RNA–Protein interactions for RNA: ENST00000550841.1

NEK3-202, Transcript of NIMA related kinase 3, humanhuman

TSL 4

Gene NEK3, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-202ENST00000550841 SLC4A10Q6U841 1118 aa27.2■■□□□ 1.94
NEK3-202ENST00000550841 CWC25Q9NXE8 425 aaPredicted RBP27.2■■□□□ 1.94
NEK3-202ENST00000550841 IBTKQ9P2D0 1353 aaPredicted RBP27.2■■□□□ 1.94
NEK3-202ENST00000550841 ZKSCAN2Q63HK3 967 aa27.19■■□□□ 1.94
NEK3-202ENST00000550841 CD2APQ9Y5K6 639 aa27.19■■□□□ 1.94
NEK3-202ENST00000550841 ANKRD36CQ5JPF3 1778 aa27.19■■□□□ 1.94
NEK3-202ENST00000550841 ATF7IPQ6VMQ6 1270 aa27.18■■□□□ 1.94
NEK3-202ENST00000550841 NLGN2Q8NFZ4 835 aa27.18■■□□□ 1.94
NEK3-202ENST00000550841 TRMT112Q9UI30 125 aaKnown RBP27.18■■□□□ 1.94
NEK3-202ENST00000550841 IGKV5-2P06315 115 aa27.17■■□□□ 1.94
NEK3-202ENST00000550841 BEND3Q5T5X7 828 aa27.17■■□□□ 1.94
NEK3-202ENST00000550841 PRR5LQ6MZQ0 368 aa27.17■■□□□ 1.94
NEK3-202ENST00000550841 SRCIN1Q9C0H9 1055 aa27.17■■□□□ 1.94
NEK3-202ENST00000550841 NEURL1BA8MQ27 555 aa27.16■■□□□ 1.94
NEK3-202ENST00000550841 ALDH1L1O75891 902 aa27.16■■□□□ 1.94
NEK3-202ENST00000550841 NTSR2O95665 410 aa27.16■■□□□ 1.94
NEK3-202ENST00000550841 HSP90B1P14625 803 aaKnown RBP27.16■■□□□ 1.94
NEK3-202ENST00000550841 GOLGA6L2Q8N9W4 650 aaPredicted RBP27.16■■□□□ 1.94
NEK3-202ENST00000550841 BRIP1Q9BX63 1249 aa27.15■■□□□ 1.94
NEK3-202ENST00000550841 SH3TC1Q8TE82 1336 aa27.15■■□□□ 1.94
NEK3-202ENST00000550841 AFDNP55196 1824 aaKnown RBP27.14■■□□□ 1.94
NEK3-202ENST00000550841 NRXN2Q9P2S2 1712 aa27.14■■□□□ 1.94
NEK3-202ENST00000550841 MS4A1P11836 297 aa27.14■■□□□ 1.94
NEK3-202ENST00000550841 CCT4P50991 539 aaKnown RBP27.14■■□□□ 1.94
NEK3-202ENST00000550841 CWF19L2Q2TBE0 894 aaKnown RBP27.14■■□□□ 1.94
NEK3-202ENST00000550841 ZBTB38Q8NAP3 1195 aaPredicted RBP27.14■■□□□ 1.94
NEK3-202ENST00000550841 PDZRN3Q9UPQ7 1066 aa27.14■■□□□ 1.94
NEK3-202ENST00000550841 PCCAP05165 728 aaPredicted RBP27.13■■□□□ 1.93
NEK3-202ENST00000550841 PDE6BP35913 854 aa27.13■■□□□ 1.93
NEK3-202ENST00000550841 TGFB2P61812 414 aa27.13■■□□□ 1.93
NEK3-202ENST00000550841 GCKRQ14397 625 aa27.13■■□□□ 1.93
NEK3-202ENST00000550841 CHD4Q14839 1912 aa27.13■■□□□ 1.93
NEK3-202ENST00000550841 GRIN3BO60391 1043 aa27.12■■□□□ 1.93
NEK3-202ENST00000550841 TRIM27P14373 513 aa27.12■■□□□ 1.93
NEK3-202ENST00000550841 ERFEQ4G0M1 354 aa27.12■■□□□ 1.93
NEK3-202ENST00000550841 SLC10A5Q5PT55 438 aa27.12■■□□□ 1.93
NEK3-202ENST00000550841 NUTM1Q86Y26 1132 aa27.12■■□□□ 1.93
NEK3-202ENST00000550841 PXDNLA1KZ92 1463 aa27.11■■□□□ 1.93
NEK3-202ENST00000550841 C10orf71Q711Q0 1435 aa27.1■■□□□ 1.93
NEK3-202ENST00000550841 FAM89AQ96GI7 184 aa27.1■■□□□ 1.93
NEK3-202ENST00000550841 H7C1W4 665 aa27.09■■□□□ 1.93
NEK3-202ENST00000550841 FTSJ3Q8IY81 847 aaKnown RBP27.09■■□□□ 1.93
NEK3-202ENST00000550841 CCDC24Q8N4L8 307 aa27.09■■□□□ 1.93
NEK3-202ENST00000550841 C9orf78Q9NZ63 289 aaPredicted RBP27.09■■□□□ 1.93
NEK3-202ENST00000550841 INTS3Q68E01 1043 aaKnown RBP27.08■■□□□ 1.93
NEK3-202ENST00000550841 DZIP1LQ8IYY4 767 aaKnown RBP27.08■■□□□ 1.93
NEK3-202ENST00000550841 NLRP3Q96P20 1036 aa27.08■■□□□ 1.93
NEK3-202ENST00000550841 ABCC4O15439 1325 aa27.08■■□□□ 1.93
NEK3-202ENST00000550841 H0YIN7 160 aa27.06■■□□□ 1.92
NEK3-202ENST00000550841 IRS4O14654 1257 aaPredicted RBP27.06■■□□□ 1.92
NEK3-202ENST00000550841 CLUAP1Q96AJ1 413 aa27.06■■□□□ 1.92
NEK3-202ENST00000550841 CDHR2Q9BYE9 1310 aa27.06■■□□□ 1.92
NEK3-202ENST00000550841 RIC1Q4ADV7 1423 aa27.06■■□□□ 1.92
NEK3-202ENST00000550841 KIF13BQ9NQT8 1826 aa27.05■■□□□ 1.92
NEK3-202ENST00000550841 KLRG2A4D1S0 409 aaPredicted RBP27.05■■□□□ 1.92
NEK3-202ENST00000550841 GRM8O00222 908 aa27.05■■□□□ 1.92
NEK3-202ENST00000550841 YBX3P16989 372 aaKnown RBP eCLIP27.05■■□□□ 1.92
NEK3-202ENST00000550841 RTL5Q5HYW3 569 aaPredicted RBP27.05■■□□□ 1.92
NEK3-202ENST00000550841 HCLS1P14317 486 aaPredicted RBP27.04■■□□□ 1.92
NEK3-202ENST00000550841 C1QTNF8P60827 252 aa27.04■■□□□ 1.92
NEK3-202ENST00000550841 UBE3BQ7Z3V4 1068 aa27.04■■□□□ 1.92
NEK3-202ENST00000550841 C2CD5Q86YS7 1000 aa27.04■■□□□ 1.92
NEK3-202ENST00000550841 SYNE4Q8N205 404 aa27.04■■□□□ 1.92
NEK3-202ENST00000550841 HDAC5Q9UQL6 1122 aa27.04■■□□□ 1.92
NEK3-202ENST00000550841 UTRNP46939 3433 aa27.04■■□□□ 1.92
NEK3-202ENST00000550841 ABCC12Q96J65 1359 aa27.03■■□□□ 1.92
NEK3-202ENST00000550841 PDE8AO60658 829 aa27.02■■□□□ 1.92
NEK3-202ENST00000550841 JARID2Q92833 1246 aaPredicted RBP27.02■■□□□ 1.92
NEK3-202ENST00000550841 A0A0G2JLW4 131 aa27.01■■□□□ 1.91
NEK3-202ENST00000550841 PLIN1O60240 522 aa27.01■■□□□ 1.91
NEK3-202ENST00000550841 DPEP1P16444 411 aa27.01■■□□□ 1.91
NEK3-202ENST00000550841 PDE3AQ14432 1141 aa27.01■■□□□ 1.91
NEK3-202ENST00000550841 MASTLQ96GX5 879 aa27.01■■□□□ 1.91
NEK3-202ENST00000550841 TNNQ9UQP3 1299 aa27.01■■□□□ 1.91
NEK3-202ENST00000550841 UTYO14607 1347 aa27■■□□□ 1.91
NEK3-202ENST00000550841 CASP7P55210 303 aa27■■□□□ 1.91
NEK3-202ENST00000550841 TMEM57Q8N5G2 664 aa27■■□□□ 1.91
NEK3-202ENST00000550841 PLA2G12BQ9BX93 195 aa27■■□□□ 1.91
NEK3-202ENST00000550841 USP44Q9H0E7 712 aa27■■□□□ 1.91
NEK3-202ENST00000550841 SRGNP10124 158 aa26.99■■□□□ 1.91
NEK3-202ENST00000550841 NPR1P16066 1061 aa26.99■■□□□ 1.91
NEK3-202ENST00000550841 CRY2Q49AN0 593 aa26.99■■□□□ 1.91
NEK3-202ENST00000550841 STYK1Q6J9G0 422 aa26.99■■□□□ 1.91
NEK3-202ENST00000550841 RPGRQ92834 1020 aaKnown RBP26.99■■□□□ 1.91
NEK3-202ENST00000550841 PIM2Q9P1W9 311 aa26.99■■□□□ 1.91
NEK3-202ENST00000550841 GNAI3P08754 354 aa26.98■■□□□ 1.91
NEK3-202ENST00000550841 CHRNA5P30532 468 aa26.98■■□□□ 1.91
NEK3-202ENST00000550841 SF3B3Q15393 1217 aaKnown RBP26.98■■□□□ 1.91
NEK3-202ENST00000550841 ZNF622Q969S3 477 aaKnown RBP eCLIP26.98■■□□□ 1.91
NEK3-202ENST00000550841 RBM17Q96I25 401 aaKnown RBP26.98■■□□□ 1.91
NEK3-202ENST00000550841 ANKRD31Q8N7Z5 1873 aa26.98■■□□□ 1.91
NEK3-202ENST00000550841 ALDH1B1P30837 517 aa26.97■■□□□ 1.91
NEK3-202ENST00000550841 ITPRIPQ8IWB1 547 aa26.97■■□□□ 1.91
NEK3-202ENST00000550841 CNKSR1Q969H4 720 aa26.97■■□□□ 1.91
NEK3-202ENST00000550841 NBPF7P0C2Y1 421 aaPredicted RBP26.96■■□□□ 1.91
NEK3-202ENST00000550841 UBTFL1P0CB47 393 aaPredicted RBP26.96■■□□□ 1.91
NEK3-202ENST00000550841 RLBP1P12271 317 aa26.96■■□□□ 1.91
NEK3-202ENST00000550841 KCNA3P22001 575 aa26.96■■□□□ 1.91
NEK3-202ENST00000550841 RRP1P56182 461 aaKnown RBP26.96■■□□□ 1.91
NEK3-202ENST00000550841 CCDC152Q4G0S7 254 aa26.96■■□□□ 1.91
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms