RNA–Protein interactions for RNA: ENST00000592911.5

SMAD4-215, Transcript of SMAD family member 4, human

TSL 5

Gene SMAD4, Length 475 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMAD4-215	ENST00000592911	TBC1D2B	Q9UPU7	963 aa		11.72	□□□□□ -0.53
SMAD4-215	ENST00000592911	IBTK	Q9P2D0	1353 aa	Predicted RBP	11.71	□□□□□ -0.53
SMAD4-215	ENST00000592911	HMOX1	P09601	288 aa		11.71	□□□□□ -0.53
SMAD4-215	ENST00000592911	EAPP	Q56P03	285 aa	Predicted RBP	11.71	□□□□□ -0.53
SMAD4-215	ENST00000592911	IFNLR1	Q8IU57	520 aa	Predicted RBP	11.71	□□□□□ -0.53
SMAD4-215	ENST00000592911	JDP2	Q8WYK2	163 aa		11.71	□□□□□ -0.53
SMAD4-215	ENST00000592911	DDX21	Q9NR30	783 aa	Known RBP eCLIP	11.71	□□□□□ -0.53
SMAD4-215	ENST00000592911	ZNF541	Q9H0D2	1346 aa		11.7	□□□□□ -0.54
SMAD4-215	ENST00000592911	LMOD1	P29536	600 aa	Predicted RBP	11.7	□□□□□ -0.54
SMAD4-215	ENST00000592911	CRY2	Q49AN0	593 aa		11.7	□□□□□ -0.54
SMAD4-215	ENST00000592911	USP50	Q70EL3	339 aa	Predicted RBP	11.7	□□□□□ -0.54
SMAD4-215	ENST00000592911	IL17RE	Q8NFR9	667 aa		11.7	□□□□□ -0.54
SMAD4-215	ENST00000592911	COL3A1	P02461	1466 aa	Predicted RBP	11.7	□□□□□ -0.54
SMAD4-215	ENST00000592911	LAMB4	A4D0S4	1761 aa		11.69	□□□□□ -0.54
SMAD4-215	ENST00000592911	KIF7	Q2M1P5	1343 aa		11.69	□□□□□ -0.54
SMAD4-215	ENST00000592911	SNRPA1	P09661	255 aa	Known RBP	11.69	□□□□□ -0.54
SMAD4-215	ENST00000592911	HSPA5	P11021	654 aa	Known RBP	11.69	□□□□□ -0.54
SMAD4-215	ENST00000592911	EIF6	P56537	245 aa	Known RBP	11.69	□□□□□ -0.54
SMAD4-215	ENST00000592911	FAM161A	Q3B820	660 aa		11.69	□□□□□ -0.54
SMAD4-215	ENST00000592911	PIP4P2	Q8N4L2	257 aa		11.69	□□□□□ -0.54
SMAD4-215	ENST00000592911	NYX	Q9GZU5	481 aa		11.69	□□□□□ -0.54
SMAD4-215	ENST00000592911	ABT1	Q9ULW3	272 aa	Known RBP	11.69	□□□□□ -0.54
SMAD4-215	ENST00000592911	RNF123	Q5XPI4	1314 aa		11.68	□□□□□ -0.54
SMAD4-215	ENST00000592911	CDHR2	Q9BYE9	1310 aa		11.68	□□□□□ -0.54
SMAD4-215	ENST00000592911	NUP98	P52948	1817 aa		11.68	□□□□□ -0.54
SMAD4-215	ENST00000592911	A1BG	P04217	495 aa		11.68	□□□□□ -0.54
SMAD4-215	ENST00000592911	CAPNS2	Q96L46	248 aa		11.68	□□□□□ -0.54
SMAD4-215	ENST00000592911	ZNF277	Q9NRM2	450 aa	Predicted RBP	11.68	□□□□□ -0.54
SMAD4-215	ENST00000592911	ZNF330	Q9Y3S2	320 aa	Predicted RBP	11.68	□□□□□ -0.54
SMAD4-215	ENST00000592911	BTBD11	A6QL63	1104 aa		11.67	□□□□□ -0.54
SMAD4-215	ENST00000592911	HTATSF1	O43719	755 aa	Known RBP	11.67	□□□□□ -0.54
SMAD4-215	ENST00000592911	HOXA10	P31260	410 aa	Predicted RBP	11.67	□□□□□ -0.54
SMAD4-215	ENST00000592911	MAP1S	Q66K74	1059 aa	Predicted RBP	11.67	□□□□□ -0.54
SMAD4-215	ENST00000592911	SYNE4	Q8N205	404 aa		11.67	□□□□□ -0.54
SMAD4-215	ENST00000592911	NIP7	Q9Y221	180 aa	Known RBP eCLIP	11.67	□□□□□ -0.54
SMAD4-215	ENST00000592911	TLL2	Q9Y6L7	1015 aa		11.67	□□□□□ -0.54
SMAD4-215	ENST00000592911	ERVV-1	B6SEH8	477 aa		11.66	□□□□□ -0.54
SMAD4-215	ENST00000592911	PER1	O15534	1290 aa	Predicted RBP	11.66	□□□□□ -0.54
SMAD4-215	ENST00000592911	BRPF1	P55201	1214 aa	Predicted RBP	11.66	□□□□□ -0.54
SMAD4-215	ENST00000592911	TRIM26	Q12899	539 aa	Predicted RBP	11.66	□□□□□ -0.54
SMAD4-215	ENST00000592911	GPR101	Q96P66	508 aa	Predicted RBP	11.66	□□□□□ -0.54
SMAD4-215	ENST00000592911	CASP8AP2	Q9UKL3	1982 aa		11.66	□□□□□ -0.54
SMAD4-215	ENST00000592911	LTBP1	Q14766	1721 aa		11.66	□□□□□ -0.54
SMAD4-215	ENST00000592911	PRKAR2A	P13861	404 aa	Known RBP	11.65	□□□□□ -0.54
SMAD4-215	ENST00000592911	CCDC24	Q8N4L8	307 aa		11.65	□□□□□ -0.54
SMAD4-215	ENST00000592911	ZC3H15	Q8WU90	426 aa	Known RBP	11.65	□□□□□ -0.54
SMAD4-215	ENST00000592911	GTF2E1	P29083	439 aa	Predicted RBP	11.64	□□□□□ -0.55
SMAD4-215	ENST00000592911	SCNN1D	P51172	638 aa		11.64	□□□□□ -0.55
SMAD4-215	ENST00000592911	CRAMP1	Q96RY5	1269 aa		11.64	□□□□□ -0.55
SMAD4-215	ENST00000592911	ADARB2	Q9NS39	739 aa	Known RBP	11.64	□□□□□ -0.55
SMAD4-215	ENST00000592911	USP16	Q9Y5T5	823 aa		11.64	□□□□□ -0.55
SMAD4-215	ENST00000592911	MNX1	P50219	401 aa	Predicted RBP	11.63	□□□□□ -0.55
SMAD4-215	ENST00000592911	SAPCD2	Q86UD0	394 aa		11.63	□□□□□ -0.55
SMAD4-215	ENST00000592911	SUPT20H	Q8NEM7	779 aa		11.63	□□□□□ -0.55
SMAD4-215	ENST00000592911	RTF1	Q92541	710 aa	Known RBP	11.63	□□□□□ -0.55
SMAD4-215	ENST00000592911	TMX4	Q9H1E5	349 aa	Predicted RBP	11.63	□□□□□ -0.55
SMAD4-215	ENST00000592911	PGAP2	Q9UHJ9	254 aa		11.63	□□□□□ -0.55
SMAD4-215	ENST00000592911	CCDC85C	A6NKD9	419 aa		11.62	□□□□□ -0.55
SMAD4-215	ENST00000592911	CST9	Q5W186	159 aa		11.62	□□□□□ -0.55
SMAD4-215	ENST00000592911	NIM1K	Q8IY84	436 aa		11.62	□□□□□ -0.55
SMAD4-215	ENST00000592911	LARGE2	Q8N3Y3	721 aa		11.62	□□□□□ -0.55
SMAD4-215	ENST00000592911	RPGR	Q92834	1020 aa	Known RBP	11.62	□□□□□ -0.55
SMAD4-215	ENST00000592911	AKAP11	Q9UKA4	1901 aa		11.62	□□□□□ -0.55
SMAD4-215	ENST00000592911	ANKRD36C	Q5JPF3	1778 aa		11.62	□□□□□ -0.55
SMAD4-215	ENST00000592911	ERBB4	Q15303	1308 aa		11.61	□□□□□ -0.55
SMAD4-215	ENST00000592911	U2SURP	O15042	1029 aa	Known RBP	11.61	□□□□□ -0.55
SMAD4-215	ENST00000592911	NOG	Q13253	232 aa		11.61	□□□□□ -0.55
SMAD4-215	ENST00000592911	PNISR	Q8TF01	805 aa	Known RBP	11.61	□□□□□ -0.55
SMAD4-215	ENST00000592911	RBM17	Q96I25	401 aa	Known RBP	11.61	□□□□□ -0.55
SMAD4-215	ENST00000592911	CFAP53	Q96M91	514 aa		11.61	□□□□□ -0.55
SMAD4-215	ENST00000592911	SAGE1	Q9NXZ1	904 aa		11.61	□□□□□ -0.55
SMAD4-215	ENST00000592911	GPRC5D	Q9NZD1	345 aa		11.61	□□□□□ -0.55
SMAD4-215	ENST00000592911	NUDC	Q9Y266	331 aa		11.61	□□□□□ -0.55
SMAD4-215	ENST00000592911	KDM3B	Q7LBC6	1761 aa		11.6	□□□□□ -0.55
SMAD4-215	ENST00000592911	COL4A5	P29400	1685 aa		11.6	□□□□□ -0.55
SMAD4-215	ENST00000592911	NBPF26	B4DH59	902 aa		11.6	□□□□□ -0.55
SMAD4-215	ENST00000592911	CYP4F22	Q6NT55	531 aa		11.6	□□□□□ -0.55
SMAD4-215	ENST00000592911	NBPF10	Q6P3W6	841 aa	Known RBP	11.6	□□□□□ -0.55
SMAD4-215	ENST00000592911	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	11.6	□□□□□ -0.55
SMAD4-215	ENST00000592911	NBPF15	Q8N660	670 aa		11.6	□□□□□ -0.55
SMAD4-215	ENST00000592911	RTFDC1	Q9BY42	306 aa	Predicted RBP	11.6	□□□□□ -0.55
SMAD4-215	ENST00000592911	RSPH6A	Q9H0K4	717 aa		11.6	□□□□□ -0.55
SMAD4-215	ENST00000592911	MAP3K15	Q6ZN16	1313 aa		11.6	□□□□□ -0.55
SMAD4-215	ENST00000592911	EPS15	P42566	896 aa		11.59	□□□□□ -0.55
SMAD4-215	ENST00000592911	PARP10	Q53GL7	1025 aa		11.59	□□□□□ -0.55
SMAD4-215	ENST00000592911	MCOLN1	Q9GZU1	580 aa		11.59	□□□□□ -0.55
SMAD4-215	ENST00000592911	ZNRF3	Q9ULT6	936 aa		11.59	□□□□□ -0.55
SMAD4-215	ENST00000592911	GJA3	Q9Y6H8	435 aa		11.59	□□□□□ -0.55
SMAD4-215	ENST00000592911	ABCC12	Q96J65	1359 aa		11.58	□□□□□ -0.56
SMAD4-215	ENST00000592911	PPEF1	O14829	653 aa	Predicted RBP	11.58	□□□□□ -0.56
SMAD4-215	ENST00000592911	KCNQ3	O43525	872 aa		11.58	□□□□□ -0.56
SMAD4-215	ENST00000592911	PRKAR2B	P31323	418 aa		11.58	□□□□□ -0.56
SMAD4-215	ENST00000592911	TNIP1	Q15025	636 aa		11.58	□□□□□ -0.56
SMAD4-215	ENST00000592911	TAF7	Q15545	349 aa	Predicted RBP	11.58	□□□□□ -0.56
SMAD4-215	ENST00000592911	KIF6	Q6ZMV9	814 aa		11.58	□□□□□ -0.56
SMAD4-215	ENST00000592911	CDC37L1	Q7L3B6	337 aa		11.58	□□□□□ -0.56
SMAD4-215	ENST00000592911	TMC4	Q7Z404	712 aa		11.58	□□□□□ -0.56
SMAD4-215	ENST00000592911	PPP1R42	Q7Z4L9	355 aa		11.58	□□□□□ -0.56
SMAD4-215	ENST00000592911	ATP6V0A2	Q9Y487	856 aa		11.58	□□□□□ -0.56
SMAD4-215	ENST00000592911	PPIP5K2	O43314	1243 aa		11.57	□□□□□ -0.56

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