RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 ERFEQ4G0M1 354 aa19.11■□□□□ 0.65
TRIM28-207ENST00000597136 HSP90AB3PQ58FF7 597 aa19.11■□□□□ 0.65
TRIM28-207ENST00000597136 METTL22Q9BUU2 404 aaPredicted RBP19.11■□□□□ 0.65
TRIM28-207ENST00000597136 PXDNLA1KZ92 1463 aa19.11■□□□□ 0.65
TRIM28-207ENST00000597136 NTSR2O95665 410 aa19.1■□□□□ 0.65
TRIM28-207ENST00000597136 DPEP1P16444 411 aa19.1■□□□□ 0.65
TRIM28-207ENST00000597136 SUPT16HQ9Y5B9 1047 aaKnown RBP19.1■□□□□ 0.65
TRIM28-207ENST00000597136 SLX4Q8IY92 1834 aa19.1■□□□□ 0.65
TRIM28-207ENST00000597136 NPHP1O15259 732 aa19.1■□□□□ 0.65
TRIM28-207ENST00000597136 KCNA3P22001 575 aa19.1■□□□□ 0.65
TRIM28-207ENST00000597136 PARP10Q53GL7 1025 aa19.1■□□□□ 0.65
TRIM28-207ENST00000597136 SMC4Q9NTJ3 1288 aa19.1■□□□□ 0.65
TRIM28-207ENST00000597136 CCDC88AQ3V6T2 1871 aa19.1■□□□□ 0.65
TRIM28-207ENST00000597136 ARFGEF1Q9Y6D6 1849 aa19.09■□□□□ 0.65
TRIM28-207ENST00000597136 IGKV5-2P06315 115 aa19.09■□□□□ 0.65
TRIM28-207ENST00000597136 ABCC12Q96J65 1359 aa19.08■□□□□ 0.65
TRIM28-207ENST00000597136 GTF2E1P29083 439 aaPredicted RBP19.08■□□□□ 0.65
TRIM28-207ENST00000597136 BRPF1P55201 1214 aaPredicted RBP19.08■□□□□ 0.65
TRIM28-207ENST00000597136 TGFB2P61812 414 aa19.08■□□□□ 0.65
TRIM28-207ENST00000597136 TRIM28Q13263 835 aaKnown RBP19.08■□□□□ 0.65
TRIM28-207ENST00000597136 PPP1R42Q7Z4L9 355 aa19.08■□□□□ 0.65
TRIM28-207ENST00000597136 JARID2Q92833 1246 aaPredicted RBP19.08■□□□□ 0.65
TRIM28-207ENST00000597136 UTP14AQ9BVJ6 771 aaKnown RBP19.08■□□□□ 0.65
TRIM28-207ENST00000597136 BRIP1Q9BX63 1249 aa19.08■□□□□ 0.65
TRIM28-207ENST00000597136 CWF19L2Q2TBE0 894 aaKnown RBP19.07■□□□□ 0.64
TRIM28-207ENST00000597136 RTL5Q5HYW3 569 aaPredicted RBP19.07■□□□□ 0.64
TRIM28-207ENST00000597136 DNAAF4Q8WXU2 420 aa19.07■□□□□ 0.64
TRIM28-207ENST00000597136 NYXQ9GZU5 481 aa19.07■□□□□ 0.64
TRIM28-207ENST00000597136 RNF123Q5XPI4 1314 aa19.07■□□□□ 0.64
TRIM28-207ENST00000597136 ST5P78524 1137 aa19.06■□□□□ 0.64
TRIM28-207ENST00000597136 FAM89AQ96GI7 184 aa19.06■□□□□ 0.64
TRIM28-207ENST00000597136 TRMT112Q9UI30 125 aaKnown RBP19.06■□□□□ 0.64
TRIM28-207ENST00000597136 CHD4Q14839 1912 aa19.06■□□□□ 0.64
TRIM28-207ENST00000597136 C2CD5Q86YS7 1000 aa19.06■□□□□ 0.64
TRIM28-207ENST00000597136 NOB1Q9ULX3 412 aaKnown RBP19.06■□□□□ 0.64
TRIM28-207ENST00000597136 C3orf67Q6ZVT6 689 aa19.05■□□□□ 0.64
TRIM28-207ENST00000597136 IBTKQ9P2D0 1353 aaPredicted RBP19.04■□□□□ 0.64
TRIM28-207ENST00000597136 NEURL1BA8MQ27 555 aa19.04■□□□□ 0.64
TRIM28-207ENST00000597136 HCLS1P14317 486 aaPredicted RBP19.04■□□□□ 0.64
TRIM28-207ENST00000597136 RRP1P56182 461 aaKnown RBP19.04■□□□□ 0.64
TRIM28-207ENST00000597136 NEXNQ0ZGT2 675 aa19.04■□□□□ 0.64
TRIM28-207ENST00000597136 PELP1Q8IZL8 1130 aaKnown RBP19.04■□□□□ 0.64
TRIM28-207ENST00000597136 CCDC191Q8NCU4 936 aa19.04■□□□□ 0.64
TRIM28-207ENST00000597136 H0YIN7 160 aa19.03■□□□□ 0.64
TRIM28-207ENST00000597136 PLIN1O60240 522 aa19.03■□□□□ 0.64
TRIM28-207ENST00000597136 YBX3P16989 372 aaKnown RBP eCLIP19.03■□□□□ 0.642e-27■□□□□ 9.3
TRIM28-207ENST00000597136 PDE6BP35913 854 aa19.03■□□□□ 0.64
TRIM28-207ENST00000597136 SLC10A5Q5PT55 438 aa19.03■□□□□ 0.64
TRIM28-207ENST00000597136 BEND3Q5T5X7 828 aa19.03■□□□□ 0.64
TRIM28-207ENST00000597136 SLC4A10Q6U841 1118 aa19.03■□□□□ 0.64
TRIM28-207ENST00000597136 CWC25Q9NXE8 425 aaPredicted RBP19.03■□□□□ 0.64
TRIM28-207ENST00000597136 SBF1O95248 1867 aa19.02■□□□□ 0.64
TRIM28-207ENST00000597136 FRAT1Q92837 279 aaPredicted RBP19.02■□□□□ 0.64
TRIM28-207ENST00000597136 SH3TC1Q8TE82 1336 aa19.02■□□□□ 0.64
TRIM28-207ENST00000597136 KIF16BQ96L93 1317 aa19.02■□□□□ 0.64
TRIM28-207ENST00000597136 KLRG2A4D1S0 409 aaPredicted RBP19.02■□□□□ 0.63
TRIM28-207ENST00000597136 SRGNP10124 158 aa19.02■□□□□ 0.63
TRIM28-207ENST00000597136 GOLGA6L2Q8N9W4 650 aaPredicted RBP19.02■□□□□ 0.63
TRIM28-207ENST00000597136 LINS1Q8NG48 757 aa19.02■□□□□ 0.63
TRIM28-207ENST00000597136 ZNF622Q969S3 477 aaKnown RBP eCLIP19.02■□□□□ 0.63
TRIM28-207ENST00000597136 TNNQ9UQP3 1299 aa19.02■□□□□ 0.63
TRIM28-207ENST00000597136 PTPRCP08575 1304 aa19.01■□□□□ 0.63
TRIM28-207ENST00000597136 SPEF2Q9C093 1822 aa19.01■□□□□ 0.63
TRIM28-207ENST00000597136 GPR162Q16538 588 aa19.01■□□□□ 0.63
TRIM28-207ENST00000597136 ZBTB38Q8NAP3 1195 aaPredicted RBP19.01■□□□□ 0.63
TRIM28-207ENST00000597136 PIM2Q9P1W9 311 aa19.01■□□□□ 0.63
TRIM28-207ENST00000597136 IPO8O15397 1037 aaKnown RBP19■□□□□ 0.63
TRIM28-207ENST00000597136 GCKRQ14397 625 aa19■□□□□ 0.63
TRIM28-207ENST00000597136 PCCAP05165 728 aaPredicted RBP18.99■□□□□ 0.63
TRIM28-207ENST00000597136 ARHGAP45Q92619 1136 aa18.99■□□□□ 0.63
TRIM28-207ENST00000597136 BCS1LQ9Y276 419 aa18.99■□□□□ 0.63
TRIM28-207ENST00000597136 FER1L6Q2WGJ9 1857 aa18.99■□□□□ 0.63
TRIM28-207ENST00000597136 COL4A1P02462 1669 aa18.99■□□□□ 0.63
TRIM28-207ENST00000597136 RIC1Q4ADV7 1423 aa18.98■□□□□ 0.63
TRIM28-207ENST00000597136 H7C1W4 665 aa18.98■□□□□ 0.63
TRIM28-207ENST00000597136 IRS4O14654 1257 aaPredicted RBP18.98■□□□□ 0.63
TRIM28-207ENST00000597136 ZKSCAN2Q63HK3 967 aa18.98■□□□□ 0.63
TRIM28-207ENST00000597136 NLRP3Q96P20 1036 aa18.98■□□□□ 0.63
TRIM28-207ENST00000597136 CRY2Q49AN0 593 aa18.98■□□□□ 0.63
TRIM28-207ENST00000597136 ATF7IPQ6VMQ6 1270 aa18.98■□□□□ 0.63
TRIM28-207ENST00000597136 UBE3BQ7Z3V4 1068 aa18.98■□□□□ 0.63
TRIM28-207ENST00000597136 TRIM27P14373 513 aa18.97■□□□□ 0.63
TRIM28-207ENST00000597136 MASTLQ96GX5 879 aa18.97■□□□□ 0.63
TRIM28-207ENST00000597136 SRCIN1Q9C0H9 1055 aa18.97■□□□□ 0.63
TRIM28-207ENST00000597136 NPR1P16066 1061 aa18.96■□□□□ 0.63
TRIM28-207ENST00000597136 CASP7P55210 303 aa18.96■□□□□ 0.63
TRIM28-207ENST00000597136 DALRD3Q5D0E6 543 aaKnown RBP18.96■□□□□ 0.63
TRIM28-207ENST00000597136 STYK1Q6J9G0 422 aa18.96■□□□□ 0.63
TRIM28-207ENST00000597136 TTLL6Q8N841 843 aa18.96■□□□□ 0.63
TRIM28-207ENST00000597136 ZNF219Q9P2Y4 722 aaPredicted RBP18.96■□□□□ 0.63
TRIM28-207ENST00000597136 PDZRN3Q9UPQ7 1066 aa18.96■□□□□ 0.63
TRIM28-207ENST00000597136 C20orf194Q5TEA3 1177 aa18.95■□□□□ 0.62
TRIM28-207ENST00000597136 PDE3AQ14432 1141 aa18.94■□□□□ 0.62
TRIM28-207ENST00000597136 SLC51AQ86UW1 340 aa18.94■□□□□ 0.62
TRIM28-207ENST00000597136 CLUAP1Q96AJ1 413 aa18.94■□□□□ 0.62
TRIM28-207ENST00000597136 API5Q9BZZ5 524 aaKnown RBP18.94■□□□□ 0.62
TRIM28-207ENST00000597136 CDHR2Q9BYE9 1310 aa18.94■□□□□ 0.62
TRIM28-207ENST00000597136 ALDH1L1O75891 902 aa18.93■□□□□ 0.62
TRIM28-207ENST00000597136 HOXA10P31260 410 aaPredicted RBP18.93■□□□□ 0.62
TRIM28-207ENST00000597136 RPGRQ92834 1020 aaKnown RBP18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 316.1 ms