RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 NYXQ9GZU5 481 aa22.32■■□□□ 1.16
SHMT2-225ENST00000556798 A0A0G2JLW4 131 aa22.31■■□□□ 1.16
SHMT2-225ENST00000556798 F6X3S4 739 aa22.31■■□□□ 1.16
SHMT2-225ENST00000556798 DPEP1P16444 411 aa22.31■■□□□ 1.16
SHMT2-225ENST00000556798 CHRNA5P30532 468 aa22.31■■□□□ 1.16
SHMT2-225ENST00000556798 RARSP54136 660 aaKnown RBP22.31■■□□□ 1.16
SHMT2-225ENST00000556798 PPP1R42Q7Z4L9 355 aa22.31■■□□□ 1.16
SHMT2-225ENST00000556798 UTP14AQ9BVJ6 771 aaKnown RBP22.31■■□□□ 1.16
SHMT2-225ENST00000556798 DNAAF4Q8WXU2 420 aa22.3■■□□□ 1.16
SHMT2-225ENST00000556798 TGFB2P61812 414 aa22.29■■□□□ 1.16
SHMT2-225ENST00000556798 BRIP1Q9BX63 1249 aa22.29■■□□□ 1.16
SHMT2-225ENST00000556798 IGKV5-2P06315 115 aa22.28■■□□□ 1.16
SHMT2-225ENST00000556798 NEXNQ0ZGT2 675 aa22.28■■□□□ 1.16
SHMT2-225ENST00000556798 CWF19L2Q2TBE0 894 aaKnown RBP22.28■■□□□ 1.16
SHMT2-225ENST00000556798 SYNE4Q8N205 404 aa22.28■■□□□ 1.16
SHMT2-225ENST00000556798 TRMT112Q9UI30 125 aaKnown RBP22.28■■□□□ 1.16
SHMT2-225ENST00000556798 TRIM28Q13263 835 aaKnown RBP22.27■■□□□ 1.16
SHMT2-225ENST00000556798 C2CD5Q86YS7 1000 aa22.27■■□□□ 1.16
SHMT2-225ENST00000556798 PELP1Q8IZL8 1130 aaKnown RBP22.27■■□□□ 1.16
SHMT2-225ENST00000556798 ARFGEF1Q9Y6D6 1849 aa22.27■■□□□ 1.15
SHMT2-225ENST00000556798 GOLGB1Q14789 3259 aaKnown RBP22.26■■□□□ 1.15
SHMT2-225ENST00000556798 MYH3P11055 1940 aa22.26■■□□□ 1.15
SHMT2-225ENST00000556798 PDE6BP35913 854 aa22.26■■□□□ 1.15
SHMT2-225ENST00000556798 RTL5Q5HYW3 569 aaPredicted RBP22.26■■□□□ 1.15
SHMT2-225ENST00000556798 CWC25Q9NXE8 425 aaPredicted RBP22.26■■□□□ 1.15
SHMT2-225ENST00000556798 PTPRCP08575 1304 aa22.26■■□□□ 1.15
SHMT2-225ENST00000556798 SH3TC1Q8TE82 1336 aa22.26■■□□□ 1.15
SHMT2-225ENST00000556798 RIC1Q4ADV7 1423 aa22.25■■□□□ 1.15
SHMT2-225ENST00000556798 NEURL1BA8MQ27 555 aa22.25■■□□□ 1.15
SHMT2-225ENST00000556798 BCAR3O75815 825 aa22.25■■□□□ 1.15
SHMT2-225ENST00000556798 KCNA3P22001 575 aa22.25■■□□□ 1.15
SHMT2-225ENST00000556798 SLC4A10Q6U841 1118 aa22.25■■□□□ 1.15
SHMT2-225ENST00000556798 CCDC191Q8NCU4 936 aa22.25■■□□□ 1.15
SHMT2-225ENST00000556798 JARID2Q92833 1246 aaPredicted RBP22.25■■□□□ 1.15
SHMT2-225ENST00000556798 FAM89AQ96GI7 184 aa22.25■■□□□ 1.15
SHMT2-225ENST00000556798 NOB1Q9ULX3 412 aaKnown RBP22.25■■□□□ 1.15
SHMT2-225ENST00000556798 H0YIN7 160 aa22.24■■□□□ 1.15
SHMT2-225ENST00000556798 RNF123Q5XPI4 1314 aa22.24■■□□□ 1.15
SHMT2-225ENST00000556798 TAF1P21675 1872 aa22.24■■□□□ 1.15
SHMT2-225ENST00000556798 HCLS1P14317 486 aaPredicted RBP22.23■■□□□ 1.15
SHMT2-225ENST00000556798 C3orf67Q6ZVT6 689 aa22.23■■□□□ 1.15
SHMT2-225ENST00000556798 LINS1Q8NG48 757 aa22.23■■□□□ 1.15
SHMT2-225ENST00000556798 SLX4Q8IY92 1834 aa22.22■■□□□ 1.15
SHMT2-225ENST00000556798 BRPF1P55201 1214 aaPredicted RBP22.22■■□□□ 1.15
SHMT2-225ENST00000556798 BEND3Q5T5X7 828 aa22.22■■□□□ 1.15
SHMT2-225ENST00000556798 KIF16BQ96L93 1317 aa22.22■■□□□ 1.15
SHMT2-225ENST00000556798 YBX3P16989 372 aaKnown RBP eCLIP22.21■■□□□ 1.152e-7■□□□□ 8.5
SHMT2-225ENST00000556798 ZBTB38Q8NAP3 1195 aaPredicted RBP22.21■■□□□ 1.15
SHMT2-225ENST00000556798 ZNF622Q969S3 477 aaKnown RBP eCLIP22.21■■□□□ 1.15
SHMT2-225ENST00000556798 PCCAP05165 728 aaPredicted RBP22.2■■□□□ 1.14
SHMT2-225ENST00000556798 SRGNP10124 158 aa22.2■■□□□ 1.14
SHMT2-225ENST00000556798 GPR162Q16538 588 aa22.2■■□□□ 1.14
SHMT2-225ENST00000556798 SLC10A5Q5PT55 438 aa22.2■■□□□ 1.14
SHMT2-225ENST00000556798 FRAT1Q92837 279 aaPredicted RBP22.2■■□□□ 1.14
SHMT2-225ENST00000556798 PIM2Q9P1W9 311 aa22.2■■□□□ 1.14
SHMT2-225ENST00000556798 BCS1LQ9Y276 419 aa22.2■■□□□ 1.14
SHMT2-225ENST00000556798 KLRG2A4D1S0 409 aaPredicted RBP22.19■■□□□ 1.14
SHMT2-225ENST00000556798 IRS4O14654 1257 aaPredicted RBP22.19■■□□□ 1.14
SHMT2-225ENST00000556798 GCKRQ14397 625 aa22.19■■□□□ 1.14
SHMT2-225ENST00000556798 PDZRN3Q9UPQ7 1066 aa22.19■■□□□ 1.14
SHMT2-225ENST00000556798 UBE3BQ7Z3V4 1068 aa22.18■■□□□ 1.14
SHMT2-225ENST00000556798 MASTLQ96GX5 879 aa22.18■■□□□ 1.14
SHMT2-225ENST00000556798 NLRP3Q96P20 1036 aa22.18■■□□□ 1.14
SHMT2-225ENST00000556798 SRCIN1Q9C0H9 1055 aa22.18■■□□□ 1.14
SHMT2-225ENST00000556798 NPR1P16066 1061 aa22.17■■□□□ 1.14
SHMT2-225ENST00000556798 CRY2Q49AN0 593 aa22.17■■□□□ 1.14
SHMT2-225ENST00000556798 DALRD3Q5D0E6 543 aaKnown RBP22.17■■□□□ 1.14
SHMT2-225ENST00000556798 API5Q9BZZ5 524 aaKnown RBP22.17■■□□□ 1.14
SHMT2-225ENST00000556798 TNNQ9UQP3 1299 aa22.17■■□□□ 1.14
SHMT2-225ENST00000556798 SPEF2Q9C093 1822 aa22.16■■□□□ 1.14
SHMT2-225ENST00000556798 STYK1Q6J9G0 422 aa22.16■■□□□ 1.14
SHMT2-225ENST00000556798 RPGRQ92834 1020 aaKnown RBP22.16■■□□□ 1.14
SHMT2-225ENST00000556798 CDHR2Q9BYE9 1310 aa22.15■■□□□ 1.14
SHMT2-225ENST00000556798 COL4A1P02462 1669 aa22.15■■□□□ 1.14
SHMT2-225ENST00000556798 DCAF8L1A6NGE4 600 aa22.15■■□□□ 1.14
SHMT2-225ENST00000556798 H7C1W4 665 aa22.15■■□□□ 1.14
SHMT2-225ENST00000556798 ALDH1L1O75891 902 aa22.15■■□□□ 1.14
SHMT2-225ENST00000556798 TTLL6Q8N841 843 aa22.15■■□□□ 1.14
SHMT2-225ENST00000556798 UTRNP46939 3433 aa22.15■■□□□ 1.14
SHMT2-225ENST00000556798 CHD4Q14839 1912 aa22.14■■□□□ 1.14
SHMT2-225ENST00000556798 TRIM27P14373 513 aa22.14■■□□□ 1.13
SHMT2-225ENST00000556798 ARHGAP45Q92619 1136 aa22.14■■□□□ 1.13
SHMT2-225ENST00000556798 RCAN3Q9UKA8 241 aa22.14■■□□□ 1.13
SHMT2-225ENST00000556798 IPO8O15397 1037 aaKnown RBP22.13■■□□□ 1.13
SHMT2-225ENST00000556798 CASP7P55210 303 aa22.13■■□□□ 1.13
SHMT2-225ENST00000556798 ZKSCAN2Q63HK3 967 aa22.13■■□□□ 1.13
SHMT2-225ENST00000556798 PRPF40BQ6NWY9 871 aaKnown RBP22.13■■□□□ 1.13
SHMT2-225ENST00000556798 ATF7IPQ6VMQ6 1270 aa22.13■■□□□ 1.13
SHMT2-225ENST00000556798 CNKSR1Q969H4 720 aa22.13■■□□□ 1.13
SHMT2-225ENST00000556798 ZNF219Q9P2Y4 722 aaPredicted RBP22.13■■□□□ 1.13
SHMT2-225ENST00000556798 ABCC4O15439 1325 aa22.12■■□□□ 1.13
SHMT2-225ENST00000556798 GRM8O00222 908 aa22.12■■□□□ 1.13
SHMT2-225ENST00000556798 CLUAP1Q96AJ1 413 aa22.12■■□□□ 1.13
SHMT2-225ENST00000556798 RBM17Q96I25 401 aaKnown RBP22.12■■□□□ 1.13
SHMT2-225ENST00000556798 CCDC85AQ96PX6 553 aaPredicted RBP22.12■■□□□ 1.13
SHMT2-225ENST00000556798 C9orf78Q9NZ63 289 aaPredicted RBP22.12■■□□□ 1.13
SHMT2-225ENST00000556798 FER1L6Q2WGJ9 1857 aa22.11■■□□□ 1.13
SHMT2-225ENST00000556798 CCDC88AQ3V6T2 1871 aa22.11■■□□□ 1.13
SHMT2-225ENST00000556798 PDE8AO60658 829 aa22.11■■□□□ 1.13
SHMT2-225ENST00000556798 HOXA10P31260 410 aaPredicted RBP22.11■■□□□ 1.13
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms