RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 WDR63Q8IWG1 891 aa13.3□□□□□ -0.28
CCDC88C-206ENST00000553437 ZNF526Q8TF50 670 aaPredicted RBP13.3□□□□□ -0.28
CCDC88C-206ENST00000553437 UTP14AQ9BVJ6 771 aaKnown RBP13.3□□□□□ -0.28
CCDC88C-206ENST00000553437 RNF181Q9P0P0 153 aa13.3□□□□□ -0.28
CCDC88C-206ENST00000553437 SALL2Q9Y467 1007 aaPredicted RBP13.3□□□□□ -0.28
CCDC88C-206ENST00000553437 RIC1Q4ADV7 1423 aa13.3□□□□□ -0.28
CCDC88C-206ENST00000553437 ARFGEF1Q9Y6D6 1849 aa13.29□□□□□ -0.28
CCDC88C-206ENST00000553437 LMNB1P20700 586 aa13.29□□□□□ -0.28
CCDC88C-206ENST00000553437 C3orf67Q6ZVT6 689 aa13.29□□□□□ -0.28
CCDC88C-206ENST00000553437 ISCA1Q9BUE6 129 aa13.29□□□□□ -0.28
CCDC88C-206ENST00000553437 PHAXQ9H814 394 aaKnown RBP13.29□□□□□ -0.28
CCDC88C-206ENST00000553437 GPBP1L1Q9HC44 474 aaPredicted RBP13.29□□□□□ -0.28
CCDC88C-206ENST00000553437 ZNF219Q9P2Y4 722 aaPredicted RBP13.29□□□□□ -0.28
CCDC88C-206ENST00000553437 COL11A2P13942 1736 aaPredicted RBP13.29□□□□□ -0.28
CCDC88C-206ENST00000553437 DLEC1Q9Y238 1755 aa13.29□□□□□ -0.28
CCDC88C-206ENST00000553437 HOXA10P31260 410 aaPredicted RBP13.28□□□□□ -0.28
CCDC88C-206ENST00000553437 CCDC30Q5VVM6 783 aa13.28□□□□□ -0.28
CCDC88C-206ENST00000553437 SYNE4Q8N205 404 aa13.28□□□□□ -0.28
CCDC88C-206ENST00000553437 CNKSR2Q8WXI2 1034 aa13.28□□□□□ -0.28
CCDC88C-206ENST00000553437 SPINK5Q9NQ38 1064 aaPredicted RBP13.28□□□□□ -0.28
CCDC88C-206ENST00000553437 PCNTO95613 3336 aa13.27□□□□□ -0.28
CCDC88C-206ENST00000553437 ALDH1B1P30837 517 aa13.27□□□□□ -0.29
CCDC88C-206ENST00000553437 TRIM28Q13263 835 aaKnown RBP13.27□□□□□ -0.29
CCDC88C-206ENST00000553437 CHMP4AQ9BY43 222 aa13.27□□□□□ -0.29
CCDC88C-206ENST00000553437 RNF123Q5XPI4 1314 aa13.27□□□□□ -0.29
CCDC88C-206ENST00000553437 LTBP3Q9NS15 1303 aa13.27□□□□□ -0.29
CCDC88C-206ENST00000553437 FANCIQ9NVI1 1328 aa13.27□□□□□ -0.29
CCDC88C-206ENST00000553437 ATP5J2-PTCD1G3V325 749 aa13.26□□□□□ -0.29
CCDC88C-206ENST00000553437 KIF3CO14782 793 aa13.26□□□□□ -0.29
CCDC88C-206ENST00000553437 NUP98P52948 1817 aa13.26□□□□□ -0.29
CCDC88C-206ENST00000553437 TWISTNBQ3B726 338 aaPredicted RBP13.26□□□□□ -0.29
CCDC88C-206ENST00000553437 SOGA3Q5TF21 947 aa13.26□□□□□ -0.29
CCDC88C-206ENST00000553437 OLFM4Q6UX06 510 aa13.26□□□□□ -0.29
CCDC88C-206ENST00000553437 TRMT112Q9UI30 125 aaKnown RBP13.26□□□□□ -0.29
CCDC88C-206ENST00000553437 TNRC6CQ9HCJ0 1690 aaKnown RBP13.25□□□□□ -0.29
CCDC88C-206ENST00000553437 ZNF521Q96K83 1311 aa13.25□□□□□ -0.29
CCDC88C-206ENST00000553437 ZC3H4Q9UPT8 1303 aaKnown RBP13.25□□□□□ -0.29
CCDC88C-206ENST00000553437 HCLS1P14317 486 aaPredicted RBP13.25□□□□□ -0.29
CCDC88C-206ENST00000553437 CCDC93Q567U6 631 aa13.25□□□□□ -0.29
CCDC88C-206ENST00000553437 ZNF428Q96B54 188 aa13.25□□□□□ -0.29
CCDC88C-206ENST00000553437 NLRP3Q96P20 1036 aa13.25□□□□□ -0.29
CCDC88C-206ENST00000553437 CRAMP1Q96RY5 1269 aa13.25□□□□□ -0.29
CCDC88C-206ENST00000553437 TAOK3Q9H2K8 898 aa13.25□□□□□ -0.29
CCDC88C-206ENST00000553437 SH3TC1Q8TE82 1336 aa13.24□□□□□ -0.29
CCDC88C-206ENST00000553437 TCERG1O14776 1098 aaKnown RBP13.24□□□□□ -0.29
CCDC88C-206ENST00000553437 VAMP4O75379 141 aa13.24□□□□□ -0.29
CCDC88C-206ENST00000553437 EXOSC9Q06265 439 aaKnown RBP13.24□□□□□ -0.29
CCDC88C-206ENST00000553437 GOLGA2Q08379 1002 aa13.24□□□□□ -0.29
CCDC88C-206ENST00000553437 RIC3Q7Z5B4 369 aa13.24□□□□□ -0.29
CCDC88C-206ENST00000553437 RPGRQ92834 1020 aaKnown RBP13.24□□□□□ -0.29
CCDC88C-206ENST00000553437 RBM17Q96I25 401 aaKnown RBP13.24□□□□□ -0.29
CCDC88C-206ENST00000553437 NMRK2Q9NPI5 230 aa13.24□□□□□ -0.29
CCDC88C-206ENST00000553437 SLX4Q8IY92 1834 aa13.24□□□□□ -0.29
CCDC88C-206ENST00000553437 SNED1Q8TER0 1413 aa13.23□□□□□ -0.29
CCDC88C-206ENST00000553437 PPP4R3CPQ6ZMV5 832 aa13.23□□□□□ -0.29
CCDC88C-206ENST00000553437 G2E3Q7L622 706 aa13.23□□□□□ -0.29
CCDC88C-206ENST00000553437 SLC51AQ86UW1 340 aa13.23□□□□□ -0.29
CCDC88C-206ENST00000553437 SP7Q8TDD2 431 aaPredicted RBP13.23□□□□□ -0.29
CCDC88C-206ENST00000553437 FAM89AQ96GI7 184 aa13.23□□□□□ -0.29
CCDC88C-206ENST00000553437 CCER2I3L3R5 266 aa13.22□□□□□ -0.29
CCDC88C-206ENST00000553437 HSPA6P17066 643 aa13.22□□□□□ -0.29
CCDC88C-206ENST00000553437 FKBP4Q02790 459 aaKnown RBP eCLIP13.22□□□□□ -0.29
CCDC88C-206ENST00000553437 RTKN2Q8IZC4 609 aa13.22□□□□□ -0.29
CCDC88C-206ENST00000553437 MYD88Q99836 296 aa13.22□□□□□ -0.29
CCDC88C-206ENST00000553437 METTL22Q9BUU2 404 aaPredicted RBP13.22□□□□□ -0.29
CCDC88C-206ENST00000553437 STK31Q9BXU1 1019 aa13.22□□□□□ -0.29
CCDC88C-206ENST00000553437 ABCC4O15439 1325 aa13.21□□□□□ -0.29
CCDC88C-206ENST00000553437 KDM2BQ8NHM5 1336 aa13.21□□□□□ -0.29
CCDC88C-206ENST00000553437 PI4KAP2A4QPH2 592 aa13.21□□□□□ -0.29
CCDC88C-206ENST00000553437 GLTPD2A6NH11 291 aa13.21□□□□□ -0.29
CCDC88C-206ENST00000553437 DDX58O95786 925 aaKnown RBP13.21□□□□□ -0.29
CCDC88C-206ENST00000553437 SLC4A2P04920 1241 aa13.21□□□□□ -0.29
CCDC88C-206ENST00000553437 CC2D2BQ6DHV5 1058 aa13.21□□□□□ -0.29
CCDC88C-206ENST00000553437 KSR2Q6VAB6 950 aa13.21□□□□□ -0.29
CCDC88C-206ENST00000553437 PI4KAP1Q8N8J0 262 aa13.21□□□□□ -0.29
CCDC88C-206ENST00000553437 ZNF277Q9NRM2 450 aaPredicted RBP13.21□□□□□ -0.29
CCDC88C-206ENST00000553437 MAP3K2Q9Y2U5 619 aa13.21□□□□□ -0.29
CCDC88C-206ENST00000553437 PPEF1O14829 653 aaPredicted RBP13.2□□□□□ -0.3
CCDC88C-206ENST00000553437 IGKV5-2P06315 115 aa13.2□□□□□ -0.3
CCDC88C-206ENST00000553437 SF3B3Q15393 1217 aaKnown RBP13.2□□□□□ -0.3
CCDC88C-206ENST00000553437 ZBTB38Q8NAP3 1195 aaPredicted RBP13.2□□□□□ -0.3
CCDC88C-206ENST00000553437 CCDC191Q8NCU4 936 aa13.2□□□□□ -0.3
CCDC88C-206ENST00000553437 PSMD1Q99460 953 aa13.2□□□□□ -0.3
CCDC88C-206ENST00000553437 MYH16Q9H6N6 1097 aa13.2□□□□□ -0.3
CCDC88C-206ENST00000553437 RRAGCQ9HB90 399 aa13.2□□□□□ -0.3
CCDC88C-206ENST00000553437 IRS4O14654 1257 aaPredicted RBP13.19□□□□□ -0.3
CCDC88C-206ENST00000553437 BBOX1O75936 387 aa13.19□□□□□ -0.3
CCDC88C-206ENST00000553437 RTL5Q5HYW3 569 aaPredicted RBP13.19□□□□□ -0.3
CCDC88C-206ENST00000553437 ATP6V0A2Q9Y487 856 aa13.19□□□□□ -0.3
CCDC88C-206ENST00000553437 ARFGEF2Q9Y6D5 1785 aa13.18□□□□□ -0.3
CCDC88C-206ENST00000553437 POTECB2RU33 542 aa13.18□□□□□ -0.3
CCDC88C-206ENST00000553437 TOMM70O94826 608 aa13.18□□□□□ -0.3
CCDC88C-206ENST00000553437 PCCAP05165 728 aaPredicted RBP13.18□□□□□ -0.3
CCDC88C-206ENST00000553437 FLIIQ13045 1269 aa13.18□□□□□ -0.3
CCDC88C-206ENST00000553437 GRAPQ13588 217 aa13.18□□□□□ -0.3
CCDC88C-206ENST00000553437 GRIPAP1Q4V328 841 aa13.18□□□□□ -0.3
CCDC88C-206ENST00000553437 DDX46Q7L014 1031 aaKnown RBP13.18□□□□□ -0.3
CCDC88C-206ENST00000553437 GRAPLQ8TC17 118 aaPredicted RBP13.18□□□□□ -0.3
CCDC88C-206ENST00000553437 CWC25Q9NXE8 425 aaPredicted RBP13.18□□□□□ -0.3
CCDC88C-206ENST00000553437 SBF1O95248 1867 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms