RNA–Protein interactions for RNA: ENST00000563683.5

RNF40-204, Transcript of ring finger protein 40, humanhuman

TSL 5 BASIC

Gene RNF40, Length 4,063 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-204ENST00000563683 AK2P54819 239 aa12.33□□□□□ -0.44
RNF40-204ENST00000563683 KIF6Q6ZMV9 814 aa12.33□□□□□ -0.44
RNF40-204ENST00000563683 LINS1Q8NG48 757 aa12.33□□□□□ -0.44
RNF40-204ENST00000563683 CNPY2Q9Y2B0 182 aa12.33□□□□□ -0.44
RNF40-204ENST00000563683 MROH2AA6NES4 1674 aa12.33□□□□□ -0.44
RNF40-204ENST00000563683 KAT6BQ8WYB5 2073 aa12.33□□□□□ -0.44
RNF40-204ENST00000563683 RNMTO43148 476 aaKnown RBP12.33□□□□□ -0.44
RNF40-204ENST00000563683 TRIM29Q14134 588 aa12.33□□□□□ -0.44
RNF40-204ENST00000563683 USP48Q86UV5 1035 aa12.33□□□□□ -0.44
RNF40-204ENST00000563683 SNRKQ9NRH2 765 aa12.33□□□□□ -0.44
RNF40-204ENST00000563683 RBM8AQ9Y5S9 174 aaKnown RBP12.33□□□□□ -0.44
RNF40-204ENST00000563683 ME1P48163 572 aa12.32□□□□□ -0.44
RNF40-204ENST00000563683 LRRC2Q9BYS8 371 aa12.32□□□□□ -0.44
RNF40-204ENST00000563683 ATP2B1P20020 1258 aa12.32□□□□□ -0.44
RNF40-204ENST00000563683 GUCY1B3Q02153 619 aa12.32□□□□□ -0.44
RNF40-204ENST00000563683 SH2B1Q9NRF2 756 aaPredicted RBP12.32□□□□□ -0.44
RNF40-204ENST00000563683 PALD1Q9ULE6 856 aa12.32□□□□□ -0.44
RNF40-204ENST00000563683 TULP1O00294 542 aaPredicted RBP12.32□□□□□ -0.44
RNF40-204ENST00000563683 GOLIM4O00461 696 aa12.32□□□□□ -0.44
RNF40-204ENST00000563683 KINO60870 393 aaKnown RBP12.32□□□□□ -0.44
RNF40-204ENST00000563683 ALDH1L1O75891 902 aa12.32□□□□□ -0.44
RNF40-204ENST00000563683 KRT32Q14532 448 aa12.32□□□□□ -0.44
RNF40-204ENST00000563683 CKAP2LQ8IYA6 745 aa12.32□□□□□ -0.44
RNF40-204ENST00000563683 TSC1Q92574 1164 aa12.32□□□□□ -0.44
RNF40-204ENST00000563683 SNRPA1P09661 255 aaKnown RBP12.32□□□□□ -0.44
RNF40-204ENST00000563683 NUP62CLQ9H1M0 184 aa12.32□□□□□ -0.44
RNF40-204ENST00000563683 IFIT1P09914 478 aaKnown RBP12.31□□□□□ -0.44
RNF40-204ENST00000563683 EIF4A1P60842 406 aaKnown RBP12.31□□□□□ -0.44
RNF40-204ENST00000563683 ATP2B3Q16720 1220 aa12.31□□□□□ -0.44
RNF40-204ENST00000563683 RRP12Q5JTH9 1297 aaKnown RBP12.31□□□□□ -0.44
RNF40-204ENST00000563683 BICC1Q9H694 974 aaKnown RBP12.31□□□□□ -0.44
RNF40-204ENST00000563683 HCLS1P14317 486 aaPredicted RBP12.31□□□□□ -0.44
RNF40-204ENST00000563683 CCT2P78371 535 aaKnown RBP12.31□□□□□ -0.44
RNF40-204ENST00000563683 AKAP17AQ02040 695 aaKnown RBP12.31□□□□□ -0.44
RNF40-204ENST00000563683 ZSCAN22P10073 491 aaPredicted RBP12.31□□□□□ -0.44
RNF40-204ENST00000563683 GIMAP6Q6P9H5 292 aa12.31□□□□□ -0.44
RNF40-204ENST00000563683 VPS37DQ86XT2 251 aa12.31□□□□□ -0.44
RNF40-204ENST00000563683 UNC5CLQ8IV45 518 aa12.31□□□□□ -0.44
RNF40-204ENST00000563683 TMEM87AQ8NBN3 555 aa12.31□□□□□ -0.44
RNF40-204ENST00000563683 A2ML1A8K2U0 1454 aa12.3□□□□□ -0.44
RNF40-204ENST00000563683 LMBR1LQ6UX01 489 aa12.3□□□□□ -0.44
RNF40-204ENST00000563683 DDX17Q92841 729 aaKnown RBP12.3□□□□□ -0.44
RNF40-204ENST00000563683 OSBPL3Q9H4L5 887 aa12.3□□□□□ -0.44
RNF40-204ENST00000563683 LMTK2Q8IWU2 1503 aa12.3□□□□□ -0.44
RNF40-204ENST00000563683 NMIQ13287 307 aaPredicted RBP12.3□□□□□ -0.44
RNF40-204ENST00000563683 STK38Q15208 465 aa12.3□□□□□ -0.44
RNF40-204ENST00000563683 KIDINS220Q9ULH0 1771 aa12.3□□□□□ -0.44
RNF40-204ENST00000563683 ARHGEF10O15013 1369 aa12.3□□□□□ -0.44
RNF40-204ENST00000563683 IDH1O75874 414 aaKnown RBP12.29□□□□□ -0.44
RNF40-204ENST00000563683 UBE2HP62256 183 aa12.29□□□□□ -0.44
RNF40-204ENST00000563683 DNM1Q05193 864 aaKnown RBP12.29□□□□□ -0.44
RNF40-204ENST00000563683 RASSF8Q8NHQ8 419 aa12.29□□□□□ -0.44
RNF40-204ENST00000563683 LRRC7Q96NW7 1537 aa12.29□□□□□ -0.44
RNF40-204ENST00000563683 GADD45BO75293 160 aaPredicted RBP12.29□□□□□ -0.44
RNF40-204ENST00000563683 GPTP24298 496 aa12.29□□□□□ -0.44
RNF40-204ENST00000563683 TBC1D2BQ9UPU7 963 aa12.29□□□□□ -0.44
RNF40-204ENST00000563683 USP6P35125 1406 aa12.29□□□□□ -0.44
RNF40-204ENST00000563683 ALKQ9UM73 1620 aa12.29□□□□□ -0.44
RNF40-204ENST00000563683 MAP3K11Q16584 847 aa12.29□□□□□ -0.44
RNF40-204ENST00000563683 KIAA1524Q8TCG1 905 aa12.29□□□□□ -0.44
RNF40-204ENST00000563683 OGFRQ9NZT2 677 aa12.29□□□□□ -0.44
RNF40-204ENST00000563683 CDC42BPGQ6DT37 1551 aa12.28□□□□□ -0.44
RNF40-204ENST00000563683 SPDYE4A6NLX3 237 aa12.28□□□□□ -0.44
RNF40-204ENST00000563683 ZNF771Q7L3S4 317 aaPredicted RBP12.28□□□□□ -0.44
RNF40-204ENST00000563683 ANKRD7Q92527 254 aa12.28□□□□□ -0.44
RNF40-204ENST00000563683 DDX21Q9NR30 783 aaKnown RBP eCLIP12.28□□□□□ -0.44
RNF40-204ENST00000563683 NDUFB9Q9Y6M9 179 aa12.28□□□□□ -0.44
RNF40-204ENST00000563683 PPLO60437 1756 aa12.28□□□□□ -0.44
RNF40-204ENST00000563683 RIOK3O14730 519 aaKnown RBP12.28□□□□□ -0.44
RNF40-204ENST00000563683 IGSF1Q8N6C5 1336 aa12.28□□□□□ -0.44
RNF40-204ENST00000563683 SGSM2O43147 1006 aa12.28□□□□□ -0.44
RNF40-204ENST00000563683 SYT1P21579 422 aa12.28□□□□□ -0.44
RNF40-204ENST00000563683 HAND2P61296 217 aa12.28□□□□□ -0.44
RNF40-204ENST00000563683 MROH1Q8NDA8 1641 aa12.28□□□□□ -0.44
RNF40-204ENST00000563683 SYCP1Q15431 976 aa12.27□□□□□ -0.44
RNF40-204ENST00000563683 METTL24Q5JXM2 366 aa12.27□□□□□ -0.44
RNF40-204ENST00000563683 ZNF790Q6PG37 636 aa12.27□□□□□ -0.44
RNF40-204ENST00000563683 C17orf53Q8N3J3 647 aaPredicted RBP12.27□□□□□ -0.44
RNF40-204ENST00000563683 SSH3Q8TE77 659 aa12.27□□□□□ -0.44
RNF40-204ENST00000563683 BRF1Q92994 677 aa12.27□□□□□ -0.44
RNF40-204ENST00000563683 FAM227BQ96M60 508 aa12.27□□□□□ -0.44
RNF40-204ENST00000563683 NEK1Q96PY6 1258 aa12.27□□□□□ -0.44
RNF40-204ENST00000563683 TTC41PQ6P2S7 1318 aa12.27□□□□□ -0.44
RNF40-204ENST00000563683 RAB11FIP4Q86YS3 637 aa12.27□□□□□ -0.45
RNF40-204ENST00000563683 CCDC34Q96HJ3 373 aa12.27□□□□□ -0.45
RNF40-204ENST00000563683 CFAP45Q9UL16 551 aa12.27□□□□□ -0.45
RNF40-204ENST00000563683 SNX14Q9Y5W7 946 aa12.27□□□□□ -0.45
RNF40-204ENST00000563683 RGS12O14924 1447 aa12.27□□□□□ -0.45
RNF40-204ENST00000563683 SSH2Q76I76 1423 aa12.27□□□□□ -0.45
RNF40-204ENST00000563683 EPB41L2O43491 1005 aaKnown RBP12.27□□□□□ -0.45
RNF40-204ENST00000563683 ZNF396Q96N95 335 aaPredicted RBP12.27□□□□□ -0.45
RNF40-204ENST00000563683 CDK12Q9NYV4 1490 aaPredicted RBP12.27□□□□□ -0.45
RNF40-204ENST00000563683 ATP10DQ9P241 1426 aa12.27□□□□□ -0.45
RNF40-204ENST00000563683 ERICH2A1L162 156 aa12.27□□□□□ -0.45
RNF40-204ENST00000563683 CTIFO43310 598 aaKnown RBP12.27□□□□□ -0.45
RNF40-204ENST00000563683 SUCLG2Q96I99 432 aa12.27□□□□□ -0.45
RNF40-204ENST00000563683 SCAND2PQ9GZW5 306 aaPredicted RBP12.27□□□□□ -0.45
RNF40-204ENST00000563683 TMOD3Q9NYL9 352 aa12.27□□□□□ -0.45
RNF40-204ENST00000563683 U3KPZ7 1027 aaPredicted RBP12.27□□□□□ -0.45
RNF40-204ENST00000563683 DHX16O60231 1041 aaKnown RBP12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms