RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 TGFB2P61812 414 aa11.88□□□□□ -0.51
VPS35-206ENST00000565228 CACNB1Q02641 598 aaPredicted RBP11.88□□□□□ -0.51
VPS35-206ENST00000565228 NBPF5PQ86XG9 351 aaPredicted RBP11.88□□□□□ -0.51
VPS35-206ENST00000565228 PI4KAP1Q8N8J0 262 aa11.88□□□□□ -0.51
VPS35-206ENST00000565228 SSH1Q8WYL5 1049 aa11.88□□□□□ -0.51
VPS35-206ENST00000565228 BCL2L13Q9BXK5 485 aa11.88□□□□□ -0.51
VPS35-206ENST00000565228 ARFGEF1Q9Y6D6 1849 aa11.88□□□□□ -0.51
VPS35-206ENST00000565228 F6X3S4 739 aa11.87□□□□□ -0.51
VPS35-206ENST00000565228 PRELPP51888 382 aa11.87□□□□□ -0.51
VPS35-206ENST00000565228 FLIIQ13045 1269 aa11.87□□□□□ -0.51
VPS35-206ENST00000565228 CNBD1Q8NA66 436 aa11.87□□□□□ -0.51
VPS35-206ENST00000565228 MYD88Q99836 296 aa11.87□□□□□ -0.51
VPS35-206ENST00000565228 ZNF652Q9Y2D9 606 aa11.87□□□□□ -0.51
VPS35-206ENST00000565228 MAP3K2Q9Y2U5 619 aa11.87□□□□□ -0.51
VPS35-206ENST00000565228 CHD4Q14839 1912 aa11.86□□□□□ -0.51
VPS35-206ENST00000565228 CWF19L2Q2TBE0 894 aaKnown RBP11.86□□□□□ -0.51
VPS35-206ENST00000565228 OLFM4Q6UX06 510 aa11.86□□□□□ -0.51
VPS35-206ENST00000565228 KSR2Q6VAB6 950 aa11.86□□□□□ -0.51
VPS35-206ENST00000565228 NPM2Q86SE8 214 aaKnown RBP11.86□□□□□ -0.51
VPS35-206ENST00000565228 C2CD5Q86YS7 1000 aa11.86□□□□□ -0.51
VPS35-206ENST00000565228 METTL22Q9BUU2 404 aaPredicted RBP11.86□□□□□ -0.51
VPS35-206ENST00000565228 BRIP1Q9BX63 1249 aa11.86□□□□□ -0.51
VPS35-206ENST00000565228 TNNQ9UQP3 1299 aa11.86□□□□□ -0.51
VPS35-206ENST00000565228 IBTKQ9P2D0 1353 aaPredicted RBP11.86□□□□□ -0.51
VPS35-206ENST00000565228 ZBED9Q6R2W3 1325 aa11.86□□□□□ -0.51
VPS35-206ENST00000565228 SRGNP10124 158 aa11.85□□□□□ -0.51
VPS35-206ENST00000565228 HCLS1P14317 486 aaPredicted RBP11.85□□□□□ -0.51
VPS35-206ENST00000565228 RIC3Q7Z5B4 369 aa11.85□□□□□ -0.51
VPS35-206ENST00000565228 PELP1Q8IZL8 1130 aaKnown RBP11.85□□□□□ -0.51
VPS35-206ENST00000565228 TRIM28Q13263 835 aaKnown RBP11.84□□□□□ -0.51
VPS35-206ENST00000565228 CRY2Q49AN0 593 aa11.84□□□□□ -0.51
VPS35-206ENST00000565228 RTL5Q5HYW3 569 aaPredicted RBP11.84□□□□□ -0.51
VPS35-206ENST00000565228 SLC10A5Q5PT55 438 aa11.84□□□□□ -0.51
VPS35-206ENST00000565228 TPTE2Q6XPS3 522 aa11.84□□□□□ -0.51
VPS35-206ENST00000565228 FAM89AQ96GI7 184 aa11.84□□□□□ -0.51
VPS35-206ENST00000565228 UTP14AQ9BVJ6 771 aaKnown RBP11.84□□□□□ -0.51
VPS35-206ENST00000565228 SBF1O95248 1867 aa11.84□□□□□ -0.51
VPS35-206ENST00000565228 SNED1Q8TER0 1413 aa11.84□□□□□ -0.51
VPS35-206ENST00000565228 RARSP54136 660 aaKnown RBP11.83□□□□□ -0.52
VPS35-206ENST00000565228 CASP7P55210 303 aa11.83□□□□□ -0.52
VPS35-206ENST00000565228 GPR162Q16538 588 aa11.83□□□□□ -0.52
VPS35-206ENST00000565228 PARP10Q53GL7 1025 aa11.83□□□□□ -0.52
VPS35-206ENST00000565228 BEND3Q5T5X7 828 aa11.83□□□□□ -0.52
VPS35-206ENST00000565228 C7orf43Q8WVR3 580 aa11.83□□□□□ -0.52
VPS35-206ENST00000565228 STK31Q9BXU1 1019 aa11.83□□□□□ -0.52
VPS35-206ENST00000565228 BCS1LQ9Y276 419 aa11.83□□□□□ -0.52
VPS35-206ENST00000565228 RIC1Q4ADV7 1423 aa11.83□□□□□ -0.52
VPS35-206ENST00000565228 NEURL1BA8MQ27 555 aa11.82□□□□□ -0.52
VPS35-206ENST00000565228 BCAR3O75815 825 aa11.82□□□□□ -0.52
VPS35-206ENST00000565228 ST5P78524 1137 aa11.82□□□□□ -0.52
VPS35-206ENST00000565228 PIM2Q9P1W9 311 aa11.82□□□□□ -0.52
VPS35-206ENST00000565228 TRMT112Q9UI30 125 aaKnown RBP11.82□□□□□ -0.52
VPS35-206ENST00000565228 FER1L6Q2WGJ9 1857 aa11.82□□□□□ -0.52
VPS35-206ENST00000565228 CCDC88AQ3V6T2 1871 aa11.81□□□□□ -0.52
VPS35-206ENST00000565228 H0YIN7 160 aa11.81□□□□□ -0.52
VPS35-206ENST00000565228 FKBP5Q13451 457 aaPredicted RBP11.81□□□□□ -0.52
VPS35-206ENST00000565228 HSP90AB3PQ58FF7 597 aa11.81□□□□□ -0.52
VPS35-206ENST00000565228 DNAAF4Q8WXU2 420 aa11.81□□□□□ -0.52
VPS35-206ENST00000565228 ZNF622Q969S3 477 aaKnown RBP eCLIP11.81□□□□□ -0.52
VPS35-206ENST00000565228 RNF39Q9H2S5 420 aa11.81□□□□□ -0.52
VPS35-206ENST00000565228 ZNF219Q9P2Y4 722 aaPredicted RBP11.81□□□□□ -0.52
VPS35-206ENST00000565228 PCNTO95613 3336 aa11.81□□□□□ -0.52
VPS35-206ENST00000565228 PDE6BP35913 854 aa11.8□□□□□ -0.52
VPS35-206ENST00000565228 RASSF7Q02833 373 aa11.8□□□□□ -0.52
VPS35-206ENST00000565228 DALRD3Q5D0E6 543 aaKnown RBP11.8□□□□□ -0.52
VPS35-206ENST00000565228 STYK1Q6J9G0 422 aa11.8□□□□□ -0.52
VPS35-206ENST00000565228 PPP1R42Q7Z4L9 355 aa11.8□□□□□ -0.52
VPS35-206ENST00000565228 MASTLQ96GX5 879 aa11.8□□□□□ -0.52
VPS35-206ENST00000565228 NYXQ9GZU5 481 aa11.8□□□□□ -0.52
VPS35-206ENST00000565228 SH3TC1Q8TE82 1336 aa11.8□□□□□ -0.52
VPS35-206ENST00000565228 H7C1W4 665 aa11.79□□□□□ -0.52
VPS35-206ENST00000565228 NFKBIEO00221 500 aa11.79□□□□□ -0.52
VPS35-206ENST00000565228 PCCAP05165 728 aaPredicted RBP11.79□□□□□ -0.52
VPS35-206ENST00000565228 HOXA10P31260 410 aaPredicted RBP11.79□□□□□ -0.52
VPS35-206ENST00000565228 GCKRQ14397 625 aa11.79□□□□□ -0.52
VPS35-206ENST00000565228 ALDH1L2Q3SY69 923 aa11.79□□□□□ -0.52
VPS35-206ENST00000565228 EPHA10Q5JZY3 1008 aa11.79□□□□□ -0.52
VPS35-206ENST00000565228 PRPF40BQ6NWY9 871 aaKnown RBP11.79□□□□□ -0.52
VPS35-206ENST00000565228 TTLL6Q8N841 843 aa11.79□□□□□ -0.52
VPS35-206ENST00000565228 ZBTB38Q8NAP3 1195 aaPredicted RBP11.79□□□□□ -0.52
VPS35-206ENST00000565228 CCDC191Q8NCU4 936 aa11.79□□□□□ -0.52
VPS35-206ENST00000565228 KAZALD1Q96I82 304 aa11.79□□□□□ -0.52
VPS35-206ENST00000565228 CWC25Q9NXE8 425 aaPredicted RBP11.79□□□□□ -0.52
VPS35-206ENST00000565228 NOB1Q9ULX3 412 aaKnown RBP11.79□□□□□ -0.52
VPS35-206ENST00000565228 COL4A5P29400 1685 aa11.78□□□□□ -0.52
VPS35-206ENST00000565228 MYH3P11055 1940 aa11.78□□□□□ -0.52
VPS35-206ENST00000565228 IRS4O14654 1257 aaPredicted RBP11.78□□□□□ -0.52
VPS35-206ENST00000565228 C21orf2O43822 256 aa11.78□□□□□ -0.52
VPS35-206ENST00000565228 DDX58O95786 925 aaKnown RBP11.78□□□□□ -0.52
VPS35-206ENST00000565228 NPR1P16066 1061 aa11.78□□□□□ -0.52
VPS35-206ENST00000565228 GTF2E1P29083 439 aaPredicted RBP11.78□□□□□ -0.52
VPS35-206ENST00000565228 BRPF1P55201 1214 aaPredicted RBP11.78□□□□□ -0.52
VPS35-206ENST00000565228 CELF1Q92879 486 aaKnown RBP11.78□□□□□ -0.52
VPS35-206ENST00000565228 SEC31BQ9NQW1 1179 aa11.78□□□□□ -0.52
VPS35-206ENST00000565228 SMC4Q9NTJ3 1288 aa11.78□□□□□ -0.52
VPS35-206ENST00000565228 ABCC4O15439 1325 aa11.78□□□□□ -0.52
VPS35-206ENST00000565228 NPHP1O15259 732 aa11.77□□□□□ -0.53
VPS35-206ENST00000565228 SF3B3Q15393 1217 aaKnown RBP11.77□□□□□ -0.53
VPS35-206ENST00000565228 LINS1Q8NG48 757 aa11.77□□□□□ -0.53
VPS35-206ENST00000565228 CCDC85AQ96PX6 553 aaPredicted RBP11.77□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms