RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 LTBP1Q14766 1721 aa13.57□□□□□ -0.24
TRIM28-210ENST00000597618 NBPF26B4DH59 902 aa13.57□□□□□ -0.24
TRIM28-210ENST00000597618 PER1O15534 1290 aaPredicted RBP13.57□□□□□ -0.24
TRIM28-210ENST00000597618 PRKAR2BP31323 418 aa13.57□□□□□ -0.24
TRIM28-210ENST00000597618 EPS15P42566 896 aa13.57□□□□□ -0.24
TRIM28-210ENST00000597618 NBPF10Q6P3W6 841 aaKnown RBP13.57□□□□□ -0.24
TRIM28-210ENST00000597618 LARGE2Q8N3Y3 721 aa13.57□□□□□ -0.24
TRIM28-210ENST00000597618 NBPF15Q8N660 670 aa13.57□□□□□ -0.24
TRIM28-210ENST00000597618 ABCC12Q96J65 1359 aa13.57□□□□□ -0.24
TRIM28-210ENST00000597618 NPC1L1Q9UHC9 1359 aa13.57□□□□□ -0.24
TRIM28-210ENST00000597618 TRAF5O00463 557 aa13.56□□□□□ -0.24
TRIM28-210ENST00000597618 FMR1Q06787 632 aaKnown RBP eCLIP13.56□□□□□ -0.244e-10■■■□□ 16
TRIM28-210ENST00000597618 CST9Q5W186 159 aa13.56□□□□□ -0.24
TRIM28-210ENST00000597618 RTF1Q92541 710 aaKnown RBP13.56□□□□□ -0.24
TRIM28-210ENST00000597618 RPGRQ92834 1020 aaKnown RBP13.56□□□□□ -0.24
TRIM28-210ENST00000597618 PHACTR3Q96KR7 559 aa13.56□□□□□ -0.24
TRIM28-210ENST00000597618 RIC1Q4ADV7 1423 aa13.56□□□□□ -0.24
TRIM28-210ENST00000597618 HOXA10P31260 410 aaPredicted RBP13.55□□□□□ -0.24
TRIM28-210ENST00000597618 HLFQ16534 295 aa13.55□□□□□ -0.24
TRIM28-210ENST00000597618 NIM1KQ8IY84 436 aa13.55□□□□□ -0.24
TRIM28-210ENST00000597618 RSPH6AQ9H0K4 717 aa13.55□□□□□ -0.24
TRIM28-210ENST00000597618 TSKSQ9UJT2 592 aa13.55□□□□□ -0.24
TRIM28-210ENST00000597618 IBTKQ9P2D0 1353 aaPredicted RBP13.55□□□□□ -0.24
TRIM28-210ENST00000597618 AOC2O75106 756 aa13.54□□□□□ -0.24
TRIM28-210ENST00000597618 BRPF1P55201 1214 aaPredicted RBP13.54□□□□□ -0.24
TRIM28-210ENST00000597618 SAPCD2Q86UD0 394 aa13.54□□□□□ -0.24
TRIM28-210ENST00000597618 NUTM1Q86Y26 1132 aa13.54□□□□□ -0.24
TRIM28-210ENST00000597618 HHIPL1Q96JK4 782 aa13.54□□□□□ -0.24
TRIM28-210ENST00000597618 CFAP44Q96MT7 982 aa13.54□□□□□ -0.24
TRIM28-210ENST00000597618 MCOLN1Q9GZU1 580 aa13.54□□□□□ -0.24
TRIM28-210ENST00000597618 ADARB2Q9NS39 739 aaKnown RBP13.54□□□□□ -0.24
TRIM28-210ENST00000597618 ERVV-1B6SEH8 477 aa13.53□□□□□ -0.24
TRIM28-210ENST00000597618 PPEF1O14829 653 aaPredicted RBP13.53□□□□□ -0.24
TRIM28-210ENST00000597618 MCM10Q7L590 875 aa13.53□□□□□ -0.24
TRIM28-210ENST00000597618 RBM17Q96I25 401 aaKnown RBP13.53□□□□□ -0.24
TRIM28-210ENST00000597618 CFAP53Q96M91 514 aa13.53□□□□□ -0.24
TRIM28-210ENST00000597618 PCGF6Q9BYE7 350 aa13.53□□□□□ -0.24
TRIM28-210ENST00000597618 GPRC5DQ9NZD1 345 aa13.53□□□□□ -0.24
TRIM28-210ENST00000597618 TRPM7Q96QT4 1865 aa13.53□□□□□ -0.24
TRIM28-210ENST00000597618 PPIP5K2O43314 1243 aa13.52□□□□□ -0.25
TRIM28-210ENST00000597618 CELF2O95319 508 aaKnown RBP13.52□□□□□ -0.25
TRIM28-210ENST00000597618 CRAMP1Q96RY5 1269 aa13.52□□□□□ -0.25
TRIM28-210ENST00000597618 TMX4Q9H1E5 349 aaPredicted RBP13.52□□□□□ -0.25
TRIM28-210ENST00000597618 VPS33BQ9H267 617 aa13.52□□□□□ -0.25
TRIM28-210ENST00000597618 MAP3K15Q6ZN16 1313 aa13.51□□□□□ -0.25
TRIM28-210ENST00000597618 CDHR2Q9BYE9 1310 aa13.51□□□□□ -0.25
TRIM28-210ENST00000597618 HTATSF1O43719 755 aaKnown RBP13.51□□□□□ -0.25
TRIM28-210ENST00000597618 KIF6Q6ZMV9 814 aa13.51□□□□□ -0.25
TRIM28-210ENST00000597618 NUDCQ9Y266 331 aa13.51□□□□□ -0.25
TRIM28-210ENST00000597618 TNRC18O15417 2968 aaPredicted RBP13.5□□□□□ -0.25
TRIM28-210ENST00000597618 PDE4DIPQ5VU43 2346 aa13.5□□□□□ -0.25
TRIM28-210ENST00000597618 CNGB1Q14028 1251 aaPredicted RBP13.5□□□□□ -0.25
TRIM28-210ENST00000597618 AOC3Q16853 763 aa13.5□□□□□ -0.25
TRIM28-210ENST00000597618 LAMB4A4D0S4 1761 aa13.5□□□□□ -0.25
TRIM28-210ENST00000597618 UBN2Q6ZU65 1347 aa13.49□□□□□ -0.25
TRIM28-210ENST00000597618 TCERG1O14776 1098 aaKnown RBP13.49□□□□□ -0.25
TRIM28-210ENST00000597618 U2AF1L5P0DN76 240 aaPredicted RBP13.49□□□□□ -0.25
TRIM28-210ENST00000597618 GPTP24298 496 aa13.49□□□□□ -0.25
TRIM28-210ENST00000597618 GMPSP49915 693 aaPredicted RBP13.49□□□□□ -0.25
TRIM28-210ENST00000597618 U2AF1Q01081 240 aaKnown RBP eCLIP13.49□□□□□ -0.25
TRIM28-210ENST00000597618 DGKZQ13574 1117 aa13.49□□□□□ -0.25
TRIM28-210ENST00000597618 TAF7Q15545 349 aaPredicted RBP13.49□□□□□ -0.25
TRIM28-210ENST00000597618 NGEFQ8N5V2 710 aa13.49□□□□□ -0.25
TRIM28-210ENST00000597618 SUPT20HQ8NEM7 779 aa13.49□□□□□ -0.25
TRIM28-210ENST00000597618 ZC3H15Q8WU90 426 aaKnown RBP13.49□□□□□ -0.25
TRIM28-210ENST00000597618 GLIS2Q9BZE0 524 aaPredicted RBP13.49□□□□□ -0.25
TRIM28-210ENST00000597618 ZNRF3Q9ULT6 936 aa13.49□□□□□ -0.25
TRIM28-210ENST00000597618 CXCL9Q07325 125 aa13.48□□□□□ -0.25
TRIM28-210ENST00000597618 NOGQ13253 232 aa13.48□□□□□ -0.25
TRIM28-210ENST00000597618 DCTN1Q14203 1278 aa13.48□□□□□ -0.25
TRIM28-210ENST00000597618 SUSD4Q5VX71 490 aa13.48□□□□□ -0.25
TRIM28-210ENST00000597618 CIAPIN1Q6FI81 312 aa13.48□□□□□ -0.25
TRIM28-210ENST00000597618 SLC51AQ86UW1 340 aa13.48□□□□□ -0.25
TRIM28-210ENST00000597618 ZNF408Q9H9D4 720 aa13.48□□□□□ -0.25
TRIM28-210ENST00000597618 PGAP2Q9UHJ9 254 aa13.48□□□□□ -0.25
TRIM28-210ENST00000597618 ATP6V0A2Q9Y487 856 aa13.48□□□□□ -0.25
TRIM28-210ENST00000597618 NTSR2O95665 410 aa13.47□□□□□ -0.25
TRIM28-210ENST00000597618 TTLL7Q6ZT98 887 aa13.47□□□□□ -0.25
TRIM28-210ENST00000597618 CDC37L1Q7L3B6 337 aa13.47□□□□□ -0.25
TRIM28-210ENST00000597618 PNISRQ8TF01 805 aaKnown RBP13.47□□□□□ -0.25
TRIM28-210ENST00000597618 RTFDC1Q9BY42 306 aaPredicted RBP13.47□□□□□ -0.25
TRIM28-210ENST00000597618 ZBTB3Q9H5J0 574 aa13.47□□□□□ -0.25
TRIM28-210ENST00000597618 C3orf67Q6ZVT6 689 aa13.46□□□□□ -0.25
TRIM28-210ENST00000597618 PPP1R42Q7Z4L9 355 aa13.46□□□□□ -0.25
TRIM28-210ENST00000597618 ZNF34Q8IZ26 560 aa13.46□□□□□ -0.25
TRIM28-210ENST00000597618 NLRP3Q96P20 1036 aa13.46□□□□□ -0.25
TRIM28-210ENST00000597618 BCL2L13Q9BXK5 485 aa13.46□□□□□ -0.25
TRIM28-210ENST00000597618 RRP7AQ9Y3A4 280 aaKnown RBP13.46□□□□□ -0.25
TRIM28-210ENST00000597618 ABCC4O15439 1325 aa13.45□□□□□ -0.26
TRIM28-210ENST00000597618 MYL6BP14649 208 aa13.45□□□□□ -0.26
TRIM28-210ENST00000597618 KIAA2012Q0VF49 1180 aa13.45□□□□□ -0.26
TRIM28-210ENST00000597618 TNIP1Q15025 636 aa13.45□□□□□ -0.26
TRIM28-210ENST00000597618 PARP10Q53GL7 1025 aa13.45□□□□□ -0.26
TRIM28-210ENST00000597618 DPP8Q6V1X1 898 aaPredicted RBP13.45□□□□□ -0.26
TRIM28-210ENST00000597618 MIS18AQ9NYP9 233 aa13.45□□□□□ -0.26
TRIM28-210ENST00000597618 NUP98P52948 1817 aa13.45□□□□□ -0.26
TRIM28-210ENST00000597618 CASP8AP2Q9UKL3 1982 aa13.44□□□□□ -0.26
TRIM28-210ENST00000597618 HUNKP57058 714 aa13.44□□□□□ -0.26
TRIM28-210ENST00000597618 GIGYF2Q6Y7W6 1299 aaKnown RBP13.44□□□□□ -0.26
TRIM28-210ENST00000597618 TRPM4Q8TD43 1214 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms