RNA–Protein interactions for RNA: ENST00000559556.5

TPM1-220, Transcript of tropomyosin 1, humanhuman

APPRIS ALT1 TSL 2 BASIC

Gene TPM1, Length 977 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-220ENST00000559556 PSME4Q14997 1843 aa17.29■□□□□ 0.36
TPM1-220ENST00000559556 FZD9O00144 591 aa17.29■□□□□ 0.36
TPM1-220ENST00000559556 MYL6BP14649 208 aa17.28■□□□□ 0.36
TPM1-220ENST00000559556 HOXA10P31260 410 aaPredicted RBP17.28■□□□□ 0.36
TPM1-220ENST00000559556 CC2D2BQ6DHV5 1058 aa17.28■□□□□ 0.36
TPM1-220ENST00000559556 SYNE4Q8N205 404 aa17.28■□□□□ 0.36
TPM1-220ENST00000559556 ZBTB3Q9H5J0 574 aa17.28■□□□□ 0.36
TPM1-220ENST00000559556 CNTNAP1P78357 1384 aa17.28■□□□□ 0.36
TPM1-220ENST00000559556 NTSR2O95665 410 aa17.27■□□□□ 0.36
TPM1-220ENST00000559556 GPTP24298 496 aa17.27■□□□□ 0.36
TPM1-220ENST00000559556 GIGYF2Q6Y7W6 1299 aaKnown RBP17.27■□□□□ 0.36
TPM1-220ENST00000559556 ZNF34Q8IZ26 560 aa17.27■□□□□ 0.36
TPM1-220ENST00000559556 RPGRQ92834 1020 aaKnown RBP17.27■□□□□ 0.36
TPM1-220ENST00000559556 HACL1Q9UJ83 578 aa17.27■□□□□ 0.36
TPM1-220ENST00000559556 CACNA1FO60840 1977 aa17.26■□□□□ 0.35
TPM1-220ENST00000559556 LRP10Q7Z4F1 713 aa17.26■□□□□ 0.35
TPM1-220ENST00000559556 GPC2Q8N158 579 aa17.26■□□□□ 0.35
TPM1-220ENST00000559556 TSPYL4Q9UJ04 414 aa17.26■□□□□ 0.35
TPM1-220ENST00000559556 RNF123Q5XPI4 1314 aa17.25■□□□□ 0.35
TPM1-220ENST00000559556 ITGBL1O95965 494 aaPredicted RBP17.25■□□□□ 0.35
TPM1-220ENST00000559556 EPHX2P34913 555 aa17.25■□□□□ 0.35
TPM1-220ENST00000559556 GRIPAP1Q4V328 841 aa17.25■□□□□ 0.35
TPM1-220ENST00000559556 SUSD4Q5VX71 490 aa17.25■□□□□ 0.35
TPM1-220ENST00000559556 MKRN1Q9UHC7 482 aaKnown RBP17.25■□□□□ 0.35
TPM1-220ENST00000559556 SPEF2Q9C093 1822 aa17.24■□□□□ 0.35
TPM1-220ENST00000559556 PARP10Q53GL7 1025 aa17.24■□□□□ 0.35
TPM1-220ENST00000559556 EAPPQ56P03 285 aaPredicted RBP17.24■□□□□ 0.35
TPM1-220ENST00000559556 PNMA8AQ86V59 439 aaPredicted RBP17.24■□□□□ 0.35
TPM1-220ENST00000559556 TNS4Q8IZW8 715 aa17.24■□□□□ 0.35
TPM1-220ENST00000559556 JDP2Q8WYK2 163 aa17.24■□□□□ 0.35
TPM1-220ENST00000559556 CRAMP1Q96RY5 1269 aa17.24■□□□□ 0.35
TPM1-220ENST00000559556 BABAM1Q9NWV8 329 aa17.24■□□□□ 0.35
TPM1-220ENST00000559556 PDIA6Q15084 440 aa17.23■□□□□ 0.35
TPM1-220ENST00000559556 PPP1R42Q7Z4L9 355 aa17.23■□□□□ 0.35
TPM1-220ENST00000559556 DUOX1Q9NRD9 1551 aa17.23■□□□□ 0.35
TPM1-220ENST00000559556 SCN9AQ15858 1988 aa17.22■□□□□ 0.35
TPM1-220ENST00000559556 TMEM88BA6NKF7 163 aa17.22■□□□□ 0.35
TPM1-220ENST00000559556 PPEF1O14829 653 aaPredicted RBP17.22■□□□□ 0.35
TPM1-220ENST00000559556 RIPK4P57078 832 aa17.22■□□□□ 0.35
TPM1-220ENST00000559556 RALBP1Q15311 655 aa17.22■□□□□ 0.35
TPM1-220ENST00000559556 C3orf67Q6ZVT6 689 aa17.22■□□□□ 0.35
TPM1-220ENST00000559556 RBM17Q96I25 401 aaKnown RBP17.22■□□□□ 0.35
TPM1-220ENST00000559556 TMPOP42166 694 aaKnown RBP17.21■□□□□ 0.35
TPM1-220ENST00000559556 LMOD3Q0VAK6 560 aa17.21■□□□□ 0.35
TPM1-220ENST00000559556 PROSER3Q2NL68 480 aa17.21■□□□□ 0.35
TPM1-220ENST00000559556 SLC51AQ86UW1 340 aa17.21■□□□□ 0.35
TPM1-220ENST00000559556 AKAP11Q9UKA4 1901 aa17.2■□□□□ 0.34
TPM1-220ENST00000559556 EIF6P56537 245 aaKnown RBP17.2■□□□□ 0.34
TPM1-220ENST00000559556 CLEC11AQ9Y240 323 aa17.2■□□□□ 0.34
TPM1-220ENST00000559556 CASP8AP2Q9UKL3 1982 aa17.2■□□□□ 0.34
TPM1-220ENST00000559556 ANXA1P04083 346 aa17.19■□□□□ 0.34
TPM1-220ENST00000559556 EIF2S2P20042 333 aaKnown RBP17.19■□□□□ 0.34
TPM1-220ENST00000559556 SLC10A5Q5PT55 438 aa17.19■□□□□ 0.34
TPM1-220ENST00000559556 LARGE2Q8N3Y3 721 aa17.19■□□□□ 0.34
TPM1-220ENST00000559556 NLRP3Q96P20 1036 aa17.19■□□□□ 0.34
TPM1-220ENST00000559556 ABCC4O15439 1325 aa17.19■□□□□ 0.34
TPM1-220ENST00000559556 SCNN1DP51172 638 aa17.18■□□□□ 0.34
TPM1-220ENST00000559556 MAP1SQ66K74 1059 aaPredicted RBP17.18■□□□□ 0.34
TPM1-220ENST00000559556 CNTROBQ8N137 903 aa17.18■□□□□ 0.34
TPM1-220ENST00000559556 UTP14AQ9BVJ6 771 aaKnown RBP17.18■□□□□ 0.34
TPM1-220ENST00000559556 GJA3Q9Y6H8 435 aa17.18■□□□□ 0.34
TPM1-220ENST00000559556 COL4A1P02462 1669 aa17.17■□□□□ 0.34
TPM1-220ENST00000559556 LMOD1P29536 600 aaPredicted RBP17.17■□□□□ 0.34
TPM1-220ENST00000559556 VEGFBP49765 207 aa17.17■□□□□ 0.34
TPM1-220ENST00000559556 HSP90AB3PQ58FF7 597 aa17.17■□□□□ 0.34
TPM1-220ENST00000559556 VPS33BQ9H267 617 aa17.17■□□□□ 0.34
TPM1-220ENST00000559556 ATP6V0A2Q9Y487 856 aa17.17■□□□□ 0.34
TPM1-220ENST00000559556 MYBBP1AQ9BQG0 1328 aaKnown RBP17.17■□□□□ 0.34
TPM1-220ENST00000559556 RASSF10A6NK89 507 aa17.16■□□□□ 0.34
TPM1-220ENST00000559556 FOXN1O15353 648 aa17.16■□□□□ 0.34
TPM1-220ENST00000559556 NIM1KQ8IY84 436 aa17.16■□□□□ 0.34
TPM1-220ENST00000559556 ZNF646O15015 1829 aaPredicted RBP17.16■□□□□ 0.34
TPM1-220ENST00000559556 TCERG1O14776 1098 aaKnown RBP17.15■□□□□ 0.34
TPM1-220ENST00000559556 PPIP5K2O43314 1243 aa17.15■□□□□ 0.34
TPM1-220ENST00000559556 CAPN15O75808 1086 aa17.15■□□□□ 0.34
TPM1-220ENST00000559556 COPS6Q7L5N1 327 aa17.15■□□□□ 0.34
TPM1-220ENST00000559556 NLRP10Q86W26 655 aa17.15■□□□□ 0.34
TPM1-220ENST00000559556 RTFDC1Q9BY42 306 aaPredicted RBP17.15■□□□□ 0.34
TPM1-220ENST00000559556 DDX21Q9NR30 783 aaKnown RBP eCLIP17.15■□□□□ 0.34
TPM1-220ENST00000559556 CHL1O00533 1208 aa17.14■□□□□ 0.33
TPM1-220ENST00000559556 EPS15P42566 896 aa17.14■□□□□ 0.33
TPM1-220ENST00000559556 AOC3Q16853 763 aa17.14■□□□□ 0.33
TPM1-220ENST00000559556 XAGE3Q8WTP9 111 aa17.14■□□□□ 0.33
TPM1-220ENST00000559556 TMX4Q9H1E5 349 aaPredicted RBP17.14■□□□□ 0.33
TPM1-220ENST00000559556 TCIRG1Q13488 830 aa17.13■□□□□ 0.33
TPM1-220ENST00000559556 KRT24Q2M2I5 525 aa17.13■□□□□ 0.33
TPM1-220ENST00000559556 USP50Q70EL3 339 aaPredicted RBP17.13■□□□□ 0.33
TPM1-220ENST00000559556 SUPT20HQ8NEM7 779 aa17.13■□□□□ 0.33
TPM1-220ENST00000559556 NECTIN2Q92692 538 aa17.13■□□□□ 0.33
TPM1-220ENST00000559556 PRDM10Q9NQV6 1147 aa17.13■□□□□ 0.33
TPM1-220ENST00000559556 TRIM35Q9UPQ4 493 aa17.13■□□□□ 0.33
TPM1-220ENST00000559556 SH3TC1Q8TE82 1336 aa17.13■□□□□ 0.33
TPM1-220ENST00000559556 BBOX1O75936 387 aa17.12■□□□□ 0.33
TPM1-220ENST00000559556 HCLS1P14317 486 aaPredicted RBP17.12■□□□□ 0.33
TPM1-220ENST00000559556 AIMP1Q12904 312 aaKnown RBP17.12■□□□□ 0.33
TPM1-220ENST00000559556 DEFB115Q30KQ5 88 aa17.12■□□□□ 0.33
TPM1-220ENST00000559556 SP8Q8IXZ3 490 aa17.12■□□□□ 0.33
TPM1-220ENST00000559556 CCDC146Q8IYE0 955 aa17.12■□□□□ 0.33
TPM1-220ENST00000559556 WBP1LQ9NX94 342 aa17.12■□□□□ 0.33
TPM1-220ENST00000559556 GPRC5DQ9NZD1 345 aa17.12■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 249.5 ms