-222ENST00000600320 LRRFIP2Q9Y608 721 aaKnown RBP25.16■■□□□ 1.62
SHKBP1-222ENST00000600320 CTSWP56202 376 aa25.15■■□□□ 1.62
SHKBP1-222ENST00000600320 SF3B3Q15393 1217 aaKnown RBP25.15■■□□□ 1.62
SHKBP1-222ENST00000600320 CRY2Q49AN0 593 aa25.15■■□□□ 1.62
SHKBP1-222ENST00000600320 C2CD5Q86YS7 1000 aa25.15■■□□□ 1.62
SHKBP1-222ENST00000600320 C1orf115Q9H7X2 142 aa25.15■■□□□ 1.62
SHKBP1-222ENST00000600320 DPEP1P16444 411 aa25.14■■□□□ 1.62
SHKBP1-222ENST00000600320 ANKRD44Q8N8A2 993 aa25.14■■□□□ 1.62
SHKBP1-222ENST00000600320 NLGN2Q8NFZ4 835 aa25.14■■□□□ 1.62
SHKBP1-222ENST00000600320 CCDC85AQ96PX6 553 aaPredicted RBP25.14■■□□□ 1.62
SHKBP1-222ENST00000600320 BICC1Q9H694 974 aaKnown RBP25.14■■□□□ 1.62
SHKBP1-222ENST00000600320 A0A0G2JLW4 131 aa25.13■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms